Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 38 lcl|Aclame:protein:vir:9704|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 36 lcl|Aclame:protein:vir:9702|NCBI_annot:hypothetical HHsearch (proba=100.00%)
TermL 33 lcl|Aclame:protein:vir:9699|NCBI_annot:hypothetical Blast (e-value=0)
MTP 44 lcl|Aclame:protein:vir:9710|NCBI_annot:hypothetical Blast (e-value=1e-115)
Sheath NOT FOUND
Ad1 40 lcl|Aclame:protein:vir:9706|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 41 lcl|Aclame:protein:vir:9707|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 42 lcl|Aclame:protein:vir:9708|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 43 lcl|Aclame:protein:vir:9709|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:9704
protein:vir:3870
protein:vir:100884
315.2
A2
Lc-Nu
100 %
45 %
41 %
Portal protein:vir:9702
protein:vir:3868
protein:vir:81095
315.2
A2
tp310-1
100 %
53 %
27 %
TermL protein:vir:9699
protein:vir:3867
protein:vir:81099
315.2
A2
tp310-1
100 %
50 %
35 %
MTP protein:vir:9710
protein:vir:3875
protein:vir:1275
315.2
A2
phi-105
100 %
46 %
28 %
Ad1 protein:vir:9706
protein:vir:3871
protein:vir:1384
315.2
A2
phi3626
100 %
40 %
28 %
Hc1 protein:vir:9707
protein:vir:3872
protein:vir:80342
315.2
A2
phi644-2
100 %
27 %
26 %
Ne1 protein:vir:9708
protein:vir:3873
protein:vir:81106
315.2
A2
tp310-1
100 %
40 %
23 %
Tc1 protein:vir:9709
protein:vir:3874
protein:vir:96002
315.2
A2
2638A
100 %
25 %
23 %