Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 315.2 | Genbank acc : NC_004585 | Aclame index mge :174

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 60

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	38	lcl\|Aclame:protein:vir:9704\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	36	lcl\|Aclame:protein:vir:9702\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	33	lcl\|Aclame:protein:vir:9699\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	44	lcl\|Aclame:protein:vir:9710\|NCBI_annot:hypothetical	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	40	lcl\|Aclame:protein:vir:9706\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	41	lcl\|Aclame:protein:vir:9707\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	42	lcl\|Aclame:protein:vir:9708\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	43	lcl\|Aclame:protein:vir:9709\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9704 protein:vir:3870 protein:vir:100884	315.2 A2 Lc-Nu	100 % 45 % 41 %
Portal	protein:vir:9702 protein:vir:3868 protein:vir:81095	315.2 A2 tp310-1	100 % 53 % 27 %
TermL	protein:vir:9699 protein:vir:3867 protein:vir:81099	315.2 A2 tp310-1	100 % 50 % 35 %
MTP	protein:vir:9710 protein:vir:3875 protein:vir:1275	315.2 A2 phi-105	100 % 46 % 28 %
Ad1	protein:vir:9706 protein:vir:3871 protein:vir:1384	315.2 A2 phi3626	100 % 40 % 28 %
Hc1	protein:vir:9707 protein:vir:3872 protein:vir:80342	315.2 A2 phi644-2	100 % 27 % 26 %
Ne1	protein:vir:9708 protein:vir:3873 protein:vir:81106	315.2 A2 tp310-1	100 % 40 % 23 %
Tc1	protein:vir:9709 protein:vir:3874 protein:vir:96002	315.2 A2 2638A	100 % 25 % 23 %