Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JL1 | Genbank acc : NC_019419

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 60

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	54	lcl\|NC_019419.2_cdsid_YP_006990381.1	HHsearch (proba=100.00%)
Portal	60	lcl\|NC_019419.2_cdsid_YP_006990387.1	HHsearch (proba=100.00%)
TermL	1	lcl\|NC_019419.2_cdsid_YP_006990388.1	Blast (e-value=4e-86)
MTP	49	lcl\|NC_019419.2_cdsid_YP_006990376.1	Blast (e-value=1e-30)
Sheath	NOT FOUND
Ad1	53	lcl\|NC_019419.2_cdsid_YP_006990380.1	HHsearch (proba=100.00%)
Hc1	52	lcl\|NC_019419.2_cdsid_YP_006990379.1	HHsearch (proba=100.00%)
Ne1	51	lcl\|NC_019419.2_cdsid_YP_006990378.1	HHsearch (proba=100.00%)
Tc1	50	lcl\|NC_019419.2_cdsid_YP_006990377.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95131 protein:vir:96792 protein:vir:96123	PA73 phiHSIC 37	26 % 22 % 15 %
Portal	protein:vir:95149 protein:vir:80453 protein:vir:78393	PA73 BcepGomr SETP3	30 % 27 % 27 %
TermL	protein:vir:94991 protein:vir:78394 protein:vir:94525	KS7 SETP3 phiJL-1	40 % 39 % 19 %
MTP	protein:vir:107670 protein:vir:104349 protein:vir:103277	T1 RTP JK06	32 % 31 % 28 %
Ad1	protein:vir:78383 protein:vir:95004 protein:vir:95176	SETP3 KS7 PA73	26 % 26 % 25 %
Hc1	protein:vir:104346 protein:vir:80382 protein:vir:97237	RTP BcepGomr M6	31 % 26 % 26 %
Ne1	protein:vir:78380 protein:vir:94994 protein:vir:79638	SETP3 KS7 TLS	40 % 38 % 34 %
Tc1	protein:vir:104348 protein:vir:79637 protein:vir:107704	RTP TLS T1	22 % 19 % 19 %