BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019419.2_cdsid_YP_006990388.1 [gene=JL1_1] [protein=terminase] [protein_id=YP_006990388.1] [location=complement(8..1393)] (461 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hyp... 309 4e-86 gi|11160|lcl|protein:vir:78394 Length: 423 # NCBI annotation: hy... 300 2e-83 gi|8939|lcl|protein:vir:103777 Length: 473 # NCBI annotation: pu... 35 0.002 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 34 0.004 gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: ter... 33 0.007 gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: te... 29 0.11 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 28 0.25 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 28 0.27 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 27 0.37 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 27 0.39 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 27 0.40 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 27 0.40 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 27 0.63 gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hyp... 25 1.3 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 25 1.6 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 25 1.6 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 25 2.0 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 25 2.5 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 23 5.2 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 23 6.7 >gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224036;genbank:gi:62327323;genbank:GeneID :5176819 Length = 423 Score = 309 bits (792), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 170/418 (40%), Positives = 251/418 (60%), Gaps = 32/418 (7%) Query: 52 KILGLCSGFGGGKSWVAARKVIQLLTLNPGYDGIVT--EPTIPLLVKIMYPELEKAFDEA 109 K +GFG GKS V + L ++ G D ++ EPT L+ I+ P +E+ + Sbjct: 20 KFPAFVAGFGTGKSEVMCNSAL-LDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDW 78 Query: 110 GFRWKFNKQDKIYNVLVKGKWTRVICESMENYTRLIGVNAAWIVADEFDTTKQDVAMAAY 169 G R+K+NK D I G++ + +++N R++G + DE DT +D A A+ Sbjct: 79 GIRYKYNKSDNII-YTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAW 137 Query: 170 HKLLGRLRAGFVRQF-----------VIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDN 218 +K++ R R R + + +TPEG+R ++ + V+K +I+A TT N Sbjct: 138 NKVIARNRQ-LPRTYRPITPKPANTVSVFTTPEGFRFVHDRWAVKKKPGYEMIQASTTSN 196 Query: 219 HHLPADFIDTLRSQYPTNLIDAYLNGLFVNLTSGAVYKMFNREENASTEEVQPEDTLIIG 278 LP D++ +LR YP LIDAY++G FVNLTSG+VY ++R +N+S E +QP +TL IG Sbjct: 197 PFLPEDYVQSLRDTYPGQLIDAYIDGEFVNLTSGSVYYAYDRRKNSSRETIQPGETLYIG 256 Query: 279 MDFNVTKMAAVVYVRRQRVTENREFRDEIHAVDEFVDLFDTPAMIEAIEERYPDHCAAGR 338 DFNV MA+ VYV+R+ V HAV E VD+FDTP ++ I ER+ Sbjct: 257 QDFNVGHMASTVYVQREYV---------WHAVAELVDMFDTPDVVREITERWGRQ--GHH 305 Query: 339 VVVYPDSSGKSRKTVNASSSDIAQLEDAGFEVEYDSVNPPVKDRLIAMNTMMCNSKGVRQ 398 +V+YPD+SGK+RK+ +AS+SDIAQL++AGFE+ SVNP VKDR+ ++N + + + Sbjct: 306 IVMYPDASGKNRKSTDASTSDIAQLQNAGFEIRAKSVNPAVKDRVASVNKALESGR---- 361 Query: 399 YFVNLDKCPTLAKCLEQQVYDLKKGEPDKTAGVDHMNDAAGYPIAHLFPVIRPIAVVP 456 VN CP A+CLEQQ YD K G PDKT+G DH NDA GYPIA+ P+++P++ +P Sbjct: 362 LMVNEQACPVTARCLEQQAYD-KNGIPDKTSGNDHQNDATGYPIAYEMPLVKPVSHIP 418 >gi|11160|lcl|protein:vir:78394 Length: 423 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110830;genbank:gi:134288591;genbank:Ge neID:5179657 Length = 423 Score = 300 bits (768), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 166/418 (39%), Positives = 248/418 (59%), Gaps = 32/418 (7%) Query: 52 KILGLCSGFGGGKSWVAARKVIQLLTLNPGYDGIVT--EPTIPLLVKIMYPELEKAFDEA 109 K +GFG GKS V + L ++ G D ++ EPT L+ I+ P +E+ + Sbjct: 20 KFPAFVAGFGTGKSEVMCNSAL-LDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDW 78 Query: 110 GFRWKFNKQDKIYNVLVKGKWTRVICESMENYTRLIGVNAAWIVADEFDTTKQDVAMAAY 169 G R+K+NK D I G++ + +++N R++G + DE DT +D A A+ Sbjct: 79 GIRYKYNKSDNII-YTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAW 137 Query: 170 HKLLGRLRAGFVRQF-----------VIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDN 218 +K++ R R R + + +TPEG+R ++ + V+K +I+A TT N Sbjct: 138 NKVIARNRQ-LPRTYRPITPKPANTVSVFTTPEGFRFVHDRWVVKKNPGYEMIQAPTTSN 196 Query: 219 HHLPADFIDTLRSQYPTNLIDAYLNGLFVNLTSGAVYKMFNREENASTEEVQPEDTLIIG 278 LP D++ +LR YP LIDAY++G FVNLTS +VY +++ +N+S E +QP +TL IG Sbjct: 197 PFLPEDYVQSLRDTYPGRLIDAYIDGEFVNLTSDSVYYAYDQRKNSSRETIQPGETLYIG 256 Query: 279 MDFNVTKMAAVVYVRRQRVTENREFRDEIHAVDEFVDLFDTPAMIEAIEERYPDHCAAGR 338 DFNV MA+ VYV+R V HAV E VD+ DTP ++ I ER+ H Sbjct: 257 QDFNVGHMASTVYVQRGYV---------WHAVAELVDMLDTPEVVREITERWKRH--GHH 305 Query: 339 VVVYPDSSGKSRKTVNASSSDIAQLEDAGFEVEYDSVNPPVKDRLIAMNTMMCNSKGVRQ 398 +V+YPD++GK+RK+ +AS+SDIAQL +AGFE+ SVNP VKDR+ ++N + + + Sbjct: 306 IVMYPDATGKNRKSTDASTSDIAQLHNAGFEIRAKSVNPAVKDRVASVNKALESGR---- 361 Query: 399 YFVNLDKCPTLAKCLEQQVYDLKKGEPDKTAGVDHMNDAAGYPIAHLFPVIRPIAVVP 456 VN CP A+CL+QQ YD K G PDKT+G DH NDA GYPIA+ P+++P++ +P Sbjct: 362 LMVNEQTCPVTARCLKQQAYD-KNGIPDKTSGNDHQNDATGYPIAYEMPLVKPVSHIP 418 >gi|8939|lcl|protein:vir:103777 Length: 473 # NCBI annotation: putative TerL # Family: family:all:147 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024923;genbank:gi:48697193;genbank:GeneID :2846101 Length = 473 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 8/190 (4%) Query: 188 STPEGYRAMYQIFEVEKGSQKRLIRAKTTDNHHLPADFIDTLRSQYPTNLIDAYLNGLFV 247 + PEGY Q V + + ++ + +LPA + + + I L + Sbjct: 193 TKPEGYAFFRQPGGVMRDGDRWVVNPAAENIDNLPAGYYERGMQGKKFDWIKVNLGNDYG 252 Query: 248 NLTSGA-VYKMFNREENASTEEVQPEDTLIIGMDFNVTKMAAVVYVRRQRVTENREFRDE 306 + G V+ + + E+ L IGMDF +T AAV+ R+ R E Sbjct: 253 FVVDGKPVHPDYADSLHCKPFELVKSQPLWIGMDFGLTP-AAVIGQRKP--MGGWRIRSE 309 Query: 307 IHAVDEFVDLFDTPAMIEAIEERYPDHCAAGRVVVYPDSSGKSRKTVNASSSDIAQLEDA 366 + A F + + E YP AG +Y D +G R + + L A Sbjct: 310 VVATSMGARKFGI-ELKRHLAEIYPGFEVAG---IYGDPAGDQRSQADDEDTPFRILRAA 365 Query: 367 GFEVEYDSVN 376 GFE + N Sbjct: 366 GFEAKPAPTN 375 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 33.9 bits (76), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 45/197 (22%) Query: 61 GGGKSWVAARKVIQLLTLNPGYDGIVT--------EPTIPLLVKIMYP------------ 100 G GKS+ A KVI + + P + +VT + T + K+ + Sbjct: 45 GSGKSYATAAKVIIDIMMYPYVNWLVTRQYATTQKDSTFATIRKVAHSMGVLDLFKFTKS 104 Query: 101 ELEKAFDEAGFRWKFNKQD---KIYNVL-VKGKWTRVICESMENYTRLIGVNAAWIVADE 156 LE + + G + F D KI ++ V G R CE L D Sbjct: 105 PLEITYKQTGQKVFFRGMDDPLKITSIQPVTGFICRRWCEEAYELKSL----------DA 154 Query: 157 FDTTKQDVAMAAYHKLLGRLRAGFVRQFVIVSTPEGYRAM--YQIFEVE-KGSQKRLIRA 213 FDT ++ + G L G Q VI P R ++ F+ + K + R I Sbjct: 155 FDTVEE--------SMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKRNHSRAITT 206 Query: 214 KTTDNHHLPADFIDTLR 230 DN HL AD++D+L+ Sbjct: 207 TYKDNDHLNADYVDSLK 223 >gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: terminase large subunit # Family: family:all:662 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579204;genbank:gi:93007440;genbank:GeneID :5076784 Length = 448 Score = 33.1 bits (74), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 10/124 (8%) Query: 167 AAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDNHHLPADFI 226 A H +G LR G ++ +TP+ + +I E+ R +T D HHLP Sbjct: 175 ALAHSAMG-LRIGPRPHYIASTTPKPRK---EIVELLARPDVITTRGRTRDAHHLPQMMR 230 Query: 227 DTLRSQYP-TNLIDAYLNGLFVNLTSGAVYK--MFNREENASTEEVQPEDTLIIGMDFNV 283 D L +QY T L L+G + GA++ + +R + P +++ +D V Sbjct: 231 DKLVAQYAGTRLERQELDGEVLQDVDGALWSWPLLDRLRVGAP---MPMSRIVVAIDPAV 287 Query: 284 TKMA 287 + A Sbjct: 288 SNTA 291 >gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112491;genbank:gi:53793591;uniprot:Q5ZGG2 ;genbank:GeneID:3101748 Length = 432 Score = 29.3 bits (64), Expect = 0.11, Method: Compositional matrix adjust. Identities = 12/24 (50%), Positives = 17/24 (70%) Query: 208 KRLIRAKTTDNHHLPADFIDTLRS 231 K+ I+A TDN HLPA ++ +L S Sbjct: 186 KKFIQALPTDNPHLPASYLTSLLS 209 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 28.1 bits (61), Expect = 0.25, Method: Compositional matrix adjust. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 146 GVNAAWIVADEFDTTKQDVAMAAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIF-EVEK 204 G++ I DEF +A + + + +G + +I+STP G Y+++ + E+ Sbjct: 167 GMSFNIIFLDEFAFVPNHIAEQFFASVYPTISSGKSTKVIIISTPHGMNQFYKLWHDAER 226 Query: 205 GS 206 G+ Sbjct: 227 GA 228 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 27.7 bits (60), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 11/82 (13%) Query: 129 KWTRVICESMENYTRLI----------GVNAAWIVADEFDTTKQDVAMAAYHKLLGRLRA 178 +W R E +EN ++++ G++ I DEF VA + + + + Sbjct: 140 QWNRGSLE-LENGSKILAASTSASAVRGMSFNVIFLDEFAFVPNHVADQFFSSVYPTISS 198 Query: 179 GFVRQFVIVSTPEGYRAMYQIF 200 G + +I+STP G Y+++ Sbjct: 199 GKSTKVIIISTPHGMNMFYKLW 220 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:G eneID:5220189 Length = 574 Score = 27.3 bits (59), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%) Query: 22 PRPTRVAQAVRIYQPDCLPHQVELLRDTKTKILGLCSGFGGGKSWVAARKVIQLLTLNP 80 P+PTR A+ D L H K L + + G GKSW+ A V+ +L ++P Sbjct: 28 PKPTRAQLAI----ADYLQH--------GPKRLQISAFRGVGKSWITAAFVLWVLFVDP 74 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:G eneID:5600564 Length = 485 Score = 27.3 bits (59), Expect = 0.39, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 40 PHQVEL-LRDTKTKILGLCSGFGGGKSWVAARKVIQLLTLNPGYDGIVTEPT 90 PH V+L + + K C G GKS A+ + + L PG G + PT Sbjct: 18 PHHVQLAIHRSTAKRRVACLGRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:G eneID:5600506 Length = 485 Score = 27.3 bits (59), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 40 PHQVEL-LRDTKTKILGLCSGFGGGKSWVAARKVIQLLTLNPGYDGIVTEPT 90 PH V+L + + K C G GKS A+ + + L PG G + PT Sbjct: 18 PHHVQLAIHRSTAKRRVACLGRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 27.3 bits (59), Expect = 0.40, Method: Compositional matrix adjust. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 146 GVNAAWIVADEFDTTKQDVAMAAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIF 200 G++ I DEF +A + + + + +G + +I+STP+G Y+++ Sbjct: 166 GMSFNIIFLDEFAFVPNHIADSFFASVYPTITSGKSTKVIIISTPQGMNHFYKMW 220 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 26.6 bits (57), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 152 IVADEFDTTKQDVAMAAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIF-EVEKGSQK 208 I DEF +A + + + +G + +IVSTP G Y+++ + EKG + Sbjct: 170 IFLDEFAFIPNHIADDFFASVYPTITSGQSTKVIIVSTPRGMNHFYRMWHDSEKGKSE 227 >gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hypothetical protein ORF006 # Family: family:all:144 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293413;genbank:gi:148912834;genbank:Ge neID:5228205 Length = 531 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 217 DNHHLPADFIDTLRSQYPTNLIDAYLNGLFVNLTSGAVYKMF 258 +N +LPA +I L S NL A+L G + GA+ ++ Sbjct: 255 ENPYLPASYIAELESIKEPNLRKAWLYGDWDVTAGGAIDDLW 296 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 27/176 (15%) Query: 58 SGFGGGKSWVAARKVIQLLTLNP-------GYDGIVTEPTIPLLVKIMYPELEKAFDEAG 110 G G GKSW AR +++ P +++ I L LE + G Sbjct: 22 GGRGSGKSWAIARLLVEAARRQPVRILCARELQNSISDSVIRL--------LEDTIEREG 73 Query: 111 FRWKFNKQDKIYNVLVKGKWTRVICESMEN----YTRLIGVNAAWIVADEFDTTKQDVAM 166 + +F Q + L G + ++N L G++ W+ + V Sbjct: 74 YSAEFEIQRSMIRHL--GTNAEFMFYGIKNNPTKIKSLEGIDICWV------EEAEAVTK 125 Query: 167 AAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDNHHLP 222 ++ L+ +R F +V + YQ F V L+ TDN H P Sbjct: 126 ESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 27/176 (15%) Query: 58 SGFGGGKSWVAARKVIQLLTLNP-------GYDGIVTEPTIPLLVKIMYPELEKAFDEAG 110 G G GKSW AR +++ P +++ I L LE + G Sbjct: 22 GGRGSGKSWAIARLLVEAARRQPVRILCARELQNSISDSVIRL--------LEDTIEREG 73 Query: 111 FRWKFNKQDKIYNVLVKGKWTRVICESMEN----YTRLIGVNAAWIVADEFDTTKQDVAM 166 + +F Q + L G + ++N L G++ W+ + V Sbjct: 74 YSAEFEIQRSMIRHL--GTNAEFMFYGIKNNPTKIKSLEGIDICWV------EEAEAVTK 125 Query: 167 AAYHKLLGRLRAGFVRQFVIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDNHHLP 222 ++ L+ +R F +V + YQ F V L+ TDN H P Sbjct: 126 ESWDILIPTIRKPFSEIWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 21/100 (21%) Query: 74 QLLTLNPGYDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNKQDKIYN--VLVKGKWT 131 QL NP Y +E I + K + E++F R F DK+ + V+ +W Sbjct: 239 QLRKANPSYPHRTSERAIRRMRKNL---TEESF----LREAFGIWDKVVHRPVVTAARWR 291 Query: 132 RVICESME------------NYTRLIGVNAAWIVADEFDT 159 R+ +++R++ VNA W+ D+ T Sbjct: 292 RLESTGPAAGVKPNGFGVDMSHSRMVSVNAVWLDGDQAHT 331 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 95 VKIMYPE-LEKAFDEAGFRWKFNKQDKIY 122 + +M+P+ L++ DEAG W ++ DK + Sbjct: 17 IGLMHPDYLKRKIDEAGMEWVQSEHDKKW 45 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust. Identities = 8/32 (25%), Positives = 20/32 (62%) Query: 143 RLIGVNAAWIVADEFDTTKQDVAMAAYHKLLG 174 ++IG++ W ++ TT++ +A A+ ++ G Sbjct: 462 KVIGISQGWKLSGAIKTTERRIAAASGQRIEG 493 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:G eneID:5247118 Length = 569 Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 16/33 (48%) Query: 21 PPRPTRVAQAVRIYQPDCLPHQVELLRDTKTKI 53 P TR+ + + + P P Q EL+ T++ Sbjct: 19 PDWETRLEEGLSLIPPPIFPEQAELMMSVFTRL 51 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.136 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,241 Number of Sequences: 514 Number of extensions: 9249 Number of successful extensions: 68 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 23 length of query: 461 length of database: 206,069 effective HSP length: 75 effective length of query: 386 effective length of database: 167,519 effective search space: 64662334 effective search space used: 64662334 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)