BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019419.2_cdsid_YP_006990376.1 [gene=JL1_49] [protein=putative phage major tail protein] [protein_id=YP_006990376.1] [location=complement(35020..35745)] (241 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|3775|lcl|protein:vir:107670 Length: 222 # NCBI annotation: pu... 124 1e-30 gi|6571|lcl|protein:vir:104349 Length: 218 # NCBI annotation: pu... 111 7e-27 gi|12390|lcl|protein:vir:79636 Length: 220 # NCBI annotation: Ts... 100 2e-23 gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hy... 99 5e-23 gi|19189|lcl|protein:vir:9580 Length: 183 # NCBI annotation: unk... 23 4.1 gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp... 22 7.8 gi|4167|lcl|protein:vir:94649 Length: 189 # NCBI annotation: hyp... 22 9.1 >gi|3775|lcl|protein:vir:107670 Length: 222 # NCBI annotation: putative major tail protein # Family: family:all:47 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003904;genbank:gi:45686320;genbank:GeneID :2773010 Length = 222 Score = 124 bits (310), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 17/226 (7%) Query: 4 QLPNGSSVQIGSVLGAGIAVTAATNAAASISDLTQGCVITCAESHGLAVGDVVMFTKTPW 63 LPNG+ + + + G + TA TNA + V T A LA GD V+ T++ W Sbjct: 2 HLPNGAQIFVETSRGVEVEATAITNA--------ENPVATVASKGDLAKGDYVIVTQSTW 53 Query: 64 VRALNRAFIVGKVDANDVTLARFDTQDVTKYPTGAFGVGTPGEVVKVSSFIDFPFITNVG 123 + ++R IV +TLA DT D +P G GT K++ + + P + +G Sbjct: 54 AKMVSRVLIVTDAQETSITLAGIDTSDTLVFPAG----GTMS-FAKITGWTEIPCVQEIG 108 Query: 124 VSGGDQQTTTFQPLQVNTAISLNTTKNPLVQTYTFTHDEEDPIRPILEDLDDTQKTTVIK 183 GG+QQ T+Q L + + T K+ + TYTF H+ ++PI PIL LD + + T ++ Sbjct: 109 QDGGEQQYYTYQCLSDDKEQQIPTFKSAVSLTYTFAHEFDNPIYPILRKLDSSGQVTAVR 168 Query: 184 FTNPAAASGKGEIRIYPAKVSFQKIPSAEVNNVETVESTLTMQSDM 229 P A+ E+R++ +SF IPS +VN +ETVE ++++ D Sbjct: 169 MYVPKAS----EMRMWAGILSFNDIPSTQVNEMETVELAVSLKGDF 210 >gi|6571|lcl|protein:vir:104349 Length: 218 # NCBI annotation: putative major tail protein # Family: family:all:47 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398977;genbank:gi:81343961;genbank:GeneID :3778881 Length = 218 Score = 111 bits (278), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 17/226 (7%) Query: 4 QLPNGSSVQIGSVLGAGIAVTAATNAAASISDLTQGCVITCAESHGLAVGDVVMFTKTPW 63 L NG+ V + G IAVTA +NAA+ V+T ++ G+ VGD ++FT + Sbjct: 3 HLSNGTQVLVEGSRGDAIAVTAISNAASP--------VLTVDDASGIVVGDYLLFTASAS 54 Query: 64 VRALNRAFIVGKVDANDVTLARFDTQDVTKYPTGAFGVGTPGEVVKVSSFIDFPFITNVG 123 ++ V V VT+ DT TK+P G GEVVK+ S+ + P + +V Sbjct: 55 TLLADKQVRVTAVSGTSVTVEGIDTSSTTKFPAG-----LTGEVVKILSWFEVPCVQDVS 109 Query: 124 VSGGDQQTTTFQPLQVNTAISLNTTKNPLVQTYTFTHDEEDPIRPILEDLDDTQKTTVIK 183 GG+QQ FQ L + + T K+ + T+TF H+ +P+ P+L D D++ + I+ Sbjct: 110 TDGGEQQFVNFQCLSDDREQKIPTYKSAVTNTFTFAHEYTNPVYPVLRDYDESGQVVAIR 169 Query: 184 FTNPAAASGKGEIRIYPAKVSFQKIPSAEVNNVETVESTLTMQSDM 229 P A E+R+ ++F P+ VN +ETV ++++ + Sbjct: 170 LFVPRAQ----EMRLQSGTIAFNDTPTIGVNEIETVSIAVSIRGRL 211 >gi|12390|lcl|protein:vir:79636 Length: 220 # NCBI annotation: TsbA # Family: family:all:47 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285531;genbank:gi:148734514;genbank:Ge neID:5219994 Length = 220 Score = 100 bits (248), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 15/223 (6%) Query: 4 QLPNGSSVQIGSVLGAGIAVTAATNAAASISDLTQGCVITCAESHGLAVGDVVMFTKTPW 63 LPNG+ + I + ++ T +NA L G GD ++ T + W Sbjct: 2 HLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESG-------GDAFNKGDYIIVTASSW 54 Query: 64 VRALNRAFIVGKVDANDVTLARFDTQDVTKYPTGAFGVGTPGEVVKVSSFIDFPFITNVG 123 + L+R V + ++ VT+ DT D +P G+ K++ + + P + ++G Sbjct: 55 GKLLDRVLRVTEAESTKVTVEGIDTTDTNVFPAGS----VTASFAKINGWTEIPCVQDLG 110 Query: 124 VSGGDQQTTTFQPLQVNTAISLNTTKNPLVQTYTFTHDEEDPIRPILEDLDDTQKTTVIK 183 GG+QQ +Q L + L T K+ + TYTF H+ ++PI P+L D++ ++ Sbjct: 111 QDGGEQQYYNYQCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALR 170 Query: 184 FTNPAAASGKGEIRIYPAKVSFQKIPSAEVNNVETVESTLTMQ 226 P A E+R++ +SF +IP VN +ETV +++++ Sbjct: 171 MYVPKAK----EMRLWAGVLSFNEIPQTAVNEMETVSLSVSLK 209 >gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hypothetical protein # Family: family:all:47 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277457;genbank:gi:71834099;genbank:GeneID :3562388 Length = 216 Score = 99.0 bits (245), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 17/223 (7%) Query: 4 QLPNGSSVQIGSVLGAGIAVTAATNAAASISDLTQGCVITCAESHGLAVGDVVMFTKTPW 63 L NG+ + + +AVTA TNAA V+T ++ A GD ++ + W Sbjct: 3 HLSNGTQIFLQGSKSESVAVTAITNAAQP--------VMTVDDASTFAAGDFIVVESSSW 54 Query: 64 VRALNRAFIVGKVDANDVTLARFDTQDVTKYPTGAFGVGTPGEVVKVSSFIDFPFITNVG 123 + + V A +T+ DT D ++P G GT + KV ++ + P + +V Sbjct: 55 SKLSEKQLRVVTSTATTITVEGIDTTDPLQFPAG----GT-ASIYKVLTWYEMPCVQDVS 109 Query: 124 VSGGDQQTTTFQPLQVNTAISLNTTKNPLVQTYTFTHDEEDPIRPILEDLDDTQKTTVIK 183 GG+QQ T+Q L + + T K+ + TYTF H+ +PI P+L + D++ I+ Sbjct: 110 TDGGEQQFVTYQCLADDREQQIPTYKSAVNTTYTFAHEFTNPIYPVLRNYDESGALIAIR 169 Query: 184 FTNPAAASGKGEIRIYPAKVSFQKIPSAEVNNVETVESTLTMQ 226 P A GE+R++ ++F + P+ VN +ETV +T++ Sbjct: 170 AYVPKA----GEVRLWTGTIAFNETPNVSVNEIETVSVAITVR 208 >gi|19189|lcl|protein:vir:9580 Length: 183 # NCBI annotation: unknown # Family: family:all:698 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862885;genbank:gi:32469421;genbank:GeneID :1461322 Length = 183 Score = 22.7 bits (47), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/17 (70%), Positives = 12/17 (70%) Query: 14 GSVLGAGIAVTAATNAA 30 GSVLG G VTA NAA Sbjct: 156 GSVLGYGTTVTAFPNAA 172 >gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp2 # Family: family:all:54 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224140;genbank:gi:62362215;genbank:GeneID :3342458 Length = 439 Score = 21.9 bits (45), Expect = 7.8, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 71 FIVGKVDANDVTLARFDTQDVTKYP 95 F GK DA L + D TK+P Sbjct: 294 FYAGKTDATPKQLKDWKVTDDTKFP 318 >gi|4167|lcl|protein:vir:94649 Length: 189 # NCBI annotation: hypothetical protein # Family: family:all:5054 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579214;genbank:gi:93007450;genbank:GeneID :5076768 Length = 189 Score = 21.6 bits (44), Expect = 9.1, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%) Query: 102 GTPGEVVKVSSFIDFPFITNVGVSGGDQQTT 132 GTP V SS +D P I ++ +SG Q T Sbjct: 28 GTP---VYASSSVDVPGIKSLAISGNMQSKT 55 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.315 0.131 0.369 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,524 Number of Sequences: 514 Number of extensions: 3745 Number of successful extensions: 23 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 10 length of query: 241 length of database: 206,069 effective HSP length: 69 effective length of query: 172 effective length of database: 170,603 effective search space: 29343716 effective search space used: 29343716 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)