Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_CsaM_GAP31 | Genbank acc : NC_019400

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 269

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	204	lcl\|NC_019400.1_cdsid_YP_006987037.1	HHsearch (proba=100.00%)
Portal	200	lcl\|NC_019400.1_cdsid_YP_006987033.1	HHsearch (proba=100.00%)
TermL	199	lcl\|NC_019400.1_cdsid_YP_006987032.1	Blast (e-value=2e-70)
MTP	NOT FOUND
Sheath	214	lcl\|NC_019400.1_cdsid_YP_006987047.1	HHsearch (proba=100.00%)
Ad1	210	lcl\|NC_019400.1_cdsid_YP_006987043.1	HHsearch (proba=88.99%)
Hc1	212	lcl\|NC_019400.1_cdsid_YP_006987045.1	HHsearch (proba=96.18%)
Ne1	211	lcl\|NC_019400.1_cdsid_YP_006987044.1	HHsearch (proba=100.00%)
Tc1	213	lcl\|NC_019400.1_cdsid_YP_006987046.1	HHsearch (proba=92.51%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:393	Felix 01 VHML N15	21 % 19 % 15 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	26 % 20 % 19 %
TermL	protein:vir:95253 protein:vir:94970 protein:vir:103223	Felix 01 Xp15 JK06	37 % 21 % 20 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:78611	Felix 01 B054 BcepNY3	21 % 19 % 17 %
Ad1	protein:vir:95259 protein:vir:9928	Felix 01 315.6	24 % 20 %
Hc1	protein:vir:5258 protein:vir:95261	Aaphi23 Felix 01	19 % 17 %
Ne1	protein:vir:78607 protein:vir:106728 protein:vir:101563	BcepNY3 Bcep1 Bcep43	25 % 25 % 24 %
Tc1	protein:vir:80105 protein:vir:94061 protein:vir:95262	B054 OP2 Felix 01	19 % 15 % 17 %