Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bcep43 | Genbank acc : NC_005342 | Aclame index mge :1477

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 65

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	12	lcl\|Aclame:protein:vir:101557\|NCBI_annot:gp12\|genbank:acc:NP_958117;genbank:gi:41057663;genbank:Gene	HHsearch (proba=100.00%)
Portal	17	lcl\|Aclame:protein:vir:101541\|NCBI_annot:gp17\|genbank:acc:NP_958122;genbank:gi:41057668;genbank:Gene	HHsearch (proba=100.00%)
TermL	18	lcl\|Aclame:protein:vir:101556\|NCBI_annot:gp18\|genbank:acc:NP_958123;genbank:gi:41057669;genbank:Gene	Blast (e-value=0)
MTP	NOT FOUND
Sheath	4	lcl\|Aclame:protein:vir:101576\|NCBI_annot:gp04\|genbank:acc:NP_958108;genbank:gi:41057654;genbank:Gene	HHsearch (proba=100.00%)
Ad1	8	lcl\|Aclame:protein:vir:101559\|NCBI_annot:gp08\|genbank:acc:NP_958112;genbank:gi:41057658;genbank:Gene	HHsearch (proba=100.00%)
Hc1	6	lcl\|Aclame:protein:vir:101560\|NCBI_annot:gp06\|genbank:acc:NP_958110;genbank:gi:41057656;genbank:Gene	HHsearch (proba=100.00%)
Ne1	7	lcl\|Aclame:protein:vir:101563\|NCBI_annot:gp07\|genbank:acc:NP_958111;genbank:gi:41057657;genbank:Gene	HHsearch (proba=100.00%)
Tc1	5	lcl\|Aclame:protein:vir:101569\|NCBI_annot:gp05\|genbank:acc:NP_958109;genbank:gi:41057655;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:101557 protein:vir:3643 protein:vir:78558	Bcep43 Bcep781 BcepNY3	100 % 100 % 97 %
Portal	protein:vir:101541 protein:vir:3648 protein:vir:78589	Bcep43 Bcep781 BcepNY3	100 % 100 % 99 %
TermL	protein:vir:101556 protein:vir:3649 protein:vir:78588	Bcep43 Bcep781 BcepNY3	100 % 99 % 96 %
Sheath	protein:vir:101576 protein:vir:106730 protein:vir:3636	Bcep43 Bcep1 Bcep781	100 % 98 % 98 %
Ad1	protein:vir:101559 protein:vir:3639 protein:vir:78595	Bcep43 Bcep781 BcepNY3	100 % 100 % 94 %
Hc1	protein:vir:101560 protein:vir:77651 protein:vir:106729	Bcep43 Bcep781 Bcep1	100 % 99 % 97 %
Ne1	protein:vir:101563 protein:vir:77650 protein:vir:78607	Bcep43 Bcep781 BcepNY3	100 % 99 % 97 %
Tc1	protein:vir:101569 protein:vir:3637 protein:vir:106763	Bcep43 Bcep781 Bcep1	100 % 99 % 96 %