Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CP30A | Genbank acc : NC_018861

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 162

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	75	lcl\|NC_018861.1_cdsid_YP_006908137.1	HHsearch (proba=100.00%)
Portal	79	lcl\|NC_018861.1_cdsid_YP_006908141.1	HHsearch (proba=100.00%)
TermL	82	lcl\|NC_018861.1_cdsid_YP_006908144.1	Blast (e-value=4e-43)
MTP	40	lcl\|NC_018861.1_cdsid_YP_006908102.1	Blast (e-value=2e-22)
Sheath	62	lcl\|NC_018861.1_cdsid_YP_006908124.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	81	lcl\|NC_018861.1_cdsid_YP_006908143.1	HHsearch (proba=100.00%)
Hc2	122	lcl\|NC_018861.1_cdsid_YP_006908184.1	HHsearch (proba=100.00%)
Tc2	124	lcl\|NC_018861.1_cdsid_YP_006908186.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad2<->Hc2	41	2
Tc2<->Ad2	43	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:104549 protein:vir:104915	Syn9 P-SSM4 P-SSM2	33 % 31 % 30 %
Portal	protein:vir:5665 protein:vir:104500 protein:vir:101189	KVP40 P-SSM4 44RR2.8t	30 % 28 % 28 %
TermL	protein:vir:98262 protein:vir:104946 protein:vir:104536	RB43 P-SSM2 P-SSM4	27 % 27 % 27 %
MTP	protein:vir:104771 protein:vir:106918 protein:vir:106171	P-SSM2 S-PM2 Aeh1	31 % 29 % 27 %
Sheath	protein:vir:103456 protein:vir:7206 protein:vir:6894	RB32 T4 RB69	31 % 31 % 31 %
Ad2	protein:vir:107900 protein:vir:106985 protein:vir:7198	JS98 S-PM2 T4	27 % 27 % 27 %
Hc2	protein:vir:104739 protein:vir:106986 protein:vir:80995	P-SSM2 S-PM2 Phi1	23 % 23 % 22 %
Tc2	protein:vir:106402 protein:vir:5659 protein:vir:81023	Aeh1 KVP40 Phi1	27 % 25 % 25 %