Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 75 lcl|NC_018861.1_cdsid_YP_006908137.1 HHsearch (proba=100.00%)
Portal 79 lcl|NC_018861.1_cdsid_YP_006908141.1 HHsearch (proba=100.00%)
TermL 82 lcl|NC_018861.1_cdsid_YP_006908144.1 Blast (e-value=4e-43)
MTP 40 lcl|NC_018861.1_cdsid_YP_006908102.1 Blast (e-value=2e-22)
Sheath 62 lcl|NC_018861.1_cdsid_YP_006908124.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 81 lcl|NC_018861.1_cdsid_YP_006908143.1 HHsearch (proba=100.00%)
Hc2 122 lcl|NC_018861.1_cdsid_YP_006908184.1 HHsearch (proba=100.00%)
Tc2 124 lcl|NC_018861.1_cdsid_YP_006908186.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad2<->Hc2 41 2
Tc2<->Ad2 43 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103181
protein:vir:104549
protein:vir:104915
Syn9
P-SSM4
P-SSM2
33 %
31 %
30 %
Portal protein:vir:5665
protein:vir:104500
protein:vir:101189
KVP40
P-SSM4
44RR2.8t
30 %
28 %
28 %
TermL protein:vir:98262
protein:vir:104946
protein:vir:104536
RB43
P-SSM2
P-SSM4
27 %
27 %
27 %
MTP protein:vir:104771
protein:vir:106918
protein:vir:106171
P-SSM2
S-PM2
Aeh1
31 %
29 %
27 %
Sheath protein:vir:103456
protein:vir:7206
protein:vir:6894
RB32
T4
RB69
31 %
31 %
31 %
Ad2 protein:vir:107900
protein:vir:106985
protein:vir:7198
JS98
S-PM2
T4
27 %
27 %
27 %
Hc2 protein:vir:104739
protein:vir:106986
protein:vir:80995
P-SSM2
S-PM2
Phi1
23 %
23 %
22 %
Tc2 protein:vir:106402
protein:vir:5659
protein:vir:81023
Aeh1
KVP40
Phi1
27 %
25 %
25 %