Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : T4 | Genbank acc : NC_000866 | Aclame index mge :142

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 278

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	175	lcl\|Aclame:protein:vir:7214\|NCBI_annot:gp23	HHsearch (proba=100.00%)
Portal	169	lcl\|Aclame:protein:vir:7208\|NCBI_annot:gp20	HHsearch (proba=100.00%)
TermL	166	lcl\|Aclame:protein:vir:7205\|NCBI_annot:gp17''	Blast (e-value=0)
MTP	168	lcl\|Aclame:protein:vir:7207\|NCBI_annot:gp19	Blast (e-value=3e-95)
Sheath	167	lcl\|Aclame:protein:vir:7206\|NCBI_annot:gp18	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	159	lcl\|Aclame:protein:vir:7198\|NCBI_annot:gp13	HHsearch (proba=100.00%)
Hc2	160	lcl\|Aclame:protein:vir:7199\|NCBI_annot:gp14	HHsearch (proba=100.00%)
Tc2	161	lcl\|Aclame:protein:vir:7200\|NCBI_annot:gp15	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:7214 protein:vir:103463 protein:vir:6901	T4 RB32 RB69	100 % 98 % 94 %
Portal	protein:vir:7208 protein:vir:103458 protein:vir:6896	T4 RB32 RB69	100 % 99 % 89 %
TermL	protein:vir:7202 protein:vir:103455 protein:vir:6893	T4 RB32 RB69	100 % 99 % 90 %
MTP	protein:vir:7207 protein:vir:103457 protein:vir:6895	T4 RB32 RB69	100 % 99 % 88 %
Sheath	protein:vir:7206 protein:vir:103456 protein:vir:6894	T4 RB32 RB69	100 % 99 % 83 %
Ad2	protein:vir:7198 protein:vir:103451 protein:vir:6889	T4 RB32 RB69	100 % 98 % 84 %
Hc2	protein:vir:7199 protein:vir:103452 protein:vir:6890	T4 RB32 RB69	100 % 99 % 89 %
Tc2	protein:vir:7200 protein:vir:103453 protein:vir:6891	T4 RB32 RB69	100 % 99 % 76 %