BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_018861.1_cdsid_YP_006908102.1 [gene=D302_gp040] [protein=putative tail tube protein] [protein_id=YP_006908102.1] [location=complement(30093..30620)] (175 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T... 97 2e-22 gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: t... 89 2e-20 gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp1... 70 1e-14 gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: g... 70 2e-14 gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp... 68 7e-14 gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: g... 67 1e-13 gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: g... 64 1e-12 gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tai... 63 2e-12 gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp... 63 2e-12 gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: g... 60 2e-11 gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp1... 60 2e-11 gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: t... 60 2e-11 gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: g... 59 3e-11 gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: t... 59 3e-11 gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp1... 59 5e-11 gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: g... 44 1e-06 gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: p... 28 0.057 gi|5997|lcl|protein:vir:95545 Length: 195 # NCBI annotation: hyp... 24 0.91 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 23 2.8 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 23 2.8 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 22 5.2 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 21 7.0 gi|15919|lcl|protein:vir:3429 Length: 246 # NCBI annotation: tai... 21 8.1 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 21 8.4 >gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T4-like tail tube protein # Family: family:all:1107 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214362;genbank:gi:61806002;genbank:GeneID :3294291 Length = 195 Score = 96.7 bits (239), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 4/175 (2%) Query: 2 PLYTVDKLANALKGG-AKSDKYFIEIGTP-LGAPEVAFTEEDIILCKTASFPERTLGEVE 59 PL T+ + L GG A+++ + + + P + P+ A ++ L K A+ P + ++E Sbjct: 10 PLRTISNFKSKLTGGGARANLFEVVLTFPDVAQPDSAVLDKARFLVKGANLPASNVAQIE 69 Query: 60 AFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDVYKNNYHTCDPYSLMV 119 +GR LK+ GD TFD+ W+ D IR+ F W + I+ +N +P Sbjct: 70 VPFRGRVLKIAGDRTFDS-WTVTVINDTDFAIRSAFERWSNTINRLSDNTGLTNPADYQS 128 Query: 120 TAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEFTVDFTYSHWEKI 174 A V+Q++ +G + +Y F++ +P++VG IE++ D IQEFTV+ +WE I Sbjct: 129 DAYVYQLDRDGSTLRSYRFYDTFPTQVGPIELSYD-AQGIQEFTVELQVQYWEAI 182 >gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: tail tube protein gp19 # Family: family:all:1107 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195137;genbank:gi:58532914;goa:Q5GQN5;uni prot:Q5GQN5;genbank:GeneID:3260390 Length = 204 Score = 89.4 bits (220), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 16 GAKSDKYFIEIGTPLGAPEVAFTEEDI-ILCKTASFPERTLGEVEAFVQGRKLKLPGDST 74 G K + + ++I P P + + I +LCK+A+ P LG +E +GR +K+ GD T Sbjct: 15 GVKPNMFMVDIVFPNEVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGDRT 74 Query: 75 FDAAWSPVFYQTPDHNIRAKFLTWIDKIDVYKNNYHTCDPYSL----MVTAKVHQVNCNG 130 FD W+ F + IR F W+++I+ ++ N SL KV Q+ NG Sbjct: 75 FDT-WTATFVNDKEMKIRGYFEQWLEQINTHETNNAPLFTPSLDSGYARNLKVKQLEKNG 133 Query: 131 ----EPVATYEFFNVWPSKVGEIEVAADKTNSIQEFTVDFTYSHWE 172 E + Y + +P+ V +I+VA D + I+EFTV+F YS+W+ Sbjct: 134 SESGEVLREYVLYYGFPTNVSQIDVAYDSNDQIEEFTVEFQYSYWK 179 >gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899603;genbank:gi:34419590;genbank:GeneID :2545785 Length = 166 Score = 70.5 bits (171), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 7/166 (4%) Query: 6 VDKLANALKGGAKSDKYFIEIGTPLGAPEVAFTEEDIILCKTASFPERTLGEVEAFVQGR 65 VD + A G + E+ P F C+ +S P ++ +VE Q R Sbjct: 5 VDNIKRAFSNGDFARPNLFEVEIPYLGQNFKFQ------CRASSMPPGSVEKVEVSYQNR 58 Query: 66 KLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDVYKNNYHTCDPYSLMVTAKVHQ 125 K + GD TFD W+ Y H+IR + W + + P T + Q Sbjct: 59 KYNIAGDRTFDD-WNVTVYNDETHDIRKAIMAWQARAVGLGKDISGETPDQYKRTGTITQ 117 Query: 126 VNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEFTVDFTYSHW 171 ++ NG+P + + ++P+ VGE+ + D N I+ F V F+ ++ Sbjct: 118 LDRNGDPTTSATVYGIFPTVVGEVALDWDSNNEIETFEVTFSLDYF 163 >gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944107;genbank:gi:38640151;genbank:GeneID :2657917 Length = 162 Score = 70.1 bits (170), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 2/140 (1%) Query: 34 EVAFTEEDIIL-CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIR 92 E+ F +D CK AS P + V Q +K+KL GD TF+ W+ Y HN R Sbjct: 24 EIPFMGKDFKFKCKGASMPPGVVEPVPVSYQNKKMKLAGDRTFED-WTITVYNDEAHNTR 82 Query: 93 AKFLTWIDKIDVYKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVA 152 +F+ W + N P S A V Q++ G+ Y + WP+ + EI ++ Sbjct: 83 QQFIEWQNLAQALDRNILGEAPASYKKEATVRQLDRKGKQTRQYTVYGAWPTNIAEIALS 142 Query: 153 ADKTNSIQEFTVDFTYSHWE 172 D+ N ++ F V + W+ Sbjct: 143 WDQNNEVETFEVTLSIDWWQ 162 >gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239197;genbank:gi:66391672;genbank:GeneID :3416366 Length = 161 Score = 67.8 bits (164), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 1/128 (0%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 CK A+ P T+ +V Q RK+ + GD T+D W+ Y HN R + W + + Sbjct: 35 CKAATMPAATVEKVPVGYQNRKINVAGDRTYDD-WTITIYNDDAHNTRDALVAWSNMMHG 93 Query: 105 YKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEFTV 164 + P + TA V Q N N E A + ++P+ VGE+ + D N I F Sbjct: 94 MGDQISGDIPANYKKTATVKQKNRNDEITAEHTIHGLFPTNVGEVTLDWDSNNEISTFEC 153 Query: 165 DFTYSHWE 172 F WE Sbjct: 154 TFALDWWE 161 >gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: gp130 # Family: family:all:1107 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717797;genbank:gi:113200634;genbank:GeneI D:4239185 Length = 202 Score = 67.0 bits (162), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 14/143 (9%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 + A+ P +G VE +GR LK+ GD TF+ W+ +R F W KI Sbjct: 49 VRAANLPSSQIGVVEVPFRGRVLKIAGDRTFEP-WTITVMNDSSFRLRKIFEKWAQKIQA 107 Query: 105 YKNNYHTC-------DPYSLMVTAKVHQVNCN------GEPVATYEFFNVWPSKVGEIEV 151 Y N+ D VHQ++ + +P+ +Y+F +V+PS + I++ Sbjct: 108 YNENFTAAGTLGNADDSAGYFADMYVHQLSRDIRDGRKPQPLRSYKFIDVFPSNISSIDL 167 Query: 152 AADKTNSIQEFTVDFTYSHWEKI 174 ++I+EFTV+ +W+ + Sbjct: 168 DFGSNDAIEEFTVELQVQYWKPV 190 >gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214664;genbank:gi:61806305;genbank:GeneID :3294559 Length = 196 Score = 63.9 bits (154), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 19/164 (11%) Query: 30 LGAPEVAFTEEDII-----LCKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFY 84 L P + D++ + A+ P +G +E +GR LK+ GD TF+ W+ Sbjct: 28 LAFPSEILQDSDLVNLGKFTVRAANLPSSQIGVIEVPFRGRVLKIAGDRTFEP-WTITIM 86 Query: 85 QTPDHNIRAKFLTWIDKIDVYKNNYHTC-------DPYSLMVTAKVHQVNCN---GEP-- 132 +R+ W I Y N+ + D VHQ+ + GE Sbjct: 87 NDSQFKLRSAMELWASSIQAYNENFTSAGSLGDNSDSSGYFADMTVHQLARDLKDGESPK 146 Query: 133 -VATYEFFNVWPSKVGEIEVAADKTNSIQEFTVDFTYSHWEKIA 175 + +Y+F+N++PS + I++ ++++EFTV+ +W+ + Sbjct: 147 ILKSYKFYNIFPSNIAAIDLDYGNNDAVEEFTVEMQVQYWKPVG 190 >gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891726;genbank:gi:33620609;genbank:GeneID :1725319 Length = 164 Score = 63.2 bits (152), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 43 ILCKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKI 102 ++CK A+ P T+ ++ Q RK+ + GD +D W+ + H IR + W D+ Sbjct: 36 LMCKAATVPAATVEKIAIGYQNRKINIAGDRVYDD-WTITVFNDDAHKIRDAIVAWSDQT 94 Query: 103 DVYKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEF 162 + P A V Q+N N E + + ++P+ VGE+ + ++ N ++ F Sbjct: 95 HGTGSAITGATPAQYKKQAIVRQLNRNTESTSEKTLYGIFPTNVGEVTLDWEQNNEVETF 154 Query: 163 TVDF 166 V F Sbjct: 155 EVTF 158 >gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469500;genbank:gi:157311457;genbank:Ge neID:5602118 Length = 164 Score = 63.2 bits (152), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 43 ILCKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKI 102 ++CK A+ P T+ ++ Q RK+ + GD +D W+ + H IR + W D+ Sbjct: 36 LMCKAATVPAATVEKIAIGYQNRKINIAGDRVYDD-WTITVFNDDAHKIRDAIVAWSDQT 94 Query: 103 DVYKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEF 162 + P A V Q+N N E + + ++P+ VGE+ + ++ N ++ F Sbjct: 95 HGTGSAITGATPAQYKKQAIVRQLNRNTESTSEKTLYGIFPTNVGEVTLDWEQNNEVETF 154 Query: 163 TVDF 166 V F Sbjct: 155 EVTF 158 >gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595295;genbank:gi:161622601;genbank:Ge neID:5783767 Length = 163 Score = 59.7 bits (143), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 8/165 (4%) Query: 9 LANALKGGAKSDKYFIEIGTPLGAPEVAFTEEDIILCKTASFPERTLGEVEAFVQGRKLK 68 + A + G + E+ P +F CK A P + +V RK+ Sbjct: 6 ITRAFESGDFARPNLFEVEIPFLGKNFSFK------CKAAPMPAGIVEKVPVGYMNRKIN 59 Query: 69 LPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDVYKNNYHTCDPYSLMVTAKVHQVNC 128 + GD TFD W+ Y H+ R + W + N P A V Q + Sbjct: 60 VAGDRTFDD-WTITIYNDDAHDTRQAIVDWQNLCHGMTNEITGAAPAEYKKQAVVRQFHR 118 Query: 129 NGEPVAT-YEFFNVWPSKVGEIEVAADKTNSIQEFTVDFTYSHWE 172 +G+ V + +WP+ VGE+++ D N ++ F F WE Sbjct: 119 DGKTVTKEVTIYGLWPTNVGEVQMDWDSNNEVETFESTFAIDWWE 163 >gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049781;genbank:gi:9632593;genbank:GeneID: 1258727 Length = 163 Score = 59.7 bits (143), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 2/129 (1%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 CK + P + ++ RK+ + GD TFD W+ H+ R KF+ W Sbjct: 36 CKATALPAGIVEKIPVGFMNRKINVAGDRTFDD-WTVTVMNDEAHDARQKFVDWQSIAAG 94 Query: 105 YKNNYHTCDPYSLMVTAKVHQVNCNGEPVAT-YEFFNVWPSKVGEIEVAADKTNSIQEFT 163 N P +A V Q + + V E +WP+ VGE+++ D N IQ F Sbjct: 95 QGNEITGGKPAEYKKSAIVRQYARDAKTVTKEIEIKGLWPTNVGELQLDWDSNNEIQTFE 154 Query: 164 VDFTYSHWE 172 V +WE Sbjct: 155 VTLALDYWE 163 >gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: tail tube monomer # Family: family:all:1107 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803109;genbank:gi:116326389;genbank:GeneI D:4405486 Length = 163 Score = 59.7 bits (143), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 2/129 (1%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 CK + P + ++ RK+ + GD TFD W+ H+ R KF+ W Sbjct: 36 CKATALPAGIVEKIPVGFMNRKINVAGDRTFDD-WTITVMNDEAHDARQKFVDWQSIAAG 94 Query: 105 YKNNYHTCDPYSLMVTAKVHQVNCNGEPVAT-YEFFNVWPSKVGEIEVAADKTNSIQEFT 163 N P +A V Q + + V E +WP+ VGE+++ D N IQ F Sbjct: 95 QGNEITGGKPAEYKKSAIVRQYARDAKTVTKEVEIKGLWPTNVGELQLDWDSNNEIQTFE 154 Query: 164 VDFTYSHWE 172 V +WE Sbjct: 155 VTLALDYWE 163 >gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238882;genbank:gi:66391957;genbank:GeneID :3416632 Length = 162 Score = 58.9 bits (141), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 CK + P T+ ++ RKL + GD +D W+ Y H R + W Sbjct: 36 CKAGTMPAATVEKIPVGYMNRKLNIAGDRIYDD-WTVTIYNDSAHITRQAIVDWNAMTHG 94 Query: 105 YKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEFTV 164 N P + V Q + NGE Y ++P+ VGE+ + D N++ F V Sbjct: 95 MGNTITGDIPEAYKKPGVVRQKDRNGESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTFEV 154 Query: 165 DFTYSHWE 172 F WE Sbjct: 155 TFALDWWE 162 >gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932510;genbank:gi:37651636;genbank:GeneID :2610681 Length = 162 Score = 58.9 bits (141), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 CK + P T+ ++ RKL + GD +D W+ Y H R + W Sbjct: 36 CKAGTMPAATVEKIPVGYMNRKLNIAGDRIYDD-WTVTIYNDSAHITRQAIVDWNAMTHG 94 Query: 105 YKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEFTV 164 N P + V Q + NGE Y ++P+ VGE+ + D N++ F V Sbjct: 95 MGNTITGDIPEAYKKPGVVRQKDRNGESTKEYAIIGLFPTNVGEVTLDWDDNNTVSTFEV 154 Query: 165 DFTYSHWE 172 F WE Sbjct: 155 TFALDWWE 162 >gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861871;genbank:gi:32453662;genbank:GeneID :1494297 Length = 163 Score = 58.5 bits (140), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 C+ + P + +V RK+ + GD TFD W+ H+IR KF+ W Sbjct: 36 CRATALPAAIVEKVPVSYMNRKINVAGDRTFDD-WTITVMNDDAHSIRQKFVDWQGIAAG 94 Query: 105 YKNNYHTCDPYSLMVTAKVHQVNCNGEPVAT-YEFFNVWPSKVGEIEVAADKTNSIQEFT 163 N P +A V Q + + V E +WP+ VGE+ + D N I+ F Sbjct: 95 QGNEITGGKPAEYKKSAIVRQFARDAKTVTKEVEIVGLWPTNVGEVSLDWDSNNEIETFE 154 Query: 164 VDFTYSHWE 172 V WE Sbjct: 155 VTLALDWWE 163 >gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656381;genbank:gi:109290132;genbank:GeneI D:4156575 Length = 163 Score = 43.9 bits (102), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/128 (21%), Positives = 47/128 (36%) Query: 45 CKTASFPERTLGEVEAFVQGRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKIDV 104 K + P T+ ++ RKL + GD FD ++ + + + W Sbjct: 36 AKAGTMPAATVEKIPVGYMNRKLNVAGDRIFDDWTITIYTDSAPITLDRQLSDWNAMTHG 95 Query: 105 YKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFNVWPSKVGEIEVAADKTNSIQEFTV 164 N P + V Q + NG Y ++P+ VGE+ + D N++ F Sbjct: 96 MGNEITGDIPEAYKKPGIVRQKDRNGNTTKEYTIVGLFPTNVGEVTLDWDDNNTVSTFET 155 Query: 165 DFTYSHWE 172 F WE Sbjct: 156 TFALDWWE 163 >gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: putative ATP-dependent DNA helicase # Family: family:all:1546 # MgeID: mge:1500 # MgeName: phiEL # Cross-refs: genbank:acc:YP_418044;genbank:gi:82700944;goa:Q2Z170;int erpro:IPR000871;uniprot:Q2Z170;genbank:GeneID:5176636 Length = 1088 Score = 28.1 bits (61), Expect = 0.057, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 9 LANALKGGAKSDKYFIEIGTPLGAPEVAFTEEDIILCKTASFPERTLGEVEAFV 62 LA +L G K K +EI P P F EE+++ F R L E FV Sbjct: 420 LARSLGGTGKVTKNGVEITLPEEVPPFKFREENVV------FDNRLLIERVTFV 467 >gi|5997|lcl|protein:vir:95545 Length: 195 # NCBI annotation: hypothetical protein # Family: family:all:10964 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293365;genbank:gi:148912786;genbank:Ge neID:5228197 Length = 195 Score = 24.3 bits (51), Expect = 0.91, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 77 AAWSPVFYQTPDHNIRAKFLTWIDKI 102 A +PV P H + +L WID + Sbjct: 36 APTAPVRLTIPGHGLPVTWLAWIDGV 61 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 22.7 bits (47), Expect = 2.8, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 5 TVDKLANALKGGAK-SDKYFIEIGTPLGAPEVAFTEEDIIL 44 T D ++ + G K ++ FI+I T P V F E+ I+ Sbjct: 241 TRDAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQRIM 281 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 22.7 bits (47), Expect = 2.8, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 20 DKYFIEIGTPLGAPEVAFTEEDIIL 44 ++ FI+I T P V F E+ +I+ Sbjct: 257 NRQFIQISTAYPNPSVPFREDQMIM 281 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID :1258503 Length = 369 Score = 21.9 bits (45), Expect = 5.2, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 20 DKYFIEIGTPLGAPEVAFTEEDIIL 44 ++ FI+I T P V F E+ IL Sbjct: 3 NRQFIQISTAYPNPSVPFREDQKIL 27 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 21.2 bits (43), Expect = 7.0, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 23 FIEIGTPLGAPEVAFTEE 40 FIEI T P+V F +E Sbjct: 262 FIEISTSYQTPDVPFHQE 279 >gi|15919|lcl|protein:vir:3429 Length: 246 # NCBI annotation: tail component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040592;genbank:gi:9626256;genbank:GeneID: 2703487 Length = 246 Score = 21.2 bits (43), Expect = 8.1, Method: Compositional matrix adjust. Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 6/40 (15%) Query: 64 GRKLKLPGDSTFDAAWSPVFYQTPDHNIRAKFLTWIDKID 103 G+ K GD++F AW P + L W ++ D Sbjct: 71 GQGQKSAGDTSFTLAW------MPGEQGQQALLAWFNEGD 104 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 21.2 bits (43), Expect = 8.4, Method: Compositional matrix adjust. Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 100 DKIDVYKNNYHTCDPYSLMVTAKVHQVNCNGEPVATYEFFN-VWPSKVGEIEV 151 + I++Y+ + H C P+ + +V ++ +G + T++ F P + G+ E+ Sbjct: 27 EAIEIYEKSKHECYPWQKNLLKEVMAIDEDG--LWTHQKFGYSIPRRNGKTEI 77 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.135 0.419 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,916 Number of Sequences: 514 Number of extensions: 3692 Number of successful extensions: 49 Number of sequences better than 100.0: 24 Number of HSP's better than 100.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 24 length of query: 175 length of database: 206,069 effective HSP length: 66 effective length of query: 109 effective length of database: 172,145 effective search space: 18763805 effective search space used: 18763805 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 34 (17.7 bits)