Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P-SSM4 | Genbank acc : NC_006884 | Aclame index mge :1548

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 198

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	109	lcl\|Aclame:protein:vir:104549\|NCBI_annot:gp23\|genbank:acc:YP_214669;genbank:gi:61806310;genbank:Gene	HHsearch (proba=100.00%)
Portal	105	lcl\|Aclame:protein:vir:104500\|NCBI_annot:gp20\|genbank:acc:YP_214665;genbank:gi:61806306;genbank:Gene	HHsearch (proba=100.00%)
TermL	102	lcl\|Aclame:protein:vir:104536\|NCBI_annot:gp17\|genbank:acc:YP_214662;genbank:gi:61806303;genbank:Gene	Blast (e-value=0)
MTP	104	lcl\|Aclame:protein:vir:104504\|NCBI_annot:gp19\|genbank:acc:YP_214664;genbank:gi:61806305;genbank:Gene	Blast (e-value=1e-115)
Sheath	103	lcl\|Aclame:protein:vir:104477\|NCBI_annot:gp18\|genbank:acc:YP_214663;genbank:gi:61806304;genbank:Gene	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	89	lcl\|Aclame:protein:vir:104585\|NCBI_annot:gp13\|genbank:acc:YP_214649;genbank:gi:61806290;genbank:Gene	HHsearch (proba=100.00%)
Hc2	90	lcl\|Aclame:protein:vir:104476\|NCBI_annot:gp14\|genbank:acc:YP_214650;genbank:gi:61806291;genbank:Gene	HHsearch (proba=100.00%)
Tc2	91	lcl\|Aclame:protein:vir:104479\|NCBI_annot:gp15\|genbank:acc:YP_214651;genbank:gi:61806292;genbank:Gene	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104549 protein:vir:103181 protein:vir:106998	P-SSM4 Syn9 S-PM2	100 % 85 % 65 %
Portal	protein:vir:104500 protein:vir:103177 protein:vir:106999	P-SSM4 Syn9 S-PM2	100 % 79 % 56 %
TermL	protein:vir:104536 protein:vir:103169 protein:vir:104946	P-SSM4 Syn9 P-SSM2	100 % 80 % 69 %
MTP	protein:vir:104504 protein:vir:103176 protein:vir:104771	P-SSM4 Syn9 P-SSM2	100 % 69 % 46 %
Sheath	protein:vir:104477 protein:vir:103168 protein:vir:106984	P-SSM4 Syn9 S-PM2	100 % 64 % 38 %
Ad2	protein:vir:104585 protein:vir:103004 protein:vir:104694	P-SSM4 Syn9 P-SSM2	100 % 82 % 37 %
Hc2	protein:vir:104476 protein:vir:103005 protein:vir:106986	P-SSM4 Syn9 S-PM2	100 % 63 % 46 %
Tc2	protein:vir:104479 protein:vir:103006 protein:vir:104695	P-SSM4 Syn9 P-SSM2	100 % 71 % 49 %