Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RB43 | Genbank acc : NC_007023 | Aclame index mge :1667

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 292

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	227	lcl\|Aclame:protein:vir:98143\|NCBI_annot:gp23	HHsearch (proba=100.00%)
Portal	222	lcl\|Aclame:protein:vir:98265\|NCBI_annot:gp20	HHsearch (proba=100.00%)
TermL	219	lcl\|Aclame:protein:vir:98262\|NCBI_annot:gp17	Blast (e-value=0)
MTP	221	lcl\|Aclame:protein:vir:98264\|NCBI_annot:gp19	Blast (e-value=1e-95)
Sheath	220	lcl\|Aclame:protein:vir:98263\|NCBI_annot:gp18	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	214	lcl\|Aclame:protein:vir:98189\|NCBI_annot:gp13	HHsearch (proba=100.00%)
Hc2	215	lcl\|Aclame:protein:vir:98258\|NCBI_annot:gp14	HHsearch (proba=100.00%)
Tc2	217	lcl\|Aclame:protein:vir:98260\|NCBI_annot:gp15	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98143 protein:vir:100603 protein:vir:101039	RB43 25 44RR2.8t	100 % 76 % 73 %
Portal	protein:vir:98265 protein:vir:101189 protein:vir:101806	RB43 44RR2.8t 31	100 % 59 % 59 %
TermL	protein:vir:98262 protein:vir:108053 protein:vir:101186	RB43 JS98 44RR2.8t	100 % 69 % 69 %
MTP	protein:vir:98264 protein:vir:101188 protein:vir:101805	RB43 44RR2.8t 31	100 % 75 % 75 %
Sheath	protein:vir:98263 protein:vir:108052 protein:vir:101187	RB43 JS98 44RR2.8t	100 % 64 % 62 %
Ad2	protein:vir:98189 protein:vir:107900 protein:vir:81013	RB43 JS98 Phi1	100 % 57 % 54 %
Hc2	protein:vir:98258 protein:vir:80995 protein:vir:6590	RB43 Phi1 RB49	100 % 54 % 54 %
Tc2	protein:vir:98260 protein:vir:107931 protein:vir:81023	RB43 JS98 Phi1	100 % 54 % 53 %