Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-PM2 | Genbank acc : NC_006820 | Aclame index mge :1459

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 236

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	108	lcl\|Aclame:protein:vir:106998\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	104	lcl\|Aclame:protein:vir:106999\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	100	lcl\|Aclame:protein:vir:106989\|NCBI_annot:terminase	Blast (e-value=0)
MTP	103	lcl\|Aclame:protein:vir:106918\|NCBI_annot:tail	Blast (e-value=1e-121)
Sheath	102	lcl\|Aclame:protein:vir:106984\|NCBI_annot:contractile	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	93	lcl\|Aclame:protein:vir:106985\|NCBI_annot:neck	HHsearch (proba=100.00%)
Hc2	94	lcl\|Aclame:protein:vir:106986\|NCBI_annot:neck	HHsearch (proba=100.00%)
Tc2	95	lcl\|Aclame:protein:vir:106987\|NCBI_annot:proximal	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106998 protein:vir:103181 protein:vir:104549	S-PM2 Syn9 P-SSM4	100 % 66 % 66 %
Portal	protein:vir:106999 protein:vir:103177 protein:vir:104892	S-PM2 Syn9 P-SSM2	100 % 59 % 56 %
TermL	protein:vir:106989 protein:vir:104946 protein:vir:103169	S-PM2 P-SSM2 Syn9	100 % 70 % 67 %
MTP	protein:vir:106918 protein:vir:104771 protein:vir:104504	S-PM2 P-SSM2 P-SSM4	100 % 43 % 41 %
Sheath	protein:vir:106984 protein:vir:104858 protein:vir:104477	S-PM2 P-SSM2 P-SSM4	100 % 38 % 38 %
Ad2	protein:vir:106985 protein:vir:104694 protein:vir:103004	S-PM2 P-SSM2 Syn9	100 % 50 % 37 %
Hc2	protein:vir:106986 protein:vir:104476 protein:vir:103005	S-PM2 P-SSM4 Syn9	100 % 46 % 45 %
Tc2	protein:vir:106987 protein:vir:103006 protein:vir:104479	S-PM2 Syn9 P-SSM4	100 % 54 % 50 %