Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Aeh1 | Genbank acc : NC_005260 | Aclame index mge :1474

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 352

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	235	lcl\|Aclame:protein:vir:106286\|NCBI_annot:gp23	HHsearch (proba=100.00%)
Portal	230	lcl\|Aclame:protein:vir:106282\|NCBI_annot:gp20	HHsearch (proba=100.00%)
TermL	227	lcl\|Aclame:protein:vir:106290\|NCBI_annot:gp17	Blast (e-value=0)
MTP	229	lcl\|Aclame:protein:vir:106171\|NCBI_annot:gp19	Blast (e-value=5e-96)
Sheath	228	lcl\|Aclame:protein:vir:106427\|NCBI_annot:gp18	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	222	lcl\|Aclame:protein:vir:106428\|NCBI_annot:gp13	HHsearch (proba=100.00%)
Hc2	223	lcl\|Aclame:protein:vir:106285\|NCBI_annot:gp14	HHsearch (proba=100.00%)
Tc2	225	lcl\|Aclame:protein:vir:106402\|NCBI_annot:gp15	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106286 protein:vir:103463 protein:vir:7214	Aeh1 RB32 T4	100 % 60 % 60 %
Portal	protein:vir:106282 protein:vir:100598 protein:vir:98265	Aeh1 25 RB43	100 % 53 % 52 %
TermL	protein:vir:106290 protein:vir:108053 protein:vir:7202	Aeh1 JS98 T4	100 % 60 % 60 %
MTP	protein:vir:106171 protein:vir:108048 protein:vir:5664	Aeh1 JS98 KVP40	100 % 64 % 59 %
Sheath	protein:vir:106427 protein:vir:6594 protein:vir:103456	Aeh1 RB49 RB32	100 % 54 % 54 %
Ad2	protein:vir:106428 protein:vir:81013 protein:vir:6589	Aeh1 Phi1 RB49	100 % 50 % 50 %
Hc2	protein:vir:106285 protein:vir:6590 protein:vir:103452	Aeh1 RB49 RB32	100 % 50 % 48 %
Tc2	protein:vir:106402 protein:vir:107931 protein:vir:81023	Aeh1 JS98 Phi1	100 % 53 % 51 %