Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KVP40 | Genbank acc : NC_005083 | Aclame index mge :119

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 381

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	361	lcl\|Aclame:protein:vir:5670\|NCBI_annot:gp23\|genbank:acc:NP_899609;genbank:gi:34419596;genbank:GeneID	HHsearch (proba=100.00%)
Portal	356	lcl\|Aclame:protein:vir:5665\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	353	lcl\|Aclame:protein:vir:5662\|NCBI_annot:terminase	Blast (e-value=0)
MTP	355	lcl\|Aclame:protein:vir:5664\|NCBI_annot:gp19\|genbank:acc:NP_899603;genbank:gi:34419590;genbank:GeneID	Blast (e-value=1e-97)
Sheath	354	lcl\|Aclame:protein:vir:5663\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	348	lcl\|Aclame:protein:vir:5657\|NCBI_annot:gp13\|genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID	HHsearch (proba=100.00%)
Hc2	349	lcl\|Aclame:protein:vir:5658\|NCBI_annot:gp14\|genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID	HHsearch (proba=100.00%)
Tc2	350	lcl\|Aclame:protein:vir:5659\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5670 protein:vir:100603 protein:vir:107947	KVP40 25 JS98	100 % 62 % 61 %
Portal	protein:vir:5665 protein:vir:98265 protein:vir:101189	KVP40 RB43 44RR2.8t	100 % 49 % 48 %
TermL	protein:vir:5662 protein:vir:106290 protein:vir:98262	KVP40 Aeh1 RB43	100 % 55 % 54 %
MTP	protein:vir:5664 protein:vir:80985 protein:vir:6595	KVP40 Phi1 RB49	100 % 59 % 59 %
Sheath	protein:vir:5663 protein:vir:101187 protein:vir:101804	KVP40 44RR2.8t 31	100 % 53 % 53 %
Ad2	protein:vir:5657 protein:vir:81013 protein:vir:6589	KVP40 Phi1 RB49	100 % 48 % 48 %
Hc2	protein:vir:5658 protein:vir:103452 protein:vir:7199	KVP40 RB32 T4	100 % 45 % 45 %
Tc2	protein:vir:5659 protein:vir:98260 protein:vir:100536	KVP40 RB43 25	100 % 39 % 38 %