Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RB69 | Genbank acc : NC_004928 | Aclame index mge :140

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 273

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	187	lcl\|Aclame:protein:vir:6901\|NCBI_annot:gp23	HHsearch (proba=100.00%)
Portal	182	lcl\|Aclame:protein:vir:6896\|NCBI_annot:gp20	HHsearch (proba=100.00%)
TermL	179	lcl\|Aclame:protein:vir:6893\|NCBI_annot:gp17	Blast (e-value=0)
MTP	181	lcl\|Aclame:protein:vir:6895\|NCBI_annot:gp19	Blast (e-value=1e-94)
Sheath	180	lcl\|Aclame:protein:vir:6894\|NCBI_annot:gp18	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	175	lcl\|Aclame:protein:vir:6889\|NCBI_annot:gp13	HHsearch (proba=100.00%)
Hc2	176	lcl\|Aclame:protein:vir:6890\|NCBI_annot:gp14	HHsearch (proba=100.00%)
Tc2	177	lcl\|Aclame:protein:vir:6891\|NCBI_annot:gp15	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:6901 protein:vir:103463 protein:vir:7214	RB69 RB32 T4	100 % 95 % 94 %
Portal	protein:vir:6896 protein:vir:103458 protein:vir:7208	RB69 RB32 T4	100 % 90 % 89 %
TermL	protein:vir:6893 protein:vir:103455 protein:vir:7202	RB69 RB32 T4	100 % 90 % 90 %
MTP	protein:vir:6895 protein:vir:103457 protein:vir:7207	RB69 RB32 T4	100 % 90 % 88 %
Sheath	protein:vir:6894 protein:vir:103456 protein:vir:7206	RB69 RB32 T4	100 % 83 % 83 %
Ad2	protein:vir:6889 protein:vir:103451 protein:vir:7198	RB69 RB32 T4	100 % 85 % 84 %
Hc2	protein:vir:6890 protein:vir:103452 protein:vir:7199	RB69 RB32 T4	100 % 89 % 89 %
Tc2	protein:vir:6891 protein:vir:103453 protein:vir:7200	RB69 RB32 T4	100 % 76 % 76 %