Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 44RR2.8t | Genbank acc : NC_005135 | Aclame index mge :1582

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 252

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	161	lcl\|Aclame:protein:vir:101039\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	156	lcl\|Aclame:protein:vir:101189\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	153	lcl\|Aclame:protein:vir:101186\|NCBI_annot:terminase	Blast (e-value=0)
MTP	155	lcl\|Aclame:protein:vir:101188\|NCBI_annot:tail	Blast (e-value=7e-95)
Sheath	154	lcl\|Aclame:protein:vir:101187\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	149	lcl\|Aclame:protein:vir:101153\|NCBI_annot:neck	HHsearch (proba=100.00%)
Hc2	150	lcl\|Aclame:protein:vir:101154\|NCBI_annot:neck	HHsearch (proba=100.00%)
Tc2	151	lcl\|Aclame:protein:vir:101155\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:101039 protein:vir:101811 protein:vir:100603	44RR2.8t 31 25	100 % 100 % 93 %
Portal	protein:vir:101189 protein:vir:101806 protein:vir:100598	44RR2.8t 31 25	100 % 100 % 91 %
TermL	protein:vir:101186 protein:vir:101803 protein:vir:100538	44RR2.8t 31 25	100 % 100 % 87 %
MTP	protein:vir:101188 protein:vir:101805 protein:vir:100597	44RR2.8t 31 25	100 % 100 % 88 %
Sheath	protein:vir:101187 protein:vir:101804 protein:vir:100539	44RR2.8t 31 25	100 % 100 % 86 %
Ad2	protein:vir:101153 protein:vir:101857 protein:vir:100534	44RR2.8t 31 25	100 % 100 % 84 %
Hc2	protein:vir:101154 protein:vir:101800 protein:vir:100535	44RR2.8t 31 25	100 % 100 % 82 %
Tc2	protein:vir:101155 protein:vir:101801 protein:vir:100536	44RR2.8t 31 25	100 % 100 % 80 %