Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JS98 | Genbank acc : NC_010105 | Aclame index mge :2002

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 245

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	158	lcl\|Aclame:protein:vir:107947\|NCBI_annot:gp23	HHsearch (proba=100.00%)
Portal	153	lcl\|Aclame:protein:vir:108049\|NCBI_annot:gp20	HHsearch (proba=100.00%)
TermL	150	lcl\|Aclame:protein:vir:108053\|NCBI_annot:gp17	Blast (e-value=0)
MTP	152	lcl\|Aclame:protein:vir:108048\|NCBI_annot:gp19	Blast (e-value=2e-96)
Sheath	151	lcl\|Aclame:protein:vir:108052\|NCBI_annot:gp18	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	146	lcl\|Aclame:protein:vir:107900\|NCBI_annot:gp13	HHsearch (proba=100.00%)
Hc2	147	lcl\|Aclame:protein:vir:107937\|NCBI_annot:gp14	HHsearch (proba=100.00%)
Tc2	148	lcl\|Aclame:protein:vir:107931\|NCBI_annot:gp15	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107947 protein:vir:7214 protein:vir:103463	JS98 T4 RB32	100 % 85 % 84 %
Portal	protein:vir:108049 protein:vir:7208 protein:vir:6896	JS98 T4 RB69	100 % 76 % 76 %
TermL	protein:vir:108053 protein:vir:6893 protein:vir:103455	JS98 RB69 RB32	100 % 84 % 83 %
MTP	protein:vir:108048 protein:vir:6895 protein:vir:98264	JS98 RB69 RB43	100 % 75 % 74 %
Sheath	protein:vir:108052 protein:vir:103456 protein:vir:7206	JS98 RB32 T4	100 % 73 % 72 %
Ad2	protein:vir:107900 protein:vir:103451 protein:vir:7198	JS98 RB32 T4	100 % 66 % 66 %
Hc2	protein:vir:107937 protein:vir:103452 protein:vir:7199	JS98 RB32 T4	100 % 69 % 69 %
Tc2	protein:vir:107931 protein:vir:7200 protein:vir:103453	JS98 T4 RB32	100 % 59 % 58 %