Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RB32 | Genbank acc : NC_008515 | Aclame index mge :1542

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 270

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	173	lcl\|Aclame:protein:vir:103463\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	168	lcl\|Aclame:protein:vir:103458\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	165	lcl\|Aclame:protein:vir:103455\|NCBI_annot:terminase	Blast (e-value=0)
MTP	167	lcl\|Aclame:protein:vir:103457\|NCBI_annot:tail	Blast (e-value=3e-95)
Sheath	166	lcl\|Aclame:protein:vir:103456\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	161	lcl\|Aclame:protein:vir:103451\|NCBI_annot:neck	HHsearch (proba=100.00%)
Hc2	162	lcl\|Aclame:protein:vir:103452\|NCBI_annot:head	HHsearch (proba=100.00%)
Tc2	163	lcl\|Aclame:protein:vir:103453\|NCBI_annot:proximal	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103463 protein:vir:7214 protein:vir:6901	RB32 T4 RB69	100 % 98 % 95 %
Portal	protein:vir:103458 protein:vir:7208 protein:vir:6896	RB32 T4 RB69	100 % 99 % 90 %
TermL	protein:vir:103455 protein:vir:7202 protein:vir:6893	RB32 T4 RB69	100 % 99 % 90 %
MTP	protein:vir:103457 protein:vir:7207 protein:vir:6895	RB32 T4 RB69	100 % 99 % 90 %
Sheath	protein:vir:103456 protein:vir:7206 protein:vir:6894	RB32 T4 RB69	99 % 99 % 83 %
Ad2	protein:vir:103451 protein:vir:7198 protein:vir:6889	RB32 T4 RB69	100 % 98 % 85 %
Hc2	protein:vir:103452 protein:vir:7199 protein:vir:6890	RB32 T4 RB69	100 % 99 % 89 %
Tc2	protein:vir:103453 protein:vir:7200 protein:vir:6891	RB32 T4 RB69	100 % 99 % 76 %