Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Phi1 | Genbank acc : NC_009821 | Aclame index mge :1888

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	30	lcl\|Aclame:protein:vir:80986\|NCBI_annot:gp23	HHsearch (proba=100.00%)
Portal	25	lcl\|Aclame:protein:vir:81017\|NCBI_annot:gp20	HHsearch (proba=100.00%)
TermL	22	lcl\|Aclame:protein:vir:80989\|NCBI_annot:gp17	Blast (e-value=0)
MTP	24	lcl\|Aclame:protein:vir:80985\|NCBI_annot:gp19	Blast (e-value=5e-96)
Sheath	23	lcl\|Aclame:protein:vir:80984\|NCBI_annot:gp18	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	17	lcl\|Aclame:protein:vir:81013\|NCBI_annot:gp13	HHsearch (proba=100.00%)
Hc2	19	lcl\|Aclame:protein:vir:80995\|NCBI_annot:gp14	HHsearch (proba=100.00%)
Tc2	20	lcl\|Aclame:protein:vir:81023\|NCBI_annot:gp15	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80986 protein:vir:6601 protein:vir:101811	Phi1 RB49 31	100 % 96 % 70 %
Portal	protein:vir:81017 protein:vir:6596 protein:vir:101189	Phi1 RB49 44RR2.8t	100 % 99 % 59 %
TermL	protein:vir:80989 protein:vir:6593 protein:vir:103455	Phi1 RB49 RB32	100 % 100 % 70 %
MTP	protein:vir:80985 protein:vir:6595 protein:vir:98264	Phi1 RB49 RB43	100 % 100 % 71 %
Sheath	protein:vir:80984 protein:vir:6594 protein:vir:108052	Phi1 RB49 JS98	100 % 99 % 66 %
Ad2	protein:vir:81013 protein:vir:6589 protein:vir:6889	Phi1 RB49 RB69	100 % 100 % 64 %
Hc2	protein:vir:80995 protein:vir:6590 protein:vir:107937	Phi1 RB49 JS98	100 % 93 % 61 %
Tc2	protein:vir:81023 protein:vir:6591 protein:vir:107931	Phi1 RB49 JS98	100 % 100 % 57 %