Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SpaA1 | Genbank acc : NC_018277

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 63

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_018277.1_cdsid_YP_006560697.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_018277.1_cdsid_YP_006560693.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_018277.1_cdsid_YP_006560692.1	Blast (e-value=1e-153)
MTP	14	lcl\|NC_018277.1_cdsid_YP_006560702.1	Blast (e-value=8e-05)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_018277.1_cdsid_YP_006560698.1	HHsearch (proba=98.99%)
Hc1	11	lcl\|NC_018277.1_cdsid_YP_006560699.1	HHsearch (proba=97.83%)
Ne1	12	lcl\|NC_018277.1_cdsid_YP_006560700.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_018277.1_cdsid_YP_006560701.1	HHsearch (proba=99.80%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102605 protein:vir:105822 protein:vir:7990	Llij PMC Che8	27 % 27 % 27 %
Portal	protein:vir:105889 protein:vir:94101 protein:vir:9871	phiETA3 96 315.5	37 % 37 % 28 %
TermL	protein:vir:106551 protein:vir:102941 protein:vir:93748	Lj965 EJ-1 55	60 % 57 % 26 %
MTP	protein:vir:78053 protein:vir:9765 protein:vir:98437	P35 315.3 VWB	24 % 21 % 17 %
Ad1	protein:vir:106583 protein:vir:3970 protein:vir:3615	Lj965 ul36 TP901-1	21 % 22 % 21 %
Hc1	protein:vir:78048 protein:vir:80382 protein:vir:97237	P35 BcepGomr M6	22 % 17 % 12 %
Ne1	protein:vir:5978 protein:vir:97327 protein:vir:1243	SPP1 52A phi ETA	39 % 34 % 34 %
Tc1	protein:vir:78057 protein:vir:1244 protein:vir:96125	P35 phi ETA 37	16 % 15 % 18 %