Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 315.3 | Genbank acc : NC_004586 | Aclame index mge :175

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|Aclame:protein:vir:9759\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	25	lcl\|Aclame:protein:vir:9751\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	31	lcl\|Aclame:protein:vir:9757\|NCBI_annot:putative	Blast (e-value=0)
MTP	39	lcl\|Aclame:protein:vir:9765\|NCBI_annot:putative	Blast (e-value=1e-112)
Sheath	NOT FOUND
Ad1	35	lcl\|Aclame:protein:vir:9761\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	36	lcl\|Aclame:protein:vir:9762\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	37	lcl\|Aclame:protein:vir:9763\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	38	lcl\|Aclame:protein:vir:9764\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9759 protein:vir:9574 protein:vir:94771	315.3 SM1 phi LC3	100 % 64 % 63 %
Portal	protein:vir:9751 protein:vir:9568 protein:vir:94742	315.3 SM1 phi LC3	100 % 64 % 64 %
TermL	protein:vir:9757 protein:vir:94734 protein:vir:9572	315.3 phi LC3 SM1	100 % 70 % 70 %
MTP	protein:vir:9765 protein:vir:1644 protein:vir:9580	315.3 r1t SM1	100 % 58 % 58 %
Ad1	protein:vir:9761 protein:vir:9576 protein:vir:94761	315.3 SM1 phi LC3	100 % 68 % 67 %
Hc1	protein:vir:9762 protein:vir:94767 protein:vir:1641	315.3 phi LC3 r1t	100 % 71 % 69 %
Ne1	protein:vir:9763 protein:vir:94763 protein:vir:1642	315.3 phi LC3 r1t	100 % 67 % 67 %
Tc1	protein:vir:9764 protein:vir:1643 protein:vir:94768	315.3 r1t phi LC3	100 % 64 % 63 %