Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P35 | Genbank acc : NC_009814 | Aclame index mge :1844

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:78090\|NCBI_annot:Cps\|genbank:acc:YP_001468790;genbank:gi:157325371;genbank:Ge	HHsearch (proba=100.00%)
Portal	2	lcl\|Aclame:protein:vir:78083\|NCBI_annot:gp3\|genbank:acc:YP_001468787;genbank:gi:157325368;genbank:Ge	HHsearch (proba=100.00%)
TermL	1	lcl\|Aclame:protein:vir:78055\|NCBI_annot:TerL\|genbank:acc:YP_001468786;genbank:gi:157325367;genbank:G	Blast (e-value=0)
MTP	10	lcl\|Aclame:protein:vir:78053\|NCBI_annot:gp11\|genbank:acc:YP_001468795;genbank:gi:157325376;genbank:G	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	6	lcl\|Aclame:protein:vir:78068\|NCBI_annot:gp7\|genbank:acc:YP_001468791;genbank:gi:157325372;genbank:Ge	HHsearch (proba=100.00%)
Hc1	7	lcl\|Aclame:protein:vir:78048\|NCBI_annot:gp8\|genbank:acc:YP_001468792;genbank:gi:157325373;genbank:Ge	HHsearch (proba=100.00%)
Ne1	8	lcl\|Aclame:protein:vir:78077\|NCBI_annot:gp9\|genbank:acc:YP_001468793;genbank:gi:157325374;genbank:Ge	HHsearch (proba=100.00%)
Tc1	9	lcl\|Aclame:protein:vir:78057\|NCBI_annot:gp10\|genbank:acc:YP_001468794;genbank:gi:157325375;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78090 protein:vir:102335 protein:vir:78920	P35 phi CD119 A006	100 % 28 % 26 %
Portal	protein:vir:78083 protein:vir:79043 protein:vir:5961	P35 phiC2 SPP1	100 % 25 % 22 %
TermL	protein:vir:78055 protein:vir:96840 protein:vir:107098	P35 EW CNPH82	100 % 31 % 31 %
MTP	protein:vir:78053 protein:vir:7453 protein:vir:80670	P35 Barnyard PA6	100 % 15 % 17 %
Ad1	protein:vir:78068 protein:vir:96128 protein:vir:97329	P35 37 52A	100 % 21 % 20 %
Hc1	protein:vir:78048 protein:vir:81177 protein:vir:4459	P35 Geobacillus virus E2 ST64B	100 % 15 % 13 %
Ne1	protein:vir:78077 protein:vir:97327 protein:vir:1243	P35 52A phi ETA	100 % 24 % 24 %
Tc1	protein:vir:78057 protein:vir:96485 protein:vir:4907	P35 2972 Sfi11	100 % 9 % 9 %