Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P12026 | Genbank acc : NC_018269

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 54

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_018269.1_cdsid_YP_006560245.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_018269.1_cdsid_YP_006560243.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_018269.1_cdsid_YP_006560240.1	Blast (e-value=1e-125)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	9	lcl\|NC_018269.1_cdsid_YP_006560247.1	HHsearch (proba=100.00%)
Hc1	10	lcl\|NC_018269.1_cdsid_YP_006560248.1	HHsearch (proba=100.00%)
Ne1	11	lcl\|NC_018269.1_cdsid_YP_006560249.1	HHsearch (proba=100.00%)
Tc1	12	lcl\|NC_018269.1_cdsid_YP_006560250.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4339 protein:vir:100135 protein:vir:1886	D3 phi1026b HK022	34 % 33 % 31 %
Portal	protein:vir:94666	mu1/6	25 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:78831	ES18 phiHSIC 80alpha	55 % 49 % 26 %
Ad1	protein:vir:100103 protein:vir:97069 protein:vir:100245	phi1026b OP1 Bcep176	23 % 21 % 21 %
Hc1	protein:vir:81177 protein:vir:1890 protein:vir:193	Geobacillus virus E2 HK022 HK97	32 % 30 % 26 %
Ne1	protein:vir:5745 protein:vir:96486 protein:vir:9930	PY54 2972 315.6	24 % 24 % 24 %
Tc1	protein:vir:5979 protein:vir:105337 protein:vir:97421	SPP1 PH15 92	29 % 23 % 23 %