BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_018269.1_cdsid_YP_006560240.1 [gene=B621_gp02] [protein=phage terminase large subunit] [protein_id=YP_006560240.1] [location=580..1812] (410 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp... 438 e-125 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 384 e-108 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 118 1e-28 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 118 1e-28 gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18... 117 2e-28 gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: Ter... 108 8e-26 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 108 1e-25 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 107 2e-25 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 107 2e-25 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 107 2e-25 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 107 3e-25 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 107 4e-25 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 106 6e-25 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 100 2e-23 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 96 8e-22 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 94 3e-21 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 94 3e-21 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 88 1e-19 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 86 8e-19 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 78 2e-16 gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hyp... 78 2e-16 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 78 2e-16 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 75 1e-15 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 75 1e-15 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 75 2e-15 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 73 6e-15 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 73 8e-15 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 69 1e-13 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 68 2e-13 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 64 3e-12 gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: put... 54 4e-09 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 42 2e-05 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 41 3e-05 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 41 3e-05 gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 40 7e-05 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 36 0.001 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 34 0.003 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 34 0.003 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 34 0.003 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 33 0.005 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 32 0.011 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 32 0.014 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 31 0.021 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 27 0.36 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 24 2.6 gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hy... 24 2.7 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 24 2.8 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 24 2.8 gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: put... 24 3.3 gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: ter... 24 3.7 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 24 3.7 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 24 3.9 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 24 4.0 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 23 7.3 >gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp2 # Family: family:all:54 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224140;genbank:gi:62362215;genbank:GeneID :3342458 Length = 439 Score = 438 bits (1127), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/421 (54%), Positives = 286/421 (67%), Gaps = 29/421 (6%) Query: 6 IELPPKLIPVFSEPYRRIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWM 65 +++P KL+PVF+ R RGA+GGRGS KT +FALM+A++AY AAE+ GVILCARE+M Sbjct: 7 LQIPAKLVPVFATEGVRYRGAHGGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYM 66 Query: 66 NSLKDSSMAEVKGAIESVDWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARIL 125 NSL++SSM EVK AI SV WL +YFDIG++YIRTKN V Y+F GL NLDS+KSKARIL Sbjct: 67 NSLEESSMEEVKQAIRSVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARIL 126 Query: 126 IAWVDEAEGVSSMAWDKLEPTVRTEGSEIWVTWNPELDGSTTDLRFRKQLDELEGNSMIV 185 +AWVDEAE VSS AW KL PTVR EGSEIWVTWNPE DGS TD FRK + +SMIV Sbjct: 127 VAWVDEAESVSSTAWKKLRPTVREEGSEIWVTWNPEKDGSATDKLFRKNPPK---SSMIV 183 Query: 186 EMNYGDNPWFPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSFEPKD 245 EMNY DNPWFP VLE+ R+ LD YAWIWEGAY +NSD QV ANKY + SFE + Sbjct: 184 EMNYVDNPWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DN 242 Query: 246 HW---DGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQE---- 298 W + G DFGF++DP+ ++ +I + L IE EA G+ELDD F + Sbjct: 243 LWRKSERLLFGADFGFAKDPSTLIRMFILDNNLYIEYEAYGNGVELDDMWKFYAGKTDAT 302 Query: 299 -----------------IPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDG 341 IPE + ++AD +RPE++SH++ G +++ KW GSVEDG Sbjct: 303 PKQLKDWKVTDDTKFPGIPEARKWPIKADNSRPETISHIKGQGF-NISAAQKWQGSVEDG 361 Query: 342 IQFMRSFSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYALNPMI 401 I F+R F +I+IH RC E KE RLYSYK D+ +G+VL I DK+NH D IRY L+ I Sbjct: 362 ITFLRGFKKIIIHPRCKETAKEARLYSYKTDRITGEVLPIIEDKNNHCWDGIRYGLDGYI 421 Query: 402 K 402 K Sbjct: 422 K 422 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 384 bits (985), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/404 (49%), Positives = 274/404 (67%), Gaps = 14/404 (3%) Query: 1 MTVAQIELPPKLIPVFSEPYR--RIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVI 58 MT +IELPPK++ VF +P R RGAYG RGSGK+F+FA M+AI + +K I Sbjct: 1 MTTKKIELPPKILEVFEQPRGAVRFRGAYGSRGSGKSFNFAKMAAIWGAI-----EKMRI 55 Query: 59 LCAREWMNSLKDSSMAEVKGAIESVDWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSL 118 LC RE S+K+S AE+K AI+S +WL + +D+G +YIR N E++F GL + S+ Sbjct: 56 LCTRELQVSIKESFHAELKNAIKSDEWLSSIYDVGIDYIRNNNNGTEFLFKGLRHGMGSV 115 Query: 119 KSKARILIAWVDEAEGVSSMAWDKLEPTV-RTEGSEIWVTWNPELDGSTTDLRFRKQLDE 177 KS A+I + V+EAE V AW +L PT+ RT+ +E WV WNP GS D RFR+ + Sbjct: 116 KSTAQIDLTIVEEAEDVPENAWVELLPTIFRTDKAECWVIWNPRKKGSPVDKRFRQFKPD 175 Query: 178 LEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYR 237 ++++VEMNY DNP+FP+ LEDLR+ + T+ P YA +W GAY ++++AQVF N ++ Sbjct: 176 ---DAVVVEMNYYDNPFFPKGLEDLRRHDEDTMPPELYAHVWLGAYYEHTEAQVFKN-WK 231 Query: 238 IDSFEPKDHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQ 297 ++ + W+GPY+GLDFGFSQDPTA VKCW++G+ + IE+EAGKVGLE+D TA ++ + Sbjct: 232 VEQVN-TNGWEGPYYGLDFGFSQDPTAGVKCWLNGNDVYIEKEAGKVGLEIDHTADYLIK 290 Query: 298 EIPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERC 357 I I V AD ARPES+S L+R G+P++ KW GSVEDG++++RS I I C Sbjct: 291 RIDGIDDAKVYADSARPESISLLKRTGIPRIEGVPKWKGSVEDGVEWLRS-KRIFIDPEC 349 Query: 358 IEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYALNPMI 401 E KEF YSYK D+ +G++ +VD +NHYIDAIRY N MI Sbjct: 350 TETIKEFTYYSYKTDRYTGEIKNQLVDAYNHYIDAIRYCFNDMI 393 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 118 bits (296), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 14/226 (6%) Query: 14 PVFSEPY---RRIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKD 70 P+F EP+ R + A GGRGSGK+++ A R + A Q ILCARE NS+ D Sbjct: 6 PIF-EPFIEAHRYKVAKGGRGSGKSWAIA-----RLLVEAARRQPVRILCARELQNSISD 59 Query: 71 SSMAEVKGAIESVDWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIAWVD 130 S + ++ IE + F+I + IR N E++F G+ N +KS I I WV+ Sbjct: 60 SVIRLLEDTIEREGYSAE-FEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGIDICWVE 118 Query: 131 EAEGVSSMAWDKLEPTVRTEGSEIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEMNYG 190 EAE V+ +WD L PT+R SEIWV++NP+ + D +++ + + ++ +NY Sbjct: 119 EAEAVTKESWDILIPTIRKPFSEIWVSFNPK---NILDDTYQRFVVNPPDDICLLTVNYT 175 Query: 191 DNPWFPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKY 236 DNP FP+VL L + + +P Y IW G SD + ++ Sbjct: 176 DNPHFPEVLR-LEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREW 220 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 118 bits (296), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 14/226 (6%) Query: 14 PVFSEPY---RRIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKD 70 P+F EP+ R + A GGRGSGK+++ A R + A Q ILCARE NS+ D Sbjct: 6 PIF-EPFIEAHRYKVAKGGRGSGKSWAIA-----RLLVEAARRQPVRILCARELQNSISD 59 Query: 71 SSMAEVKGAIESVDWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIAWVD 130 S + ++ IE + F+I + IR N E++F G+ N +KS I I WV+ Sbjct: 60 SVIRLLEDTIEREGYSAE-FEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGIDICWVE 118 Query: 131 EAEGVSSMAWDKLEPTVRTEGSEIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEMNYG 190 EAE V+ +WD L PT+R SEIWV++NP+ + D +++ + + ++ +NY Sbjct: 119 EAEAVTKESWDILIPTIRKPFSEIWVSFNPK---NILDDTYQRFVVNPPDDICLLTVNYT 175 Query: 191 DNPWFPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKY 236 DNP FP+VL L + + +P Y IW G SD + ++ Sbjct: 176 DNPHFPEVLR-LEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREW 220 >gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18 # Family: family:all:54 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050979;genbank:gi:9633565;genbank:GeneID: 1262312 Length = 469 Score = 117 bits (293), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 15/196 (7%) Query: 21 RRIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAI 80 +RI+ +GGRG KT SFA ++ I A M K LC RE+MNS++DS A ++ + Sbjct: 5 KRIKVYFGGRGGMKTVSFAKIALITASM-----HKRRFLCLREFMNSIEDSGHAVLQAEV 59 Query: 81 ESVDWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIAWVDEAEGVSSMAW 140 E++ L+N F I YI N ++ + + L RN+ S+KSK +AWV+EAE VS + Sbjct: 60 ETLG-LQNRFRILNTYIEGINDSI-FKYGQLARNIASIKSKHDFDVAWVEEAETVSEKSL 117 Query: 141 DKLEPTVRTEGSEIWVTWNPELDGSTTDLRFRKQLDEL-------EGNSMIV-EMNYGDN 192 D L PT+R GSE+W ++NP + RF K EL E + + V +++Y DN Sbjct: 118 DSLIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVGKVSYLDN 177 Query: 193 PWFPQVLEDLRKRQQR 208 PW P L++ ++ +R Sbjct: 178 PWLPAELKNDAQKMKR 193 >gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: TerL-like protein # Family: family:all:54 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039811;genbank:gi:126011061;genbank:Ge neID:4818267 Length = 459 Score = 108 bits (271), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 12/222 (5%) Query: 22 RIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIE 81 R + YGGR S K+ A Y+A K LCAR++ N + +S +KG I+ Sbjct: 17 RYKALYGGRASSKSHDAA---GFAVYLARNYTVK--FLCARQFQNKISESVYTLIKGKID 71 Query: 82 SVDWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIAWVDEAEGVSSMAWD 141 + W K FD+ IR K E++F G+ RNL+ +KS + I W++EA+ ++ W+ Sbjct: 72 AAGWTKE-FDVTISSIRHKKTGAEFLFYGIARNLNEIKSTEGVDILWLEEAQYLTEEQWN 130 Query: 142 KLEPTVRTEGSEIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEMNYGDNPWFPQ-VLE 200 + PT+R EGS+IW+ WNP+ TD ++ + + + ++N+ +NP+ +L+ Sbjct: 131 VINPTIRREGSQIWLIWNPD---QYTDFIYQNFVVNPPADCLSKQINWTENPFLSDTMLK 187 Query: 201 DLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSFE 242 + QR DP ++ GA + D + +Y + + + Sbjct: 188 VIYDEYQR--DPKLAEHVYGGAPKMGGDKAIIQLQYVLAAID 227 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 108 bits (270), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 103/350 (29%), Positives = 170/350 (48%), Gaps = 22/350 (6%) Query: 58 ILCAREWMNSLKDSSMAEVKGAIESVD-WLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLD 116 IL R+ +++KDS +VK + + W ++ + NG V ++F GL+ N + Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAV-FLFKGLD-NPE 142 Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTE---GSEIWVTWNPELDGSTTDLRFRK 173 +KS I ++EA + + +L +R +I++ +NP + F + Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 174 QLDELEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPN---TYAWIWEGAYRQNSDAQ 230 + +E N MI + +Y DN + ++ RQ L N Y I+ D Sbjct: 203 HGEPME-NVMIRQSSYRDNKFLDEM-----TRQNLELLANRNPAYYKIYALGEFATLDKL 256 Query: 231 VFANKYRIDSFEPKDHWDGP-YHGLDFGFSQDPTAAVKCWID--GDRLMIEREAGKVGLE 287 VF KY + P Y GLDFG+ DP+A + ID +L I E K G+ Sbjct: 257 VFP-KYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGML 315 Query: 288 LDDTAIFIEQEIPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRS 347 D+ A I+Q +R + AD A +S++ LR GL ++ T K GSV G+QF+ Sbjct: 316 NDEIANVIKQ--LGYAREEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ 373 Query: 348 FSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 F EI++ ERC + +EF Y+++ DK++G+ VD +NH ID++RY++ Sbjct: 374 F-EIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 422 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 107 bits (268), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 174/353 (49%), Gaps = 28/353 (7%) Query: 58 ILCAREWMNSLKDSSMAEVKGAIESVD-WLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLD 116 IL R+ +++KDS +VKG + + W ++ + NG V ++F GL+ N + Sbjct: 85 ILWLRKVQSTIKDSLFEDVKGCLINFGIWDMCLWNKTDNKVELPNGAV-FLFKGLD-NPE 142 Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTE---GSEIWVTWNPELDGSTTDLRFRK 173 +KS I ++EA + + +L +R +I++ +NP + F + Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 174 QLDELEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPN---TYAWIWEGAYRQNSDAQ 230 + +E N MI + +Y DN + ++ RQ L N Y I+ D Sbjct: 203 HGEPME-NVMIRQSSYRDNKFLDEM-----TRQNLELLANRNPAYYKIYALGEFATLDKL 256 Query: 231 VFANKY--RIDSFEPKDHWDGPYHGLDFGFSQDPTAAVKCWIDGD--RLMIEREAGKVGL 286 VF KY RI S + H Y GLDFG+ DP+A + ID D +L + E K G+ Sbjct: 257 VFP-KYEKRIISDKEVGHLPS-YFGLDFGYVNDPSAFIHVKIDNDNKKLYVISEYVKKGM 314 Query: 287 ELDDTAIFIEQEIPEI--SRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQF 344 ++ A Q I ++ S+ + AD A +S+ ++ +G+ ++ K SV GIQF Sbjct: 315 LNNEIA----QVINDLGYSKEKITADSAEQKSIMEIKTNGIDRIVPAMKGKDSVMAGIQF 370 Query: 345 MRSFSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 + F +IVI ERC + +EF Y++K DKN+G+ VD +NH IDA+RYA+ Sbjct: 371 VSQF-DIVIDERCYKTIEEFDNYTWKKDKNTGEYYNEPVDTYNHCIDALRYAV 422 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 107 bits (267), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 22/350 (6%) Query: 58 ILCAREWMNSLKDSSMAEVKGAIESVD-WLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLD 116 IL R+ +++KDS +VK + + W ++ + NG V ++F GL+ N + Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAV-FLFKGLD-NPE 142 Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTE---GSEIWVTWNPELDGSTTDLRFRK 173 +KS I ++EA + + +L +R +I++ +NP + F + Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 174 QLDELEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPN---TYAWIWEGAYRQNSDAQ 230 + +E N MI + +Y DN + ++ RQ L N Y I+ D Sbjct: 203 HGEPME-NVMIRQSSYRDNKFLDEM-----TRQNLELLANRNPAYYKIYALGEFSTLDKL 256 Query: 231 VFANKYRIDSFEPKDHWDGP-YHGLDFGFSQDPTAAVKCWID--GDRLMIEREAGKVGLE 287 VF KY + P Y GLDFG+ DP+A + ID +L I E K G+ Sbjct: 257 VFP-KYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGML 315 Query: 288 LDDTAIFIEQEIPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRS 347 D+ A I+Q ++ + AD A +S++ LR GL ++ T K GSV G+QF+ Sbjct: 316 NDEIANVIKQ--LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ 373 Query: 348 FSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 F EI++ ERC + +EF Y+++ DK++G+ VD +NH ID++RY++ Sbjct: 374 F-EIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 422 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 107 bits (267), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 22/350 (6%) Query: 58 ILCAREWMNSLKDSSMAEVKGAIESVD-WLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLD 116 IL R+ +++KDS +VK + + W ++ + NG V ++F GL+ N + Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAV-FLFKGLD-NPE 142 Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTE---GSEIWVTWNPELDGSTTDLRFRK 173 +KS I ++EA + + +L +R +I++ +NP + F + Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 174 QLDELEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPN---TYAWIWEGAYRQNSDAQ 230 + +E N MI + +Y DN + ++ RQ L N Y I+ D Sbjct: 203 HGEPME-NVMIRQSSYRDNKFLDEM-----TRQNLELLANRNPAYYKIYALGEFSTLDKL 256 Query: 231 VFANKYRIDSFEPKDHWDGP-YHGLDFGFSQDPTAAVKCWID--GDRLMIEREAGKVGLE 287 VF KY + P Y GLDFG+ DP+A + ID +L I E K G+ Sbjct: 257 VFP-KYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGML 315 Query: 288 LDDTAIFIEQEIPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRS 347 D+ A I+Q ++ + AD A +S++ LR GL ++ T K GSV G+QF+ Sbjct: 316 NDEIANVIKQ--LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ 373 Query: 348 FSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 F EI++ ERC + +EF Y+++ DK++G+ VD +NH ID++RY++ Sbjct: 374 F-EIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 422 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 107 bits (266), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 22/350 (6%) Query: 58 ILCAREWMNSLKDSSMAEVKGAIESVD-WLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLD 116 IL R+ +++KDS +VK + + W ++ + NG V ++F GL+ N + Sbjct: 63 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAV-FLFKGLD-NPE 120 Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTE---GSEIWVTWNPELDGSTTDLRFRK 173 +KS I ++EA + + +L +R +I++ +NP + F + Sbjct: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 180 Query: 174 QLDELEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPN---TYAWIWEGAYRQNSDAQ 230 + +E N MI + +Y DN + ++ RQ L N Y I+ D Sbjct: 181 HGEPME-NVMIRQSSYRDNKFLDEM-----TRQNLELLANRNPAYYKIYALGEFATLDKL 234 Query: 231 VFANKYRIDSFEPKDHWDGP-YHGLDFGFSQDPTAAVKCWID--GDRLMIEREAGKVGLE 287 VF KY + P Y GLDFG+ DP+A + ID +L I E K G+ Sbjct: 235 VFP-KYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGML 293 Query: 288 LDDTAIFIEQEIPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRS 347 D+ A I+Q ++ + AD A +S++ LR GL ++ T K GSV G+QF+ Sbjct: 294 NDEIANVIKQ--LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ 351 Query: 348 FSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 F EI++ ERC + +EF Y+++ DK++G+ VD +NH ID++RY++ Sbjct: 352 F-EIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 400 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 107 bits (266), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 22/350 (6%) Query: 58 ILCAREWMNSLKDSSMAEVKGAIESVD-WLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLD 116 IL R+ +++KDS +VK + + W ++ + NG V ++F GL+ N + Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAV-FLFKGLD-NPE 142 Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTE---GSEIWVTWNPELDGSTTDLRFRK 173 +KS I ++EA + + +L +R +I++ +NP + F + Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 174 QLDELEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPN---TYAWIWEGAYRQNSDAQ 230 + +E N MI + +Y DN + ++ RQ L N Y I+ D Sbjct: 203 HGEPME-NVMIRQSSYRDNKFLDEM-----TRQNLELLANRNPAYYKIYALGEFATLDKL 256 Query: 231 VFANKYRIDSFEPKDHWDGP-YHGLDFGFSQDPTAAVKCWID--GDRLMIEREAGKVGLE 287 VF KY + P Y GLDFG+ DP+A + ID +L I E K G+ Sbjct: 257 VFP-KYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGML 315 Query: 288 LDDTAIFIEQEIPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRS 347 D+ A I+Q ++ + AD A +S++ LR GL ++ T K GSV G+QF+ Sbjct: 316 NDEIANVIKQ--LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ 373 Query: 348 FSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 F EI++ ERC + +EF Y+++ DK++G+ VD +NH ID++RY++ Sbjct: 374 F-EIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 422 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 106 bits (264), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 22/350 (6%) Query: 58 ILCAREWMNSLKDSSMAEVKGAIESVD-WLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLD 116 IL R+ +++KDS +VK + + W ++ + NG V ++F GL+ N + Sbjct: 63 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVGLPNGAV-FLFKGLD-NPE 120 Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTE---GSEIWVTWNPELDGSTTDLRFRK 173 +KS I ++EA + + +L +R +I++ +NP + F + Sbjct: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLIFNPVSKLNWVYKYFFE 180 Query: 174 QLDELEGNSMIVEMNYGDNPWFPQVLEDLRKRQQRTLDPN---TYAWIWEGAYRQNSDAQ 230 + +E N MI + +Y DN + ++ RQ L N Y I+ D Sbjct: 181 HGEPME-NVMIRQSSYRDNKFLDEM-----TRQNLELLANRNPAYYKIYALGEFATLDKL 234 Query: 231 VFANKYRIDSFEPKDHWDGP-YHGLDFGFSQDPTAAVKCWID--GDRLMIEREAGKVGLE 287 VF KY + P Y GLDFG+ DP+A + ID +L I E K G+ Sbjct: 235 VFP-KYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGML 293 Query: 288 LDDTAIFIEQEIPEISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRS 347 D+ A I+Q ++ + AD A +S++ LR GL ++ T K GSV G+QF+ Sbjct: 294 NDEIANVIKQ--LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ 351 Query: 348 FSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 F EI++ ERC + +EF Y+++ DK++G+ VD +NH ID++RY++ Sbjct: 352 F-EIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 400 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 100 bits (250), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 178/387 (45%), Gaps = 29/387 (7%) Query: 27 YGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDWL 86 YGG SGK+ ++A + + IL R+ +++DS A++ + L Sbjct: 39 YGGASSGKSHGVFQKIILKA-LNPKFKHPRKILVLRKVGATVRDSVFADIMSNLSYFGIL 97 Query: 87 -KNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIAWVDEAEGVSSMAWDKLEP 145 K ++ I NG E+IF G++ N + +KS I ++EA + + +L Sbjct: 98 DKCKINMSAFRITLPNG-AEFIFKGMD-NPEKIKSIKGISDVVMEEASEFTLDDYTQLTL 155 Query: 146 TVRTEG---SEIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEMNYGDNPWFPQV---- 198 +R + +I++ +NP S + ++ + N+++ + Y DN + V Sbjct: 156 RLRDKKHLEKQIYLMFNP---VSKVNWVYKAFFVKTPKNTVVYQTTYKDNRFLDDVTREN 212 Query: 199 LEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKY--RIDSFEPKDHWDGPYHGLDF 256 +E+L R + Y I+ D +F KY +I + + H + GLD+ Sbjct: 213 IEELANRNE------AYYKIYALGQFATLDKLIFP-KYDKQILNKDKLSHLPS-FFGLDY 264 Query: 257 GFSQDPTAAVKCWID--GDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRADCARP 314 GF DP+A + ID +L I E + L D A I+ ++ +R D A Sbjct: 265 GFINDPSALLHVKIDDANKKLYILEEYVRKNLTNDKIANAIKD--LGYAKEEIRGDSAEK 322 Query: 315 ESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSYKVDKN 374 +S LR G+P++ +K G+V GIQ++ + IV ERC++ +E Y++K DK Sbjct: 323 KSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWIV-DERCVKTIEELENYTWKKDKK 381 Query: 375 SGDVLTTIVDKHNHYIDAIRYALNPMI 401 + + VD +NH IDAIRYA+ I Sbjct: 382 TNEYTNEPVDSYNHCIDAIRYAVQDRI 408 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 95.9 bits (237), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 117/395 (29%), Positives = 179/395 (45%), Gaps = 38/395 (9%) Query: 24 RGAYGGRGSGKTFSFAL--MSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIE 81 R GGRGS K+ + AL + AI Y A +L R + N+ K S+ ++K A Sbjct: 30 RVVKGGRGSKKSKTTALYYIVAILKYNWAN------LLVVRRFSNTNKQSTYTDLKWAAN 83 Query: 82 SVDWLKNYFDIGQEY--IRTKNGNVEYIFTGLNRNLD--SLKSKARILI-AWVDEAEGVS 136 ++ + + F + I K + +F GL+ L S+ +L W++EA V Sbjct: 84 RLN-VSHLFKFNESLPEITVKATGQKILFRGLDDPLKITSITVDTGLLSWLWLEEAYQVE 142 Query: 137 SMAWDKLEPTVRT-EGS--------EIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEM 187 + DK E V + GS +I VT+NP + F + D + + Sbjct: 143 NQ--DKFETLVESIRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDE-DTRKKDVFADTT 199 Query: 188 NYGDNPWFPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSFE---PK 244 Y N W Q D + RT +P A + G + ++ VF N Y + F+ Sbjct: 200 TYRVNEWLDQQDIDRYEDLWRT-NPRRAAVVANGDWGV-AEGLVFEN-YEVKDFDIVSTI 256 Query: 245 DHWDGPYHGLDFGFSQDPTAAVKCWIDGDR--LMIEREAGKVGLELDDTAIFIEQEIPEI 302 GLDFGF+ DPT + +D ++ L I E + + DD IF ++ Sbjct: 257 KRIGETTAGLDFGFTHDPTTFPRLAVDLEKKELWIYAEHYEHAMTTDD--IFKMIVDADM 314 Query: 303 SRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQK 362 V+ AD A ++ L+ G+ ++ + K GS+ GI FM+ F +I IH CI+ + Sbjct: 315 QNAVITADSAEQRLIAELQAKGIRRLVPSIKGKGSINAGIDFMKQF-KIYIHPSCIKTIE 373 Query: 363 EFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 EF Y YK DK+ G L +D +NH IDAIRYAL Sbjct: 374 EFDTYIYKQDKD-GKWLNEPIDSNNHIIDAIRYAL 407 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 114/404 (28%), Positives = 177/404 (43%), Gaps = 49/404 (12%) Query: 20 YRRIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGA 79 YR ++G+ G + S KT + L+ I Y A IL R + N+ K S+ ++K A Sbjct: 25 YRVVKGSRGSKKS-KTTAINLIYRIMKYDWAN------ILVVRRFSNTNKQSTYTDLKWA 77 Query: 80 IESVDWLKNYFDIGQEY--IRTKNGNVEYIFTGLNRNLD--SLKSKARILI-AWVDEAEG 134 + + + F + I K + +F GL+ L S+ IL AW +EA Sbjct: 78 TNQLG-VAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQ 136 Query: 135 VSSMAWDKLEPTVRT-EGS--------EIWVTWNPELDGSTTDLRFRKQLDELEGNSMIV 185 + + A K V + GS +I VT+NP + F + +L N+ Sbjct: 137 IETFA--KFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETKL-NNTFSD 193 Query: 186 EMNYGDNPWFPQV----LEDL---RKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRI 238 Y N W +V EDL R+ R + + + EG N + F Sbjct: 194 TTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWG-VAEGLVFDNFKVEDF------ 246 Query: 239 DSFEPKDHWDGPYHGLDFGFSQDPTAAVKCWID--GDRLMIEREAGKVGLELDDTA-IFI 295 D FE HG+DFGFSQDPT V +D +L I E K + DD + I Sbjct: 247 DWFEEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKLFIYDEHYKKAMLTDDIKQMLI 306 Query: 296 EQEIPEISRHVVRAD--CARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVI 353 ++ + ++ + AD +S L+ G+ + K A ++ GIQF++ F E++I Sbjct: 307 KKGLGDVD---IAADYGAGGDRVISELKSKGIKGIRKALKGANTILPGIQFIQGF-EVII 362 Query: 354 HERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 H C +EF Y++ D N G L +D +NH IDA+RY+L Sbjct: 363 HPSCEHAIEEFNTYTFDQD-NDGKWLNKPIDANNHIIDALRYSL 405 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:Ge neID:5237186 Length = 460 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 15/230 (6%) Query: 11 KLIPVFSEPYR---RIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNS 67 KL P +R R + YGGR S K+ I Y+AA K LCAR++ N Sbjct: 3 KLNPALRAVWRTRARYKVIYGGRASSKSHD---AGGIAVYLAANYRLK--FLCARQFQNR 57 Query: 68 LKDSSMAEVKGAIESVDWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIA 127 + +S +K IE+ ++ F + I+ K E++F G+ RNL +KS I I Sbjct: 58 ISESVYTLIKDKIENSEY-NGEFIFTKNSIKHKRTGSEFLFYGIARNLSEIKSTEGIDIL 116 Query: 128 WVDEAEGVSSMAWDKLEPTVRTEGSEIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEM 187 W++EA ++ W+ +EPT+R E SEIW+ +NP TD ++ + + ++ + + Sbjct: 117 WLEEAHYLTQEQWEVIEPTIRKENSEIWIIFNP---NEVTDFVYQNFVVKPPKDAFVKMI 173 Query: 188 NYGDNPWFPQ-VLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKY 236 N+ +NP+ + +L+ + + +R D + I+ G + D V K+ Sbjct: 174 NWNENPFLSETMLKVIHEAYER--DKDQAEHIYGGIPKTGGDKSVINLKF 221 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 88.2 bits (217), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 94/381 (24%), Positives = 178/381 (46%), Gaps = 20/381 (5%) Query: 27 YGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDWL 86 YGG SGK+ +++ +K +L R+ ++K+S +V + + L Sbjct: 34 YGGASSGKSHGVVQKVVLKSLQHWNVPRK--VLWLRKVDRTVKNSIFTDVTECLSGWNIL 91 Query: 87 K-NYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIAWVDEAEGVSSMAWDKLEP 145 + + + + I NG + ++F G++ + + +KS + ++EA + + +L Sbjct: 92 QYCHVNRSDKTIVLPNGAI-FLFQGMD-DPEKIKSIKGLSDVVMEEASEFNHNDYTQLTL 149 Query: 146 TVRT---EGSEIWVTWNPELDGS-TTDLRFRKQLDELEGNSMIVEMNYGDNPWFPQVLED 201 +R + +I+ +NP + T F D I + Y DN + + ++ Sbjct: 150 RLREPKHKQRQIFCMFNPVSKLNWTYQTWFDPSADYDRSRVAIHQSTYKDNRFLDE--DN 207 Query: 202 LRKRQQ-RTLDPNTYAWIWEGAYRQNSDAQVFA--NKYRIDSFEPKDHWDGPYHGLDFGF 258 +R ++ + +P Y G + D VF R++ +PK Y GLD+GF Sbjct: 208 IRTIEELKNTNPAYYKIYTLGEF-ATLDKLVFPYFETKRLNPRDPKLLALNDYFGLDYGF 266 Query: 259 SQDPTAAVKCWID--GDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRADCARPES 316 DP+A + +D L + E K GL + A I+ S+ V+ AD A +S Sbjct: 267 INDPSAFMHIKLDMRNKTLYVMDEFVKKGLLNNQLAQVIKDM--GYSKEVITADSAEKKS 324 Query: 317 VSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSYKVDKNSG 376 ++ ++R G+ ++ K S+ GIQF++ F + V+ +RC++ +E + Y+Y DK + Sbjct: 325 IAEMKRDGIYRIRPALKGPDSIIQGIQFLQQF-KWVVDDRCVKTIEELQNYTYVKDKKTD 383 Query: 377 DVLTTIVDKHNHYIDAIRYAL 397 + +D +NH IDAIRYA+ Sbjct: 384 EYTNRPIDAYNHCIDAIRYAV 404 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 85.9 bits (211), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 103/391 (26%), Positives = 167/391 (42%), Gaps = 39/391 (9%) Query: 28 GGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDWLK 87 G RGSGK+++ A I M L R++ + KDS+ A ++ S+ L Sbjct: 42 GSRGSGKSYATAAKVIIDIMMYPYVNW----LVTRQYATTQKDSTFATIRKVAHSMGVLD 97 Query: 88 NY-FDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKA------RILIAWVDEAEGVSSM-A 139 + F I K + F G++ D LK + I W +EA + S+ A Sbjct: 98 LFKFTKSPLEITYKQTGQKVFFRGMD---DPLKITSIQPVTGFICRRWCEEAYELKSLDA 154 Query: 140 WDKLEPTVRTEGS-----EIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEMNYGDNPW 194 +D +E ++R E + +T+NP D F + +S + Y DN Sbjct: 155 FDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTK-RNHSRAITTTYKDNDH 213 Query: 195 F-PQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSFEPKDHWDGPYH- 252 ++ L++ R + A + E ++ VF + F + + P Sbjct: 214 LNADYVDSLKEMLVRNPNRARVAVLGEWGI---AEGLVFDGLFEQRDFSYDEIANLPKSV 270 Query: 253 GLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQEIPEISRH-----VV 307 GLDFGF DPTA +D D ++ + E + Q E+++H + Sbjct: 271 GLDFGFKHDPTAGEFIAVDQDNRIV-----YIYDEFYKQHLLTNQIAQELAKHKAFGLPI 325 Query: 308 RADCARPESVSHL-RRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRL 366 AD A + L ++H +P + + K SV GIQ+M+S+ V+H R + +EF Sbjct: 326 TADSAEQRMIVELSQQHRVPNIKPSGKGKDSVIQGIQYMQSY-RFVVHPRVKGLMEEFNT 384 Query: 367 YSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 Y Y +DK G+ L D +NH IDA+RYAL Sbjct: 385 YVYDMDK-EGNWLNKPKDANNHAIDALRYAL 414 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 78.2 bits (191), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 105/401 (26%), Positives = 172/401 (42%), Gaps = 53/401 (13%) Query: 26 AYGGRGSGKTFSFALMSA---IRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIES 82 A GGRGSGK+ +++ +R M A + R+ N+L S ++K AIE Sbjct: 32 AKGGRGSGKSSDISIIITQLIMRYPMNA--------VVVRKTDNTLATSVFEQIKWAIEE 83 Query: 83 VDWLKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVS 136 + + F + E GN IF G L SLK S+ I W++E Sbjct: 84 QK-VSHLFKVKVSPMEITYVPRGN-RIIFRGAQNPERLKSLKDSRFPFSIMWIEE----- 136 Query: 137 SMAWDKLEPTVRTEGSEI-------------WVTWNP-ELDGSTTDLRFRKQLDELEGNS 182 +A K E V T + + + ++NP + S + ++ N+ Sbjct: 137 -LAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQP--DNT 193 Query: 183 MIVEMNYGDNPWFP-QVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF 241 + Y DNP+ Q +++ ++R N + WE V N +I+ Sbjct: 194 FVHHSTYLDNPFISKQFIQEAESAKER----NEQRYRWEYMGEAIGSGVVPFNNLQIEKI 249 Query: 242 EPKDHW---DGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQE 298 P D + D + +DFG++ DP A V+ D + +I G+++ + + Sbjct: 250 -PDDLYKTFDNIRNAVDFGYATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLK 308 Query: 299 IPEISRHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ER 356 + AD A P+S++ L++ HG+ ++ K SVE G Q++ + IVI R Sbjct: 309 RRGYQSDEIYADSAEPKSIAELKQEHGIKRIKGVKKGPDSVEHGEQWLDDLTAIVIDPNR 368 Query: 357 CIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 I +EF Y+ DK+ G+V + DK NH IDA RYAL Sbjct: 369 TPNIAREFENIDYETDKD-GNVKPRLEDKDNHTIDATRYAL 408 >gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690654;genbank:geneid:6329138;genbank:gi: 22855048;goa:P54308;interpro:IPR006437;interpro:IPR00670 1;interpro:IPR011441;uniprot:P54308;genbank:GeneID:95525 4 Length = 422 Score = 77.8 bits (190), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 115/435 (26%), Positives = 187/435 (42%), Gaps = 54/435 (12%) Query: 3 VAQIELPPKLIPVFSEPYRRIRGAY-------GGRGSGKTFSFALMSAIRAYMAAESGQK 55 + ++ L K P F E +R ++ A GGRGS K+ A+ + M + Sbjct: 1 MKKVRLSEKFTPHFLEVWRTVKAAQHLKYVLKGGRGSAKSTHIAMWIILLMMMMPIT--- 57 Query: 56 GVILCAREWMNSLKDSSMAEVKGAIESVD----WLKNYFDIGQEYIRTKNGNVEYIFTGL 111 L R N+++ S ++K AI+ ++ W + + YI N IF G Sbjct: 58 --FLVIRRVYNTVEQSVFEQLKEAIDMLEVGHLWKVSKSPLRLTYIPRGNS---IIFRGG 112 Query: 112 N--RNLDSLK-SKARILIAWVDE------AEGVS----SMAWDKLEPTVRTEGSEIWVTW 158 + + + S+K SK + W++E E VS S+ +L P R + ++ Sbjct: 113 DDVQKIKSIKASKFPVAGMWIEELAEFKTEEEVSVIEKSVLRAELPPGCRYI---FFYSY 169 Query: 159 NP-ELDGSTTDLRFRKQLDELEGNSMIVEMNYGDNPWFPQV-LEDLRKRQQRTLDPNTYA 216 NP + S + F L N+ + Y NP+ + +E+ + ++R + Sbjct: 170 NPPKRKQSWVNKVFNSSF--LPANTFVDHSTYLQNPFLSKAFIEEAEEVKRRNELKYRHE 227 Query: 217 WIWEGAYRQNSDAQVFANKYRIDSFEPKD----HWDGPYHGLDFGFSQDPTAAVKCWIDG 272 ++ E S F N +I+ D +D GLDFG+ DP A V+ D Sbjct: 228 YLGEAL---GSGVVPFEN-LQIEEGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDK 283 Query: 273 --DRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRADCARPESVSHLR-RHGLPQVT 329 +R+ E + L TA F+ + E +R + AD + P S+ L+ HG+ ++ Sbjct: 284 RKNRIYAIDELVDHKVSLKRTADFVRKNKYESARII--ADSSEPRSIDALKLEHGINRIE 341 Query: 330 STSKWAGSVEDGIQFMRSFSEIVIHE-RCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNH 388 K SVE G +++ IVI R I +EF Y+ DKN GD + + DK NH Sbjct: 342 GAKKGPDSVEHGERWLDELDAIVIDPLRTPNIAREFENIDYQTDKN-GDPIPRLEDKDNH 400 Query: 389 YIDAIRYALNPMIKK 403 IDA RYA +KK Sbjct: 401 TIDATRYAFERDMKK 415 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 77.8 bits (190), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 102/396 (25%), Positives = 169/396 (42%), Gaps = 43/396 (10%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A GGRGSGK+ A++ + + L R+ N+L S ++K AI +V Sbjct: 30 AKGGRGSGKSSDIAIIIVLLIMRYPVNA-----LILRKIDNTLALSVFEQIKWAI-NVMG 83 Query: 86 LKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVSSMA 139 + + F I E GN + +F G + SLK ++ IAW++E +A Sbjct: 84 VSHLFKIKVSPMEITYVPRGN-KMVFRGAQNPERIKSLKDAQFPYAIAWIEE------LA 136 Query: 140 WDKLEPTVRTEGSEI-------------WVTWNP-ELDGSTTDLRFRKQLDELEGNSMIV 185 K E V T + + + T+NP + S + ++ N+ + Sbjct: 137 EFKTEDEVTTITNSLLRGELDNGLFYKFFYTYNPPKRKQSWVNKKYESSFQP--DNTFVH 194 Query: 186 EMNYGDNPWFPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF--EP 243 Y +NP+ + + K + N + WE V N RI++ E Sbjct: 195 HSTYLNNPFIAKEFIEEAKAAKAI---NELRYRWEYLGEAIGSGVVPFNNLRIETIPKEQ 251 Query: 244 KDHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQEIPEIS 303 D +D + +DFG++ DP A V+ D + +I G+++ + + Sbjct: 252 FDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKKKGYQ 311 Query: 304 RHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ERCIEIQ 361 + AD A P+S++ L++ H + ++ K SVE G Q++ IVI R I Sbjct: 312 SDEIYADSAEPKSIAELKQEHSIRRIKGVKKGPDSVEHGEQWLNDLDAIVIDPTRTPNIA 371 Query: 362 KEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 +EF Y+ DK+ G+V + DK NH IDA RYAL Sbjct: 372 REFENIDYQTDKD-GNVKPRLEDKDNHTIDATRYAL 406 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 111/400 (27%), Positives = 173/400 (43%), Gaps = 51/400 (12%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A GGRGSGK+ + +S I + V++ R+ N+L S ++K AIE Sbjct: 32 AKGGRGSGKS---SDISIIITQLIMRYPMNAVVI--RKTDNTLATSVFEQIKWAIEEQK- 85 Query: 86 LKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVSSMA 139 + + F + E GN IF G L SLK S+ IAW++E +A Sbjct: 86 VSHLFKVKVSPMEITYIPRGN-RIIFRGAQNPERLKSLKDSRFPFSIAWIEE------LA 138 Query: 140 WDKLEPTVRT-----------EG--SEIWVTWNP-ELDGSTTDLRFRKQLDELEGNSMIV 185 K E V T EG + + ++NP + S + ++ N+ + Sbjct: 139 EFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQA--DNTYVH 196 Query: 186 EMNYGDNPW----FPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF 241 Y +NP+ F Q E +KR N + WE V N RI+ Sbjct: 197 HSTYLNNPFISKQFIQEAESAKKR-------NEQRYRWEYMGEAIGSGVVPFNNLRIEEI 249 Query: 242 EPK--DHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQEI 299 + D +D + +DFG++ DP A V+ D + +I G+++ + + Sbjct: 250 PQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKK 309 Query: 300 PEISRHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ERC 357 + AD A P+S++ L++ HG+ ++ K A SVE G Q++ IVI R Sbjct: 310 KGYQSDEIFADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRT 369 Query: 358 IEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 I +EF Y+ DK+ G+V + DK NH IDA RYAL Sbjct: 370 PNIAREFENIDYETDKD-GNVKPKLEDKDNHTIDATRYAL 408 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 111/400 (27%), Positives = 173/400 (43%), Gaps = 51/400 (12%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A GGRGSGK+ + +S I + V++ R+ N+L S ++K AIE Sbjct: 32 AKGGRGSGKS---SDISIIITQLIMRYPMNAVVI--RKTDNTLATSVFEQIKWAIEEQK- 85 Query: 86 LKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVSSMA 139 + + F + E GN IF G L SLK S+ IAW++E +A Sbjct: 86 VSHLFKVKVSPMEITYIPRGN-RIIFRGAQNPERLKSLKDSRFPFSIAWIEE------LA 138 Query: 140 WDKLEPTVRT-----------EG--SEIWVTWNP-ELDGSTTDLRFRKQLDELEGNSMIV 185 K E V T EG + + ++NP + S + ++ N+ + Sbjct: 139 EFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQA--DNTYVH 196 Query: 186 EMNYGDNPW----FPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF 241 Y +NP+ F Q E +KR N + WE V N RI+ Sbjct: 197 HSTYLNNPFISKQFIQEAESAKKR-------NEQRYRWEYMGEAIGSGVVPFNNLRIEEI 249 Query: 242 EPK--DHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQEI 299 + D +D + +DFG++ DP A V+ D + +I G+++ + + Sbjct: 250 PQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKK 309 Query: 300 PEISRHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ERC 357 + AD A P+S++ L++ HG+ ++ K A SVE G Q++ IVI R Sbjct: 310 KGYQSDEIFADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRT 369 Query: 358 IEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 I +EF Y+ DK+ G+V + DK NH IDA RYAL Sbjct: 370 PNIAREFENIDYETDKD-GNVKPKLEDKDNHTIDATRYAL 408 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 74.7 bits (182), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 111/400 (27%), Positives = 173/400 (43%), Gaps = 51/400 (12%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A GGRGSGK+ + +S I + V++ R+ N+L S ++K AIE Sbjct: 32 AKGGRGSGKS---SDISIIITQLIMRYPMNAVVI--RKTDNTLATSVFEQIKWAIEEQK- 85 Query: 86 LKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVSSMA 139 + + F + E GN IF G L SLK S+ I+W++E +A Sbjct: 86 VSHLFKVKVSPMEITYIPRGN-RIIFRGAQNPERLKSLKDSRFPFSISWIEE------LA 138 Query: 140 WDKLEPTVRT-----------EG--SEIWVTWNP-ELDGSTTDLRFRKQLDELEGNSMIV 185 K E V T EG + + ++NP + S + ++ N+ + Sbjct: 139 EFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQA--DNTYVH 196 Query: 186 EMNYGDNPW----FPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF 241 Y +NP+ F Q E +KR N + WE V N RI+ Sbjct: 197 HSTYLNNPFISKQFIQEAESAKKR-------NEQRYRWEYMGEAIGSGVVPFNNLRIEEI 249 Query: 242 EPK--DHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQEI 299 + D +D + +DFG++ DP A V+ D + +I G+++ + + Sbjct: 250 PQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKK 309 Query: 300 PEISRHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ERC 357 V AD A P+S++ L++ HG+ ++ K A SVE G Q++ IVI R Sbjct: 310 KGYQSDEVFADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRT 369 Query: 358 IEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 I +EF Y+ DK+ G+V + DK NH IDA RYAL Sbjct: 370 PNIAREFENIDYETDKD-GNVKPKLEDKDNHTIDATRYAL 408 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 73.2 bits (178), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 113/401 (28%), Positives = 175/401 (43%), Gaps = 53/401 (13%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A GGRGSGK+ + +S I + V++ R+ N+L S ++K AIE Sbjct: 32 AKGGRGSGKS---SDISIIITQLIMRYPMNAVVI--RKTDNTLATSVFEQIKWAIEEQK- 85 Query: 86 LKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVSSMA 139 + + F + E GN IF G L SLK S+ IAW++E +A Sbjct: 86 VTHLFKVKVSPMEITYIPRGN-RIIFRGAQNPERLKSLKDSRFPFSIAWIEE------LA 138 Query: 140 WDKLEPTVRT-----------EG--SEIWVTWNP-ELDGSTTDLRFRKQLDELEGNSMIV 185 K E V T EG + + ++NP + S + ++ N+ + Sbjct: 139 EFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQA--DNTFVH 196 Query: 186 EMNYGDNPW----FPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF 241 Y +NP+ F Q E +KR N + WE V N RI+ Sbjct: 197 HSTYLNNPFISKQFIQEAESAKKR-------NEQRYRWEYMGEAIGSGVVPFNNLRIEEI 249 Query: 242 EPK---DHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQE 298 P+ D +D + +DFG++ DP A V+ D + +I G+++ + + Sbjct: 250 -PQGQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLK 308 Query: 299 IPEISRHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ER 356 + AD A P+S++ L++ HG+ +V + K A SVE G Q++ IVI R Sbjct: 309 KKGYQSDEIFADSAEPKSIAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRR 368 Query: 357 CIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 I +EF Y+ DK+ G+V + DK NH IDA RYAL Sbjct: 369 TPNIAREFENIDYQTDKD-GNVKPKLEDKDNHAIDATRYAL 408 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 72.8 bits (177), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 112/401 (27%), Positives = 175/401 (43%), Gaps = 53/401 (13%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A GGRGSGK+ + +S I + V++ R+ N+L S ++K AIE Sbjct: 32 AKGGRGSGKS---SDISIIITQLIMRYPMNAVVI--RKTDNTLATSVFEQIKWAIEEQK- 85 Query: 86 LKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVSSMA 139 + + F + E GN IF G L SLK S+ +AW++E +A Sbjct: 86 VSHLFKVKVSPMEITYIPRGN-RIIFRGAQNPERLKSLKDSRFPFSVAWIEE------LA 138 Query: 140 WDKLEPTVRT-----------EG--SEIWVTWNP-ELDGSTTDLRFRKQLDELEGNSMIV 185 K E V T EG + + ++NP + S + ++ N+ + Sbjct: 139 EFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQA--DNTFVH 196 Query: 186 EMNYGDNPW----FPQVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF 241 Y +NP+ F Q E +KR N + WE V N RI+ Sbjct: 197 HSTYLNNPFISKQFIQEAESAKKR-------NEQRYRWEYMGEAIGSGVVPFNNLRIEEI 249 Query: 242 EPK---DHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQE 298 P+ D +D + +DFG++ DP A V+ D + +I G+++ + + Sbjct: 250 -PQGQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLK 308 Query: 299 IPEISRHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ER 356 + AD A P+S++ L++ HG+ +V + K A SVE G Q++ IVI R Sbjct: 309 KKGYQSDEIFADSAEPKSIAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRR 368 Query: 357 CIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 I +EF Y+ DK+ G+V + DK NH IDA RYAL Sbjct: 369 TPNIAREFENIDYQTDKD-GNVKPKLEDKDNHAIDATRYAL 408 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 68.9 bits (167), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 10/222 (4%) Query: 181 NSMIVEMNYGDNPWFP-QVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRID 239 N+ + Y DNP+ Q +++ ++R N + WE V N +I+ Sbjct: 192 NTFVHHSTYLDNPFIAKQFIDEAEAAKER----NELRYRWEYLGEAIGSGVVPFNNLQIE 247 Query: 240 SF--EPKDHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQ 297 E +D + +DFG++ DP A V+ D + +I G+++ + Sbjct: 248 KIPDELFRSFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAVDEYYGVQISNRQFGKWL 307 Query: 298 EIPEISRHVVRADCARPESVSHLRR-HGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIH-E 355 + AD A P+S+ LR+ HG+ ++ K SVE G Q++ IVI Sbjct: 308 WSKGYQSDDIYADSAEPKSIDELRKEHGIKRIKGVKKGPDSVEYGEQWLNDLDAIVIDPN 367 Query: 356 RCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 R I +EF ++ DK+ G+V + DK NH IDA RYAL Sbjct: 368 RTPNIAREFENIDFETDKD-GNVKPKLEDKDNHTIDATRYAL 408 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 68.2 bits (165), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 8/207 (3%) Query: 205 RQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSFEPKDHWDG--PYHGLDFGFSQDP 262 R R +PN Y W + G N+ +VF N + D DG PY G D G++ DP Sbjct: 239 RLVRDKNPNRYEWEFLGR-NVNTGNEVFPNA--VQEHITFDMIDGLRPYEGFDEGYTADP 295 Query: 263 TAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIE-QEIPEISRHVVRADCARPESVSHLR 321 + ++ + D R + V A+ + + E S ++VR D A P + +R Sbjct: 296 SVWLRVFYDEQRDTVYITDELVMKRYKTKALAKDILNVQEGSYNIVRGDSANPRVLDEMR 355 Query: 322 RHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTT 381 G+ + SK SV G ++ + +IVI +C +EF Y+ D G+ Sbjct: 356 DLGV-NALAVSKSPNSVPHGTNWLANRIKIVIDFKCPNTWREFSSYALLPD-GVGNRKHG 413 Query: 382 IVDKHNHYIDAIRYALNPMIKKEEFIF 408 DK NH ID RYAL +I ++I Sbjct: 414 FPDKDNHTIDTTRYALEEVIANYDWIL 440 Score = 23.5 bits (49), Expect = 4.2, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 8/36 (22%) Query: 14 PVFSEPYRRIRG--------AYGGRGSGKTFSFALM 41 P F Y+R+ GGRGSGK+ ALM Sbjct: 28 PAFHNIYQRVLDNTAPSHVWMKGGRGSGKSSFVALM 63 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 63.9 bits (154), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 104/426 (24%), Positives = 171/426 (40%), Gaps = 77/426 (18%) Query: 26 AYGGRGSGKTFSFALMSA---IRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIES 82 A GGRGSGK+ +++ +R M A + R+ N+L S ++K AIE Sbjct: 31 AKGGRGSGKSSDISIIITQLIMRYPMNA--------VVVRKADNTLATSVFEQIKWAIEE 82 Query: 83 VDWLKNYFDIG---QEYIRTKNGNVEYIFTGLNR--NLDSLK-SKARILIAWVDEAEGVS 136 + + F + E GN IF G L SLK S+ I W++E Sbjct: 83 QK-VSHLFKVKVSPMEITYVPRGN-RIIFRGAQNPERLKSLKDSRFPFSIMWIEE----- 135 Query: 137 SMAWDKLEPTVRTEGSEI-------------WVTWNP-ELDGSTTDLRFRKQLDELEGNS 182 +A K E V T + + + ++NP + S + ++ N+ Sbjct: 136 -LAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQP--DNT 192 Query: 183 MIVEMNYGDNPWFP-QVLEDLRKRQQRTLDPNTYAWIWEGAYRQNSDAQVFANKYRIDSF 241 + Y DNP+ Q +++ ++R N + WE V N +I+ Sbjct: 193 FVHHSTYLDNPFISKQFIQEAESAKER----NEQRYRWEYMGEAIGSGVVPFNNLQIEKI 248 Query: 242 --EPKDHWDGPYHGLDFGFSQ--------------------------DPTAAVKCWIDGD 273 E +D + +DFG ++ DP A V+ D Sbjct: 249 PDELYKSFDNIRNAVDFGLTKTAPLHSDVYSKLGEHISGVRKKACATDPLAFVRWHYDKK 308 Query: 274 RLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRADCARPESVSHLRR-HGLPQVTSTS 332 + +I G+++ + + + AD A P+S++ L++ HG+ ++ Sbjct: 309 KRIIYAVDEHYGVQISNREFANWLKRRGYQSDEIYADSAEPKSIAELKQEHGIKRIKGVK 368 Query: 333 KWAGSVEDGIQFMRSFSEIVIH-ERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYID 391 K SVE G Q++ + IVI R I +EF Y+ DK+ G+V + DK NH ID Sbjct: 369 KGPDSVEHGEQWLDDLTAIVIDPNRTPNIAREFENIDYETDKD-GNVKPRLEDKDNHTID 427 Query: 392 AIRYAL 397 A RYAL Sbjct: 428 ATRYAL 433 >gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID :1257943 Length = 273 Score = 53.5 bits (127), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 112/254 (44%), Gaps = 17/254 (6%) Query: 153 EIWVTWNP-ELDGSTTDLRFRKQLDELEGNSMIVEMNYGDNPW----FPQVLEDLRKRQQ 207 + + T+NP + S + ++ Q N+ + Y DNP+ F E R+R + Sbjct: 12 KFFYTYNPPKRKQSWVNKKYESQFQP--SNTFVHASTYKDNPFIAKEFIAEAEATRERSE 69 Query: 208 RTLDPNTYAWIWEGAYRQNSDAQVFAN-KYRIDSFEPKDHWDGPYHGLDFGFSQDPTAAV 266 R Y W + G S F N ++ + E +D +G+D+G++ DP A V Sbjct: 70 RR-----YRWEYLGE-AIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFV 123 Query: 267 KCWIDGDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRADCARPESVSHLRRH-GL 325 + D + I G ++ + + + A+ A P+S + L+ G+ Sbjct: 124 RWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGI 183 Query: 326 PQVTSTSKWAGSVEDGIQFMRSFSEIVIH-ERCIEIQKEFRLYSYKVDKNSGDVLTTIVD 384 ++ K SVE G +++ I I +R I +EF Y+VD++ G+ + D Sbjct: 184 KRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLED 242 Query: 385 KHNHYIDAIRYALN 398 K NH IDA RYA++ Sbjct: 243 KVNHAIDATRYAMS 256 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 41.6 bits (96), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 306 VVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFR 365 + AD ARP++V+ + +GL + + +E + MR V+ + E Sbjct: 307 IFYADSARPDNVNEFQSNGLNCINANKNVLPGIECVARKMREGKFYVVDTASSGLLDE-- 364 Query: 366 LYSYKVDKNSGDVLTTIVDKHNHYIDAIRYALNPMIKKEEFI 407 +Y Y D+++G L +HN +DAIRYA+ KK FI Sbjct: 365 IYQYAWDESTGLPLKENDVRHNDRLDAIRYAIYSRNKKGGFI 406 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 40.8 bits (94), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 8/155 (5%) Query: 251 YHGLDFGFSQ-DPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRA 309 + G+D+G+ + IDG+ IE A + +DD + + + Sbjct: 254 FAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKF-IDDWVVIAKDIVSRYGNINFYC 312 Query: 310 DCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSY 369 D ARPE ++ RRH L + + VE+ + + +V+++ ++E ++ Y Sbjct: 313 DTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQE--VFKY 370 Query: 370 KVDKNSGDVLTTIVDKHNHYIDAIRYALNPMIKKE 404 +G+ + D +D++RYA+ K E Sbjct: 371 VWHPTNGEPIKEFDD----VLDSLRYAIYTHTKPE 401 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 40.8 bits (94), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 8/155 (5%) Query: 251 YHGLDFGFSQ-DPTAAVKCWIDGDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRA 309 + G+D+G+ + IDG+ IE A + +DD + + + Sbjct: 254 FAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKF-IDDWVVIAKDIVSRYGNINFYC 312 Query: 310 DCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSY 369 D ARPE ++ RRH L + + VE+ + + +V+++ ++E ++ Y Sbjct: 313 DTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQE--VFKY 370 Query: 370 KVDKNSGDVLTTIVDKHNHYIDAIRYALNPMIKKE 404 +G+ + D +D++RYA+ K E Sbjct: 371 VWHPTNGEPIKEFDD----VLDSLRYAIYTHTKPE 401 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 39.7 bits (91), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 75/327 (22%), Positives = 117/327 (35%), Gaps = 57/327 (17%) Query: 102 GNVEYIFTGLNRNLDSLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTEGSEIWVTWNPE 161 G IF + D A I + W+DE + + T G +++T+ PE Sbjct: 148 GLSSLIFKSYEMSQDKFMGTA-IDVIWLDEE--CPKDIYTQCVTRTATTGGIVYLTFTPE 204 Query: 162 LDGSTTDLRFRKQLDELEGNSMIVEMNYGDNPWF-PQVLEDLRKRQQRTLDPNTYAWIWE 220 + F L +L+ ++ ++ D P P+V E L P E Sbjct: 205 HGLTEIVKDF---LQDLKPGQFLIHASWEDAPHLSPEVKEQLLS----VYSPAERRMRAE 257 Query: 221 GAYRQNSDA--QVFANKYRIDSFEPKDHWDGPYH---GLDFGFSQDPTAAVKCW---IDG 272 G S + K+ + F+ DH +H G+D GF A W D Sbjct: 258 GIPMLGSGVVFPILEEKFVCEPFDIPDH----FHRIIGIDLGFDHPNAIACVAWDAEKDK 313 Query: 273 DRLMIEREAGKVGLELDDTAIFIE--QEIPEISRHVVRADCARPESVSHLRR-------- 322 L ER L + AI+++ +IP + H D + + + RR Sbjct: 314 YYLYDERSESGETLGMHADAIYLKGGHQIPVVVPH----DAFKHDGATSGRRFVDLLKDD 369 Query: 323 HGL---------PQVTSTSKWAGSVEDGIQFMRSFSE---IVIHERCIEIQKEFRLYSYK 370 H L P SVE G+ +M + E + + C KE ++Y K Sbjct: 370 HNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMYHRK 429 Query: 371 VDKNSGDVLTTIVDKHNHYIDAIRYAL 397 K IVD+++ I A RYAL Sbjct: 430 DGK--------IVDRNDDMISATRYAL 448 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 310 DCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSF---SEIVIHERCIEIQKEFRL 366 D + ++ L++ G K +V +GI+F+ S +I +HE C+ KEF Sbjct: 327 DPSAASFIAELKKRGYK----IKKARNNVLEGIRFVGSMLGQEKIAVHESCVNTLKEFHA 382 Query: 367 YSYKVDKNSGDVLTTIVDKHNHYIDAIRYALNPMIKKEE 405 Y + +K S + + + +H +DA+RY + +E Sbjct: 383 YVWD-EKASANGEDKPIKQFDHAMDALRYFCYTVYSSQE 420 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 86/396 (21%), Positives = 160/396 (40%), Gaps = 56/396 (14%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A G + +GKT+ F L+ + + + KD + + G Sbjct: 30 ASGAKRAGKTYVFILLFLMH-------------------IATYKDKGLNFIIGGATQASI 70 Query: 86 LKNYFD-----IGQEYIRTKN------GNVEYIFTGLNRNLDSLKSKARILI---AWVDE 131 +N D +G+E K+ GN Y+F G +N D+ K KAR A+++E Sbjct: 71 RRNILDDMELILGRELTLDKSNAVKIFGNKVYVFDG--QNSDAWK-KARGFTSAGAFLNE 127 Query: 132 AEGVSSMAWDKLEPTVRTEGSEIWVTWNPE--LDGSTTDL--RFRKQLDELEGNSMIVEM 187 + +M ++ +G+ I + NPE + D + ++L N + Sbjct: 128 GTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQF 187 Query: 188 NYGDNPWF-PQVLEDLRKRQQRTL--DPNTYA-WI-WEGAYRQNSDAQVFANKYRIDSFE 242 DN + + +E + + D + Y W+ EG ++ +V + + + F+ Sbjct: 188 TLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKV--HYIKEEEFK 245 Query: 243 PKDHWDGPYHGLDFGFSQDPTAAVKCW-IDGDRLMIEREAGKVGLELDDTAIFIEQEIPE 301 K Y G+D+G+ + V DG++ +IE A + E+DD + I Sbjct: 246 TK-QIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHR-HKEIDDWVAIAKGVIKR 303 Query: 302 ISRHVVRADCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQ 361 + D ARPE + RR + + +E I + ++I I + + + Sbjct: 304 HGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIE-VISRLFKLNKIFIIKEKVSLF 362 Query: 362 KEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 KE +Y+Y V K++ D + D +DA+RYA+ Sbjct: 363 KE-EIYNY-VWKDNADEPVKLNDDT---LDALRYAV 393 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%) Query: 251 YHGLDFGFSQDPTAAVKCW-IDGDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRA 309 Y G+D+G+ + V DG++ +IE A + E+DD + I + Sbjct: 251 YAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHR-HKEIDDWVAIAKGVIKRHGDILFYC 309 Query: 310 DCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSY 369 D ARPE + RR + + +E I + ++I I + + + KE +Y+Y Sbjct: 310 DTARPEHIERFRREKIKARYADKAVIAGIE-VISRLFKLNKIFIIKEKVSLFKE-EIYNY 367 Query: 370 KVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 V K++ D + D +DA+RYA+ Sbjct: 368 -VWKDNADEPVKLNDDT---LDALRYAV 391 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%) Query: 251 YHGLDFGFSQDPTAAVKCW-IDGDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRA 309 Y G+D+G+ + V DG++ +IE A + E+DD + I + Sbjct: 250 YAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHR-HKEIDDWVAIAKGVIKRHGDILFYC 308 Query: 310 DCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSY 369 D ARPE + RR + + +E I + ++I I + + + KE +Y+Y Sbjct: 309 DTARPEHIERFRREKIKARYADKAVIAGIE-VISRLFKLNKIFIIKEKVSLFKE-EIYNY 366 Query: 370 KVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 V K++ D + D +DA+RYA+ Sbjct: 367 -VWKDNADEPVKLNDDT---LDALRYAV 390 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 33.5 bits (75), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%) Query: 251 YHGLDFGFSQDPTAAVKCW-IDGDRLMIEREAGKVGLELDDTAIFIEQEIPEISRHVVRA 309 Y G+D+G+ + V DG++ +IE A + E+DD + I + Sbjct: 250 YAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHR-HKEIDDWVAIAKGVIKRHGDILFYC 308 Query: 310 DCARPESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSFSEIVIHERCIEIQKEFRLYSY 369 D ARPE + RR + + +E I + ++I I + + + KE +Y+Y Sbjct: 309 DTARPEHIERFRREKIKARYADKAVIAGIE-VISRLFKLNKISIIKEKVSLFKE-EIYNY 366 Query: 370 KVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 V K++ D + D +DA+RYA+ Sbjct: 367 -VWKDNADEPVKLNDDT---LDALRYAV 390 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 32.3 bits (72), Expect = 0.011, Method: Compositional matrix adjust. Identities = 86/393 (21%), Positives = 150/393 (38%), Gaps = 35/393 (8%) Query: 28 GGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDWLK 87 G +GKT AL S I M SGQ+ + A + + S + + + ++ +ES + Sbjct: 37 GSVRAGKTVVMAL-SYILWSMTNFSGQQFGM--AGKTIGSFRRNVLRPLRSMLESEGY-- 91 Query: 88 NYFDIGQEYIRT--KNG--NVEYIFTGLNRNLDSLKSKARILIAWVDEAEGVSSMAWDKL 143 N +D E + T KNG N +IF G + L + + DE + ++ Sbjct: 92 NVYDSRSENMITISKNGHTNFYFIFGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQA 151 Query: 144 EPTVRTEGSEIWVTWNPELDGSTTDLRFRKQLDELEGNSMIVEMNYGDNPWFPQVLEDLR 203 GS++W NP L + Q+ + ++ + DNP V + Sbjct: 152 TARCSVTGSKMWFNCNPSGPFHWFKLNWIDQMKD--KRALRIHFTMHDNPSLDSVTINRY 209 Query: 204 KRQQRTLDPNTY---AWIW-EGAYRQNSDAQVFANKYRIDSFEPKDHWDGPYHGLDFGFS 259 +R + Y W+ EG N D E +H++ Y D+G + Sbjct: 210 ERMYSGVFYQRYIQGLWVMSEGVIYDNFDKDTMVVN------ELPNHFEKYYVSCDYG-T 262 Query: 260 QDPTAAVKCWIDGDRLMIEREAGKVG-----LELDDTAIFIEQEIPEISRHVVRADCARP 314 +PTA + + + +E G + D+ +E R + D + Sbjct: 263 LNPTAFLLWGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAA 322 Query: 315 ESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSF---SEIVIHERCIEIQKEFRLYSYKV 371 + LR++G K V DGI+ ++ +I C + KE Y + Sbjct: 323 SFSTTLRQNGF----KVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD- 377 Query: 372 DKNSGDVLTTIVDKHNHYIDAIRYALNPMIKKE 404 DK + V +H+H DA+RY + +I K+ Sbjct: 378 DKAAEHGEDKPVKQHDHACDAMRYFVYTIIYKK 410 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneI D:3197313 Length = 453 Score = 32.0 bits (71), Expect = 0.014, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 17 SEPYRRIRGAYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEV 76 S+PY ++G GR S K+ AL + G+K ++ R+ N+++DS ++ Sbjct: 28 SKPYNILKG---GRNSFKSSVIALKLVFMMLLYILKGEKANVVVIRKVGNTIRDSVFNKI 84 Query: 77 KGAIE 81 + AI+ Sbjct: 85 QWAIK 89 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 31.2 bits (69), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 20/92 (21%) Query: 314 PESVSHLRRHGLPQVTSTSKWAGSVEDGIQFMRSF--------SEIVIHERCIEIQKEFR 365 P + R+ P V + S++ GI +RS +++ +RC E+ +EF Sbjct: 349 PAHIEQFRKANWPAVKAEK----SLDGGIDHVRSRLAMDDEGRPGVLVTDRCGELIQEF- 403 Query: 366 LYSYKVDKNSGDVLTTIVDKHNHYIDAIRYAL 397 SYK D +H +DA+RYAL Sbjct: 404 -LSYKEDH------VGTSKAQDHALDALRYAL 428 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 27.3 bits (59), Expect = 0.36, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 369 YKVDKNSGDVLTTIVDKHNHYIDAIRYALNPMIKKEEFI 407 Y D+NSG VDK+NH +D RYA N + E I Sbjct: 405 YVRDENSGKP----VDKNNHAMDTSRYATNYFYRNYEDI 439 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 24.3 bits (51), Expect = 2.6, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 31/217 (14%) Query: 86 LKNYFDI-GQEYIRTKNGNVEYIFTGLNRNLDSLKSKARILIAWVDEAEGVSSMAWDKLE 144 ++N D G E I NG+ I G N L A + I +DEA+ ++ A D L Sbjct: 123 VRNVSDARGDEGIYLHNGS--RILFGARENGFGL-GFAGVGILVLDEAQRLTDKAMDDLI 179 Query: 145 PTVRT-EGSEIWVTWNPELDGSTTDLRFRKQLDELEGNS---MIVEMNYGD--------- 191 PT+ T E I +T P + ++ + D L+G S + VE + + Sbjct: 180 PTMNTVENPLILLTGTPPRPTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQ 239 Query: 192 ----NPWFP-QVLEDLRKRQQRTLDPNTYA----WIWEGAYRQNSDAQVFANKY-RIDSF 241 NP +P + E +R ++ L ++ IW+ + V A ++ R++S Sbjct: 240 LRKANPSYPHRTSERAIRRMRKNLTEESFLREAFGIWDKVVHR---PVVTAARWRRLEST 296 Query: 242 EPKDHWDGPYHGLDFGFSQDPTAAVKCWIDGDRLMIE 278 P G+D S+ + W+DGD+ E Sbjct: 297 GPAAGVKPNGFGVDMSHSR-MVSVNAVWLDGDQAHTE 332 >gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469154;genbank:gi:157834997;genbank:Ge neID:5648803 Length = 591 Score = 24.3 bits (51), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Query: 84 DWLKNYFDIGQEYIRTKNGNVEYIFTGLNRNLDSLKSKAR 123 DWL+ D Y+ +G+V+Y+ G N D S+A+ Sbjct: 237 DWLEKAID----YLGPPDGSVKYLGVGTVLNKDDPISRAK 272 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 383 VDKHNHYIDAIRYALNPMIKK 403 +DK NH +D RY++N + + Sbjct: 380 IDKDNHAMDEFRYSVNVFVHR 400 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust. Identities = 8/21 (38%), Positives = 14/21 (66%) Query: 383 VDKHNHYIDAIRYALNPMIKK 403 +DK NH +D RY++N + + Sbjct: 352 IDKDNHAMDEFRYSVNVFVHR 372 >gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512256;genbank:gi:89152423;genbank:GeneID :3952979 Length = 491 Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTEGSE-IWVTW-NPELDGSTTDLRFRK 173 L ++ + +I DEA ++ + W+ E + E +E IWV + NP + FRK Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 >gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848210;genbank:gi:30387381;genbank:GeneID :2641874 Length = 491 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 117 SLKSKARILIAWVDEAEGVSSMAWDKLEPTVRTEGSE-IWVTW-NPELDGSTTDLRFRK 173 L ++ + +I DEA ++ + W+ E + E +E IWV + NP + FRK Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 8/22 (36%), Positives = 15/22 (68%) Query: 29 GRGSGKTFSFALMSAIRAYMAA 50 GRG GKT+ A+++A ++ + Sbjct: 129 GRGQGKTYLMAILTAYSYFIES 150 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 23.9 bits (50), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 342 IQFMRSFSEIVIHERCIEIQKEFRLYSYKVDKNSGDVLTTIVDKHNHYIDAIRYALNPMI 401 + F R + +R +Q E SY+V D T D++ H +D I +AL Sbjct: 498 LMFEREMVALAPKDRDTIVQFE----SYEVKSWGSDGRPTYTDENEHILDCIVFALYGFT 553 Query: 402 KKEEFIFEV 410 K + I +V Sbjct: 554 KYYDDILKV 562 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 8/22 (36%), Positives = 15/22 (68%) Query: 29 GRGSGKTFSFALMSAIRAYMAA 50 GRG GKT+ A+++A ++ + Sbjct: 129 GRGQGKTYLMAILTAYSYFIES 150 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 22.7 bits (47), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 26 AYGGRGSGKTFSFALMSAIRAYMAAESGQKGVILCAREWMNSLKDSSMAEVKGAIESVDW 85 A +G + +RA AAE+ +K V E + L A+V I+S +W Sbjct: 265 AQANPSAGYLAGMTIAGLMRA--AAEAKEKNV-----ERIEVLGQWVTAKVDNFIDSEEW 317 Query: 86 LKNYFDIGQEYIRTKNG 102 + D+ + R NG Sbjct: 318 KSRHRDVASIFARIPNG 334 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.135 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 200,006 Number of Sequences: 514 Number of extensions: 9967 Number of successful extensions: 152 Number of sequences better than 100.0: 58 Number of HSP's better than 100.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 60 length of query: 410 length of database: 206,069 effective HSP length: 74 effective length of query: 336 effective length of database: 168,033 effective search space: 56459088 effective search space used: 56459088 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)