Virfam_CNT_anal:NC_018264

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : THSA-485A | Genbank acc : NC_018264

Category to which the Query Phage was assigned :

The queried phage did not match all the conditions required to be definitively assigned to any of the 4 canonical Types characterized in Lopes et al (2014)
From the subunits detected, the phage appears as an hybrid exception containing superfamilies from different canonical Types

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	32	lcl\|NC_018264.1_cdsid_YP_006546301.1	HHsearch (proba=100.00%)
Portal	33	lcl\|NC_018264.1_cdsid_YP_006546302.1	HHsearch (proba=100.00%)
TermL	34	lcl\|NC_018264.1_cdsid_YP_006546303.1	Blast (e-value=3e-75)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	27	lcl\|NC_018264.1_cdsid_YP_006546296.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	28	lcl\|NC_018264.1_cdsid_YP_006546297.1	HHsearch (proba=77.69%)
Ad3	NOT FOUND
Hc3	17	lcl\|NC_018264.1_cdsid_YP_006546286.1	HHsearch (proba=99.91%)
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:4074 protein:vir:97397	phi 4795 c2 Q54	15 % 15 % 10 %
Portal	protein:vir:102727 protein:vir:99312 protein:vir:95599	YS40 K G1	18 % 17 % 17 %
TermL	protein:vir:79016 protein:vir:106641 protein:vir:9921	phiC2 187 315.6	38 % 37 % 37 %
Ne1	protein:vir:99101 protein:vir:8669 protein:vir:97982	Qyrzula Rosebush Orion	29 % 29 % 28 %
Tc2	protein:vir:104479	P-SSM4	14 %
Hc3	protein:vir:10145 protein:vir:9979 protein:vir:3306	Stx2 converting bacteriophage II Stx1 converting bacteriophage 933W	17 % 17 % 17 %