Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 54 lcl|Aclame:protein:vir:3298|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 52 lcl|Aclame:protein:vir:3296|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 51 lcl|Aclame:protein:vir:3295|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 57 lcl|Aclame:protein:vir:3301|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc3 62 lcl|Aclame:protein:vir:3306|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad3<->Hc3 5 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104439
protein:vir:10123
protein:vir:3298
86
Stx2 converting bacteriophage II
933W
100 %
100 %
100 %
Portal protein:vir:10117
protein:vir:9950
protein:vir:3296
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
933W
100 %
100 %
100 %
TermL protein:vir:104436
protein:vir:10116
protein:vir:9949
86
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
100 %
100 %
100 %
Ad3 protein:vir:10130
protein:vir:9964
protein:vir:104383
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
86
100 %
100 %
99 %
Hc3 protein:vir:10145
protein:vir:9979
protein:vir:3306
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
933W
100 %
100 %
100 %