Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP NOT FOUND
Portal 8 lcl|Aclame:protein:vir:97900|NCBI_annot:gp8|genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneI HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:97894|NCBI_annot:gp2|genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 22 lcl|Aclame:protein:vir:97979|NCBI_annot:gp22|genbank:acc:YP_655118;genbank:gi:109391868;genbank:Gene HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 25 lcl|Aclame:protein:vir:97982|NCBI_annot:gp25|genbank:acc:YP_655121;genbank:gi:109391871;genbank:Gene HHsearch (proba=100.00%)
Tc1 23 lcl|Aclame:protein:vir:97980|NCBI_annot:gp23|genbank:acc:YP_655119;genbank:gi:109391869;genbank:Gene HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
Portal protein:vir:97900
protein:vir:107517
protein:vir:106027
Orion
PG1
Cooper
100 %
100 %
55 %
TermL protein:vir:97894
protein:vir:107494
protein:vir:106049
Orion
PG1
Cooper
100 %
100 %
66 %
Ad1 protein:vir:97979
protein:vir:107532
protein:vir:106038
Orion
PG1
Cooper
100 %
100 %
59 %
Ne1 protein:vir:97982
protein:vir:107545
protein:vir:106041
Orion
PG1
Cooper
100 %
100 %
66 %
Tc1 protein:vir:97980
protein:vir:107514
protein:vir:106039
Orion
PG1
Cooper
100 %
100 %
64 %