Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : c2 | Genbank acc : NC_001706 | Aclame index mge :85

Category to which the Query Phage was assigned :

The queried phage could not be assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 39

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	27	lcl\|Aclame:protein:vir:4074\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	26	lcl\|Aclame:protein:vir:4073\|NCBI_annot:minor	HHsearch (proba=100.00%)
TermL	34	lcl\|Aclame:protein:vir:4081\|NCBI_annot:terminase\|genbank:acc:NP_043560;genbank:gi:9628694;genbank:Ge	Blast (e-value=0)
MTP	29	lcl\|Aclame:protein:vir:4076\|NCBI_annot:major	Blast (e-value=1e-117)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4074 protein:vir:97397 protein:vir:93858	c2 Q54 712	100 % 24 % 17 %
Portal	protein:vir:4073 protein:vir:97376 protein:vir:94002	c2 Q54 jj50	100 % 23 % 17 %
TermL	protein:vir:4081 protein:vir:97407 protein:vir:78630	c2 Q54 tp310-2	100 % 31 % 21 %
MTP	protein:vir:4076 protein:vir:97406 protein:vir:968	c2 Q54 bIL285	96 % 32 % 17 %