Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Stx2 converting bacteriophage II | Genbank acc : NC_004914 | Aclame index mge :180

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 169

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:10123\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	2	lcl\|Aclame:protein:vir:10117\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	1	lcl\|Aclame:protein:vir:10116\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	15	lcl\|Aclame:protein:vir:10130\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc3	30	lcl\|Aclame:protein:vir:10145\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad3<->Hc3	15	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104439 protein:vir:10123 protein:vir:3298	86 Stx2 converting bacteriophage II 933W	100 % 100 % 100 %
Portal	protein:vir:10117 protein:vir:9950 protein:vir:3296	Stx2 converting bacteriophage II Stx1 converting bacteriophage 933W	100 % 100 % 100 %
TermL	protein:vir:104436 protein:vir:10116 protein:vir:9949	86 Stx2 converting bacteriophage II Stx1 converting bacteriophage	100 % 100 % 100 %
Ad3	protein:vir:10130 protein:vir:9964 protein:vir:104383	Stx2 converting bacteriophage II Stx1 converting bacteriophage 86	100 % 100 % 99 %
Hc3	protein:vir:10145 protein:vir:9979 protein:vir:3306	Stx2 converting bacteriophage II Stx1 converting bacteriophage 933W	100 % 100 % 100 %