Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : YS40 | Genbank acc : NC_008584 | Aclame index mge :1610

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 170

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	73	lcl\|Aclame:protein:vir:102823\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:102727\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	62	lcl\|Aclame:protein:vir:102747\|NCBI_annot:terminase	Blast (e-value=0)
MTP	NOT FOUND
Sheath	69	lcl\|Aclame:protein:vir:102819\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	145	lcl\|Aclame:protein:vir:102722\|NCBI_annot:hypothetical	HHsearch (proba=78.76%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102823 protein:vir:80835 protein:vir:80491	YS40 phiEF24C A511	100 % 20 % 20 %
Portal	protein:vir:102727 protein:vir:96579 protein:vir:80644	YS40 Twort A511	100 % 20 % 20 %
TermL	protein:vir:102747 protein:vir:98727 protein:vir:5662	YS40 Ma-LMM01 KVP40	100 % 20 % 16 %
Sheath	protein:vir:102819 protein:vir:99306 protein:vir:96586	YS40 K Twort	92 % 21 % 21 %
Ad1	protein:vir:8104	Che9c	18 %