Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : bV_EcoS_AKFV33 | Genbank acc : NC_017969

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 160

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	150	lcl\|NC_017969.1_cdsid_YP_006382449.1	HHsearch (proba=100.00%)
Portal	153	lcl\|NC_017969.1_cdsid_YP_006382452.1	HHsearch (proba=100.00%)
TermL	156	lcl\|NC_017969.1_cdsid_YP_006382455.1	Blast (e-value=0)
MTP	152	lcl\|NC_017969.1_cdsid_YP_006382451.1	Blast (e-value=2e-17)
Sheath	NOT FOUND
Ad1	149	lcl\|NC_017969.1_cdsid_YP_006382448.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	147	lcl\|NC_017969.1_cdsid_YP_006382446.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104256 protein:vir:9643 protein:vir:485	T5 315.1 P27	89 % 19 % 19 %
Portal	protein:vir:104259 protein:vir:79984 protein:vir:9408	T5 tp310-3 phi 13	99 % 20 % 20 %
TermL	protein:vir:104262 protein:vir:9870 protein:vir:102238	T5 315.5 PBI1	100 % 23 % 22 %
MTP	protein:vir:196 protein:vir:93600 protein:vir:105771	HK97 phi 4795 ES18	34 % 29 % 25 %
Ad1	protein:vir:104255 protein:vir:1271 protein:vir:4512	T5 phi-105 V	95 % 22 % 20 %
Tc1	protein:vir:104224 protein:vir:79571 protein:vir:3428	T5 cdtI lambda	99 % 21 % 22 %