Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi 13 | Genbank acc : NC_004617 | Aclame index mge :167

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 49

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|Aclame:protein:vir:9410\|NCBI_annot:head	HHsearch (proba=100.00%)
Portal	31	lcl\|Aclame:protein:vir:9408\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	29	lcl\|Aclame:protein:vir:9406\|NCBI_annot:terminase-large	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	34	lcl\|Aclame:protein:vir:9411\|NCBI_annot:phi	HHsearch (proba=99.90%)
Hc1	36	lcl\|Aclame:protein:vir:9413\|NCBI_annot:phi	HHsearch (proba=100.00%)
Ne1	37	lcl\|Aclame:protein:vir:9414\|NCBI_annot:phi	HHsearch (proba=100.00%)
Tc1	38	lcl\|Aclame:protein:vir:9415\|NCBI_annot:phi	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:81100 protein:vir:79987 protein:vir:98339	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
Portal	protein:vir:79984 protein:vir:98396 protein:vir:9408	tp310-3 phiPVL(108) phi 13	100 % 100 % 100 %
TermL	protein:vir:81099 protein:vir:79971 protein:vir:98395	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
Ad1	protein:vir:81089	tp310-1	100 %
Hc1	protein:vir:81103 protein:vir:79989 protein:vir:98341	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
Ne1	protein:vir:81106 protein:vir:79988 protein:vir:98342	tp310-1 tp310-3 phiPVL(108)	100 % 100 % 100 %
Tc1	protein:vir:98343 protein:vir:9415 protein:vir:81093	phiPVL(108) phi 13 tp310-1	100 % 100 % 99 %