Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 33 lcl|Aclame:protein:vir:9410|NCBI_annot:head HHsearch (proba=100.00%)
Portal 31 lcl|Aclame:protein:vir:9408|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 29 lcl|Aclame:protein:vir:9406|NCBI_annot:terminase-large Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 34 lcl|Aclame:protein:vir:9411|NCBI_annot:phi HHsearch (proba=99.90%)
Hc1 36 lcl|Aclame:protein:vir:9413|NCBI_annot:phi HHsearch (proba=100.00%)
Ne1 37 lcl|Aclame:protein:vir:9414|NCBI_annot:phi HHsearch (proba=100.00%)
Tc1 38 lcl|Aclame:protein:vir:9415|NCBI_annot:phi HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:81100
protein:vir:79987
protein:vir:98339
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
Portal protein:vir:79984
protein:vir:98396
protein:vir:9408
tp310-3
phiPVL(108)
phi 13
100 %
100 %
100 %
TermL protein:vir:81099
protein:vir:79971
protein:vir:98395
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
Ad1 protein:vir:81089tp310-1100 %
Hc1 protein:vir:81103
protein:vir:79989
protein:vir:98341
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
Ne1 protein:vir:81106
protein:vir:79988
protein:vir:98342
tp310-1
tp310-3
phiPVL(108)
100 %
100 %
100 %
Tc1 protein:vir:98343
protein:vir:9415
protein:vir:81093
phiPVL(108)
phi 13
tp310-1
100 %
100 %
99 %