Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 315.1 | Genbank acc : NC_004584 | Aclame index mge :173

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|Aclame:protein:vir:9643\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	31	lcl\|Aclame:protein:vir:9641\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	30	lcl\|Aclame:protein:vir:9640\|NCBI_annot:large	Blast (e-value=0)
MTP	39	lcl\|Aclame:protein:vir:9649\|NCBI_annot:putative	Blast (e-value=1e-110)
Sheath	NOT FOUND
Ad1	35	lcl\|Aclame:protein:vir:9645\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	36	lcl\|Aclame:protein:vir:9646\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	37	lcl\|Aclame:protein:vir:9647\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	38	lcl\|Aclame:protein:vir:9648\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9643 protein:vir:98635 protein:vir:78350	315.1 phi3396 B025	100 % 97 % 43 %
Portal	protein:vir:9641 protein:vir:98643 protein:vir:95965	315.1 phi3396 2638A	100 % 96 % 28 %
TermL	protein:vir:9640 protein:vir:98644 protein:vir:78311	315.1 phi3396 B025	100 % 97 % 50 %
MTP	protein:vir:9649 protein:vir:98634 protein:vir:78634	315.1 phi3396 tp310-2	100 % 91 % 28 %
Ad1	protein:vir:9645 protein:vir:98637 protein:vir:78326	315.1 phi3396 B025	100 % 98 % 30 %
Hc1	protein:vir:9646 protein:vir:98638 protein:vir:78327	315.1 phi3396 B025	100 % 98 % 31 %
Ne1	protein:vir:98636 protein:vir:9647 protein:vir:78644	phi3396 315.1 tp310-2	100 % 100 % 29 %
Tc1	protein:vir:9648 protein:vir:98629 protein:vir:78349	315.1 phi3396 B025	100 % 99 % 29 %