Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PAK_P1 | Genbank acc : NC_015294

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 158

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	54	lcl\|NC_015294.1_cdsid_YP_004327199.1	HHsearch (proba=100.00%)
Portal	50	lcl\|NC_015294.1_cdsid_YP_004327195.1	HHsearch (proba=100.00%)
TermL	49	lcl\|NC_015294.1_cdsid_YP_004327194.1	Blast (e-value=1e-83)
MTP	NOT FOUND
Sheath	59	lcl\|NC_015294.1_cdsid_YP_004327204.1	HHsearch (proba=100.00%)
Ad1	55	lcl\|NC_015294.1_cdsid_YP_004327200.1	HHsearch (proba=100.00%)
Hc1	57	lcl\|NC_015294.1_cdsid_YP_004327202.1	HHsearch (proba=100.00%)
Ne1	56	lcl\|NC_015294.1_cdsid_YP_004327201.1	HHsearch (proba=100.00%)
Tc1	58	lcl\|NC_015294.1_cdsid_YP_004327203.1	HHsearch (proba=97.08%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:98480	Felix 01 VHML VWB	29 % 27 % 15 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	39 % 21 % 19 %
TermL	protein:vir:95253 protein:vir:97250 protein:vir:94970	Felix 01 M6 Xp15	39 % 19 % 19 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:5260	Felix 01 B054 Aaphi23	28 % 22 % 20 %
Ad1	protein:vir:95259	Felix 01	27 %
Hc1	protein:vir:5258 protein:vir:95261 protein:vir:107716	Aaphi23 Felix 01 BcepB1A	23 % 21 % 18 %
Ne1	protein:vir:94069 protein:vir:99546 protein:vir:5257	OP2 BcepF1 Aaphi23	29 % 28 % 28 %
Tc1	protein:vir:3637 protein:vir:101569 protein:vir:78612	Bcep781 Bcep43 BcepNY3	19 % 20 % 18 %