Query lcl|NC_015294.1_cdsid_YP_004327200.1 [gene=PsPhPAKP1_gp055] [protein=hypothetical protein] [protein_id=YP_004327200.1] [location=31417..31893] Match_columns 158 No_of_seqs 4 out of 7 Neff 2.0 Searched_HMMs 1612 Date Thu Nov 7 14:16:10 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_55 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_55_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:95259 Length: 149 100.0 2.2E-88 1.4E-91 501.1 10.2 148 1-152 1-149 (149) 2 protein:vir:3615 Length: 110 # 2.6 25 0.016 12.9 2.2 97 9-127 1-110 (110) 3 protein:vir:9928 Length: 118 # 2.4 28 0.017 12.6 2.7 98 6-103 1-118 (118) 4 protein:vir:98861 Length: 193 2.2 30 0.019 12.5 4.4 104 1-119 77-193 (193) 5 protein:vir:80036 Length: 111 1.4 46 0.028 11.4 2.2 90 8-99 1-111 (111) 6 protein:vir:3847 Length: 118 # 1.1 38 0.024 11.9 0.5 41 112-158 1-43 (118) 7 protein:vir:100598 Length: 516 1.1 48 0.03 11.3 0.9 130 1-158 48-223 (516) 8 protein:vir:4999 Length: 116 # 1.1 37 0.023 11.9 0.2 47 111-158 1-67 (116) 9 protein:vir:1643 Length: 111 # 0.9 74 0.046 10.3 2.7 83 27-136 1-111 (111) 10 protein:vir:1845 Length: 392 # 0.8 58 0.036 10.9 0.4 80 1-87 303-392 (392) No 1 >protein:vir:95259 Length: 149 # NCBI annotation: Phage hypothetical protein # Family: family:all:31734 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944892;genbank:gi:38707832;genbank:GeneID:2744045 Probab=100.00 E-value=2.2e-88 Score=501.12 Aligned_cols=148 Identities=27% Similarity=0.451 Sum_probs=130.1 Q ss_pred CCcCCCCCcchhhhhhhhhccCCCcccccccc-eeEEEeccCCchhHHHHHHHHHHHHHHHhhhhhccCceEEeccHHHH Q lcl|NC_015294. 1 MAYTGDPANNPIDRLREIVGDVWEPPMLSDET-YQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFN 79 (158) Q Consensus 1 M~YTGdPanNplDrlRil~~D~~dd~ml~de~-~q~f~~~~~~nerrAai~~lr~iLfq~ar~~~Er~G~i~~~~sd~f~ 79 (158) |||||||||||||||||||||||||+||+|++ |||||++|+||||||||++|||||||||||+|||||||||||||||+ T Consensus 1 M~YTGdPanNplDrlRil~~D~~~d~~li~ds~~q~f~~~~~~nerrAal~~lr~iLfqlar~~~Er~G~i~~~~sd~fk 80 (149) T protein:vir:95 1 MCYTGDPANNPLDRVRILCTDTNNDEILIEQSVLEWFYLESGKDEKKAAIKALKYLLFQVAKMGDEKVGGVYLRNSSRFK 80 (149) T ss_pred CCcCCCCCcChhhhhhhhhccCCCcchhccccceeeeeeccCCchhHHHHHHHHHHHHHHHhhhhhccCceEEeccHHHH Confidence 99999999999999999999999996666555 89999999999999999999999999999999999999999999995 Q ss_pred HHHHHHHHHHhCcceeeeeccccccccchhhHHHhcCCccccceeeEeccccccccccccCCCcchhhhhhhh Q lcl|NC_015294. 80 NYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDY 152 (158) Q Consensus 80 ny~kaLq~i~kd~~~~~v~~~PYaGGIsk~Dm~m~~~nPdnV~r~~~~G~a~~~~~~~~cn~g~~d~~~~~~~ 152 (158) +|+++| +||++++|+|||||||||||||+||+||||||+|++||||||||+||||||.--.-.-.--|- T Consensus 81 a~k~~l----~Dl~k~~v~~~PYaGGIs~~Dm~m~~~nPdnV~r~~~~G~a~~~~~~~~cn~~~~~~~~~~~~ 149 (149) T protein:vir:95 81 SLKAVY----DDLVKSSVSGLPYAGGINQCDIDMRRQNPCSVKKYTEYGDAARYEGRDYCNRVNGVFIIERDE 149 (149) T ss_pred HHHHHH----HhhhhhhhhccccccccchhhHHHhcCCccccceeEEecccccchhhhhhccccceEEEeeCC Confidence 555555 555558999999999999999999999999999999999999999999999743211111111 No 2 >protein:vir:3615 Length: 110 # NCBI annotation: ORF38 # Family: family:all:372 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneID:921067 Probab=2.56 E-value=25 Score=12.88 Aligned_cols=97 Identities=9% Similarity=0.145 Sum_probs=56.5 Q ss_pred cchhhhhhhhhccCCCc--ccccccceeEEEeccCCchhHHHHHHHHHHHHHHHhh-----hh-----hccCceEE-ecc Q lcl|NC_015294. 9 NNPIDRLREIVGDVWEP--PMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRG-----MR-----ERTGDIEV-YGA 75 (158) Q Consensus 9 nNplDrlRil~~D~~dd--~ml~de~~q~f~~~~~~nerrAai~~lr~iLfq~ar~-----~~-----Er~G~i~~-~~s 75 (158) =.-|++|+.+.+.+.|+ ..|.+.+-+-+...-+-+. -..-+.|-+|+.++|=. +. +-.||+-. +.+ T Consensus 1 M~~L~~vK~~lg~~~D~lL~~li~~a~~~i~~~~~~~~-~eiP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~~ 79 (110) T protein:vir:36 1 MAITDDLKMLLGGSLDERLEVIEKRTRDRLLLILGSDI-KEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFSE 79 (110) T ss_pred ChhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhCCCh-hhhhhHHHHHHHHHHHHHhccccccccceeecCCceeeecc Confidence 56799999999987655 3444444444444333210 12457777888777632 22 23456655 677 Q ss_pred HHHHHHHHHHHHHHhCcceeeeeccccccccchhhHHHhcCCccccceeeEe Q lcl|NC_015294. 76 EYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYI 127 (158) Q Consensus 76 d~f~ny~kaLq~i~kd~~~~~v~~~PYaGGIsk~Dm~m~~~nPdnV~r~~~~ 127 (158) +-|..|..-|+.-.++-+.. +.-++.+-.|| T Consensus 80 ~d~~~y~~~l~~y~~~~~~~---------------------~~~~~g~~~f~ 110 (110) T protein:vir:36 80 SDFDEYADEIESWRKSRETE---------------------GDKKIGRFRLY 110 (110) T ss_pred cCcchHHHHHHHHHhhhccc---------------------cCCcceeeeeC Confidence 78999999998877654320 12233333333 No 3 >protein:vir:9928 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795690;genbank:gi:28876458;genbank:GeneID:1258013 Probab=2.39 E-value=28 Score=12.63 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=52.8 Q ss_pred CCCcchhhhhhhhhc----cCCCccccc---ccceeEE--EeccCCc-hhHHHHHHHHHHHHHHHh-----hhh-----h Q lcl|NC_015294. 6 DPANNPIDRLREIVG----DVWEPPMLS---DETYQWV--LDKNEGN-ERRAALELMRMMLFRLTR-----GMR-----E 65 (158) Q Consensus 6 dPanNplDrlRil~~----D~~dd~ml~---de~~q~f--~~~~~~n-errAai~~lr~iLfq~ar-----~~~-----E 65 (158) =+.+.-|++|..+.| |...|+.|. +.+-+-+ |....+. ..-..-+.|-+|+-.+|= .+. + T Consensus 1 md~~~~L~~vK~~lgI~~~D~~~D~lL~~~i~~a~~~i~~~l~~~~~~~~~eiP~~l~~iv~evav~ryNR~g~EG~~S~ 80 (118) T protein:vir:99 1 MGDKQLIDDIKLFIGISKGDGAQDELITLAIYESKERVLAKLNEYSETEITKIPDRLRFIVRDVAIKRFNRINSEGAVED 80 (118) T ss_pred CchhhHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHhcCcCCccccee Confidence 567899999999987 677665443 3322211 1111111 123455667777777653 222 2 Q ss_pred ccCceEEeccHHHHHHHHHHHHHHhCcceeeeeccccc Q lcl|NC_015294. 66 RTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYA 103 (158) Q Consensus 66 r~G~i~~~~sd~f~ny~kaLq~i~kd~~~~~v~~~PYa 103 (158) -.+|+-.-=.+.|..|...|+..++.-..+.=..+=+. T Consensus 81 SeeG~S~sf~~d~~ey~~~l~~~~~~~~~~~~g~v~Fi 118 (118) T protein:vir:99 81 SEEGKTFKWDSYLKEYESTLRSAAIGKVYSGKGVARFI 118 (118) T ss_pred ecCCeeeeeccCchhHHHHHHHHhhhcccCcCcceeeC Confidence 34555543245699999999988764432111011111 No 4 >protein:vir:98861 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:669 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654737;genbank:gi:109302922;genbank:GeneID:4156066 Probab=2.22 E-value=30 Score=12.45 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=56.4 Q ss_pred CCcCCCCCcchhhhhhhhhccCCCcccc---cccceeEEEeccCCchhHHHHH---HHHHHHHHHHhhhhhccCceEEec Q lcl|NC_015294. 1 MAYTGDPANNPIDRLREIVGDVWEPPML---SDETYQWVLDKNEGNERRAALE---LMRMMLFRLTRGMRERTGDIEVYG 74 (158) Q Consensus 1 M~YTGdPanNplDrlRil~~D~~dd~ml---~de~~q~f~~~~~~nerrAai~---~lr~iLfq~ar~~~Er~G~i~~~~ 74 (158) |+-.++ ++.|.+-+- ...++|.+..-..-.--+|.|+ ++|.-| .+|++|.----.-+.| T Consensus 77 ~~l~~~-------------~~~w~~Av~~A~~~~SvE~vV~~~~~~adka~i~a~qa~~~eL--~~k~gR~vffi~av~g 141 (193) T protein:vir:98 77 MLVPQD-------------SYDFRAAVRKANEVASFEYAVNTHATGVDKAAINKLQELYIEL--LTKLGRRTFFIQAIAG 141 (193) T ss_pred EEecCC-------------ChhHHHHHHHHHhhcCcceEEEeccCccCHHHHHHHHHHHHHH--HhhccceeeeeeeccC Confidence 433221 122443111 1223354332222111234444 444333 3566665433333444 Q ss_pred c-------HHHHHHHHHHHHHHhCcceeeeeccccccccchhhHHHhcCCcc Q lcl|NC_015294. 75 A-------EYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPD 119 (158) Q Consensus 75 s-------d~f~ny~kaLq~i~kd~~~~~v~~~PYaGGIsk~Dm~m~~~nPd 119 (158) - +-|..|..+|.+|.++-.-..|.-+|..=|-..-=++=|=||-. T Consensus 142 i~~~~~~getWsey~~~~~aL~~giaa~~V~lVP~l~Gn~~GvlAGRLcnA~ 193 (193) T protein:vir:98 142 VNPDSGDGETWAQYVQKLTTLQQTVVADHVMLVPLLFGNEVGVIAGRLLIAR 193 (193) T ss_pred CCCCCCCccCHHHHHHHHHhhhhhhcccceeeeeeEeCCChhhhhceeccCC Confidence 3 57999999999999999888899999876655544555555544 No 5 >protein:vir:80036 Length: 111 # NCBI annotation: gp10 # Family: family:all:3186 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468714;genbank:gi:157325294;genbank:GeneID:5601727 Probab=1.44 E-value=46 Score=11.45 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=52.4 Q ss_pred CcchhhhhhhhhccC---CCc--ccccccceeEEEeccCCchhHHHHHHHHHHHHHHHhh-----hhhccCceEE----- Q lcl|NC_015294. 8 ANNPIDRLREIVGDV---WEP--PMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRG-----MRERTGDIEV----- 72 (158) Q Consensus 8 anNplDrlRil~~D~---~dd--~ml~de~~q~f~~~~~~nerrAai~~lr~iLfq~ar~-----~~Er~G~i~~----- 72 (158) -+.-+.+||.+..|. .|| +.++|.. |....+.|=-..+-=++.||+--.||-+ -.|+||+.+- T Consensus 1 m~ttv~~vkl~a~~L~~~sDDsl~~~I~dA--~~e~~a~gFp~~~~e~a~rYLa~HLat~~~~~v~sE~V~~Lk~~Y~~~ 78 (111) T protein:vir:80 1 MKTDVSKLKLTASSLASVSDDSLQVHIDDS--YLEVQEKGFPEKFEERANRYLAAHLATLANKNVKSEAVGSLKREYYEV 78 (111) T ss_pred CchhHHHHHHhhHhhcCCChHHHHHHHHHH--HHHhhcCCCChhHHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHhhhc Confidence 444599999998887 555 3333332 5556677766677778899998888754 5688886531 Q ss_pred ec------cHHHHHHHHHHHHHHhCcceeeeec Q lcl|NC_015294. 73 YG------AEYFNNYLKALQLILKDPNIAISLA 99 (158) Q Consensus 73 ~~------sd~f~ny~kaLq~i~kd~~~~~v~~ 99 (158) -| +.|=.-|..-++.--+-.+++.|.- T Consensus 79 ~~~~~l~~s~wGq~Y~rL~k~~~~gs~~~~vVv 111 (111) T protein:vir:80 79 KGDSGLLSTEYGQEYARLLKEANGGSGISMVVV 111 (111) T ss_pred ccccccccchhHHHHHHHHHHhcCCccceeeeC Confidence 11 1122233344444333355544332 No 6 >protein:vir:3847 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:1030 # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050153;swissprot:trembl:q9t1f4;genbank:gi:9633045;uniprot:Q9T1F4;genbank:GeneID:1262149 Probab=1.15 E-value=38 Score=11.87 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=21.7 Q ss_pred HHhcCCccccceeeEeccccccccccccCCCcchhhhhhhhhhcc--CC Q lcl|NC_015294. 112 LANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKL--QF 158 (158) Q Consensus 112 ~m~~~nPdnV~r~~~~G~a~~~~~~~~cn~g~~d~~~~~~~~~~~--~~ 158 (158) -|++.+|.+.++.+++|-.-...-.+ -|-|..+ + +..+. -+ T Consensus 1 M~~~~~ps~fn~~i~FGt~~~~~~~~-~ng~~~~-t----Fv~~f~~~~ 43 (118) T protein:vir:38 1 MVRILNPSRQTQRIEFGKESDEPEYD-QNDNPKP-T----ITVLWTTLA 43 (118) T ss_pred CCccccchhceEEEEEeeeccccccC-CCCCccc-E----EEeeeEEEE Confidence 57889999999999999755432111 1222211 1 11111 11 No 7 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=1.11 E-value=48 Score=11.32 Aligned_cols=130 Identities=20% Similarity=0.296 Sum_probs=63.8 Q ss_pred CCcCC----------CCC--cchhhhhhh---------hhccCCCcccccccce---eEEEecc--CCchhHHHHHHHHH Q lcl|NC_015294. 1 MAYTG----------DPA--NNPIDRLRE---------IVGDVWEPPMLSDETY---QWVLDKN--EGNERRAALELMRM 54 (158) Q Consensus 1 M~YTG----------dPa--nNplDrlRi---------l~~D~~dd~ml~de~~---q~f~~~~--~~nerrAai~~lr~ 54 (158) -+|+| +=. -+-+++-|. -+.||-|+-+..|+.- +--++.. .+..+..-.+...+ T Consensus 48 ~~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~~pEvd~Av~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~ 127 (516) T protein:vir:10 48 SSYNALMQQFFGIDNNISGTKDLINTYRQLTNNPEVERAVANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDE 127 (516) T ss_pred ccccceeeeeecccCccccHHHHHHHHHHhhhccchhHHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHH Confidence 11111 100 122445444 3566766666666543 3333333 45666667777777 Q ss_pred H--HHHHHhhhhhccCceEEeccHHHHHHHHHHHHHHhCcceeeeeccccccccchhhHHHhcCCccccceeeEecc--- Q lcl|NC_015294. 55 M--LFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGF--- 129 (158) Q Consensus 55 i--Lfq~ar~~~Er~G~i~~~~sd~f~ny~kaLq~i~kd~~~~~v~~~PYaGGIsk~Dm~m~~~nPdnV~r~~~~G~--- 129 (158) + ||.|-+.+-|..=.-||.|--+| .-|+++|-- || .+++.++|-.|.+.-++=- T Consensus 128 Il~ll~F~~~~~~~fR~WYVDgRi~f-------hKiid~~k~----------GI----~elr~lDPr~i~~vR~i~~~~~ 186 (516) T protein:vir:10 128 ICRLLDASRKLDTLFRRWYIDSRIFF-------HKIMPNPKE----------GI----VELRRLDPRHVEYYREIVTSDV 186 (516) T ss_pred HHHHhccchhhhHHHHhhhhcceEEE-------EEEecCccc----------ce----eeeeeeCCcceeeEEeeecccC Confidence 6 35667777777777777777766 224445443 33 4678888877766544411 Q ss_pred --------ccccccccccCCCcchhhhhhhhhhc-------cCC Q lcl|NC_015294. 130 --------ARREKLYNQCNPGPQDLSMGCDYLGK-------LQF 158 (158) Q Consensus 130 --------a~~~~~~~~cn~g~~d~~~~~~~~~~-------~~~ 158 (158) .+.|-.|..-|++|+ |-|+ +.+ T Consensus 187 ~~~~v~~~~~e~~~Y~~~~~~~~-------~~g~~~~~~~~ikI 223 (516) T protein:vir:10 187 GGTSVVKGYREFFVYTTGNEGYA-------YNGRLFEPNTRIKI 223 (516) T ss_pred cchhhhhceeeeeeeecCcccee-------ccccccCCCCceec Confidence 111112222222222 1111 111 No 8 >protein:vir:4999 Length: 116 # NCBI annotation: putative head-tail joining protein # Family: family:all:1030 # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049973;genbank:gi:9632945;genbank:GeneID:1262108 Probab=1.08 E-value=37 Score=11.93 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=23.5 Q ss_pred HHHhcCCccccceeeEecccccccccc--ccCCCcchhhhhhhhh------------------hccCC Q lcl|NC_015294. 111 MLANDLDPDNVTREFYIGFARREKLYN--QCNPGPQDLSMGCDYL------------------GKLQF 158 (158) Q Consensus 111 m~m~~~nPdnV~r~~~~G~a~~~~~~~--~cn~g~~d~~~~~~~~------------------~~~~~ 158 (158) |.|++.+|-..++.+++|-.-.-+..+ .=-+++-. ...|-+- ..+.| T Consensus 1 M~~~k~~p~~ln~ri~Fg~~~~~~n~~tG~~~~~f~~-~ft~~~~~~t~t~~q~~~~~Gt~~edT~~~ 67 (116) T protein:vir:49 1 MRKVKYLPSDFPYKADFGTYQSTPNKFTGVSVPKFVK-QFTLHYQPHIRTLNQEYLAQQNGEDDTRVI 67 (116) T ss_pred CcccccccccCcEeEEeeeeeeeecCCCCcccceeee-eEEEEEEEeecchheeeeeccccccccEEE Confidence 999999999999999999754432111 00011111 0112111 11111 No 9 >protein:vir:1643 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695064;genbank:gi:23455755;genbank:GeneID:955492 Probab=0.86 E-value=74 Score=10.29 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=39.7 Q ss_pred cccccceeEEEeccCCchhHHHHHHHHHHHHHHH-------------h-hhhhccCc------------eEEeccHHHHH Q lcl|NC_015294. 27 MLSDETYQWVLDKNEGNERRAALELMRMMLFRLT-------------R-GMRERTGD------------IEVYGAEYFNN 80 (158) Q Consensus 27 ml~de~~q~f~~~~~~nerrAai~~lr~iLfq~a-------------r-~~~Er~G~------------i~~~~sd~f~n 80 (158) || ++. +++|+--++. + -.=||||| |..||++.+.+ T Consensus 1 mi-E~~------------------i~~~L~~~l~Vpv~~e~p~~~P~~FV~vErtGG~~~~~~~~~~lAVq~w~~S~~eA 61 (111) T protein:vir:16 1 MI-EII------------------IKNFLDTHLSVSSFLEKKGEMPLSYILFEKTGSSKSNHLLSSTFAFQSYAPSMYEA 61 (111) T ss_pred Ch-HHh------------------HHHHHhhcCCceeEeecCCCCCCceEEEEecCCccccccccceEEEEecchhHHHH Confidence 21 111 1122222210 0 11378887 88999999988 Q ss_pred HHHH--HHHHHhCcceeeeeccccccccchhhHHHhcCCccccceeeEeccccccccc Q lcl|NC_015294. 81 YLKA--LQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLY 136 (158) Q Consensus 81 y~ka--Lq~i~kd~~~~~v~~~PYaGGIsk~Dm~m~~~nPdnV~r~~~~G~a~~~~~~ 136 (158) ..-+ +.+.+.+. .++| +|+++++.-.---||-=+|..-|=...+..-+ T Consensus 62 a~La~~v~~~l~~l-----~~~~---~I~av~~~s~ynf~d~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:16 62 AKLNEQLKEVVERL-----IELN---EISNVSLNSDYNFTDTETKEYRYQAVFDINHY 111 (111) T ss_pred HHHHHHHHHHHhhc-----cccc---cceeeecCCCCcCCCCCCCCceEEEEEEEeeC Confidence 7544 33333222 3555 55555444333336655555555444444333 No 10 >protein:vir:1845 Length: 392 # NCBI annotation: tail sheath protein FI # Family: family:all:115 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052269;genbank:gi:9634076;genbank:GeneID:1262448 Probab=0.84 E-value=58 Score=10.88 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=20.3 Q ss_pred CCcCCCCCcchh-h--------hhhhhhccCCCccccccccee-EEEeccCCchhHHHHHHHHHHHHHHHhhhhhccCce Q lcl|NC_015294. 1 MAYTGDPANNPI-D--------RLREIVGDVWEPPMLSDETYQ-WVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDI 70 (158) Q Consensus 1 M~YTGdPanNpl-D--------rlRil~~D~~dd~ml~de~~q-~f~~~~~~nerrAai~~lr~iLfq~ar~~~Er~G~i 70 (158) -.|.+.|-+..+ . .||.|..+=. |.. ++ ||-.+++-.+..++=++.=-+-++-++-+. ..==- T Consensus 303 ~~~v~e~n~~~~~~~i~~~i~~~L~~l~~~ga----l~g--~~v~~d~~~nt~~~i~~G~~~~~v~~~p~~p~e-~I~~~ 375 (392) T protein:vir:18 303 MWAVDKPITASLIRDIVDGINAKFRELKSNGY----IVD--GECWFDEESNDKETLKAGKLYIDYDYTPVPPLE-SLTLR 375 (392) T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHHHhcCc----ccc--eEEEEecCCCCHHHhhCCeEEEEEEEEecCCcc-eEEEE Confidence 334444433222 1 1111111100 000 11 111111111111100000000001111111 00001 Q ss_pred EEeccHHHHHHHHHHHH Q lcl|NC_015294. 71 EVYGAEYFNNYLKALQL 87 (158) Q Consensus 71 ~~~~sd~f~ny~kaLq~ 87 (158) -.+..+++.++.+.|.+ T Consensus 376 ~~~~~~~~~~~~~~~~~ 392 (392) T protein:vir:18 376 QRITDKYLVNLAESVNS 392 (392) T ss_pred EEEchHHHHHHHHHhcC Confidence 23566666666666665 Done!