Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiFL4A | Genbank acc : NC_013644

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|NC_013644.1_cdsid_YP_003347393.1	HHsearch (proba=100.00%)
Portal	34	lcl\|NC_013644.1_cdsid_YP_003347388.1	HHsearch (proba=100.00%)
TermL	31	lcl\|NC_013644.1_cdsid_YP_003347385.1	Blast (e-value=1e-09)
MTP	45	lcl\|NC_013644.1_cdsid_YP_003347399.1	Blast (e-value=7e-48)
Sheath	NOT FOUND
Ad1	41	lcl\|NC_013644.1_cdsid_YP_003347395.1	HHsearch (proba=100.00%)
Hc1	42	lcl\|NC_013644.1_cdsid_YP_003347396.1	HHsearch (proba=100.00%)
Ne1	43	lcl\|NC_013644.1_cdsid_YP_003347397.1	HHsearch (proba=100.00%)
Tc1	44	lcl\|NC_013644.1_cdsid_YP_003347398.1	HHsearch (proba=99.94%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3969 protein:vir:98871 protein:vir:94528	ul36 BCJA1c phiJL-1	62 % 43 % 40 %
Portal	protein:vir:78083 protein:vir:5961 protein:vir:102330	P35 SPP1 phi CD119	44 % 26 % 24 %
TermL	protein:vir:732 protein:vir:107694 protein:vir:99083	Tuc2009 T1 Qyrzula	18 % 17 % 16 %
MTP	protein:vir:78053 protein:vir:102193 protein:vir:101512	P35 PBI1 PLot	37 % 17 % 17 %
Ad1	protein:vir:78068 protein:vir:96831 protein:vir:97329	P35 EW 52A	26 % 26 % 20 %
Hc1	protein:vir:78048 protein:vir:81177 protein:vir:4459	P35 Geobacillus virus E2 ST64B	35 % 21 % 14 %
Ne1	protein:vir:105916 protein:vir:94108 protein:vir:96829	phiETA3 96 EW	34 % 34 % 32 %
Tc1	protein:vir:78057 protein:vir:744 protein:vir:3618	P35 Tuc2009 TP901-1	23 % 14 % 15 %