Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 39 lcl|Aclame:protein:vir:98871|NCBI_annot:major HHsearch (proba=100.00%)
Portal 34 lcl|Aclame:protein:vir:98883|NCBI_annot:portal|genbank:acc:YP_164413;genbank:gi:56694903;genbank:Gen HHsearch (proba=100.00%)
TermL 33 lcl|Aclame:protein:vir:98922|NCBI_annot:terminase Blast (e-value=0)
MTP 45 lcl|Aclame:protein:vir:98876|NCBI_annot:tail Blast (e-value=7e-88)
Sheath NOT FOUND
Ad1 41 lcl|Aclame:protein:vir:98900|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 42 lcl|Aclame:protein:vir:98924|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 43 lcl|Aclame:protein:vir:98892|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 44 lcl|Aclame:protein:vir:98890|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:98871
protein:vir:94528
protein:vir:4786
BCJA1c
phiJL-1
MM1
100 %
48 %
42 %
Portal protein:vir:98883
protein:vir:9815
protein:vir:3028
BCJA1c
315.4
PhiNIH1.1
100 %
42 %
42 %
TermL protein:vir:98922
protein:vir:4781
protein:vir:37
BCJA1c
MM1
A118
100 %
66 %
51 %
MTP protein:vir:98876
protein:vir:4792
protein:vir:9825
BCJA1c
MM1
315.4
100 %
57 %
54 %
Ad1 protein:vir:98900
protein:vir:80967
protein:vir:4788
BCJA1c
A500
MM1
100 %
35 %
35 %
Hc1 protein:vir:98924
protein:vir:1582
protein:vir:80934
BCJA1c
phig1e
A500
100 %
32 %
27 %
Ne1 protein:vir:98892
protein:vir:1581
protein:vir:9823
BCJA1c
phig1e
315.4
100 %
48 %
42 %
Tc1 protein:vir:98890
protein:vir:1580
protein:vir:9824
BCJA1c
phig1e
315.4
100 %
40 %
30 %