Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BCJA1c | Genbank acc : NC_006557 | Aclame index mge :1568

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|Aclame:protein:vir:98871\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	34	lcl\|Aclame:protein:vir:98883\|NCBI_annot:portal\|genbank:acc:YP_164413;genbank:gi:56694903;genbank:Gen	HHsearch (proba=100.00%)
TermL	33	lcl\|Aclame:protein:vir:98922\|NCBI_annot:terminase	Blast (e-value=0)
MTP	45	lcl\|Aclame:protein:vir:98876\|NCBI_annot:tail	Blast (e-value=7e-88)
Sheath	NOT FOUND
Ad1	41	lcl\|Aclame:protein:vir:98900\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	42	lcl\|Aclame:protein:vir:98924\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	43	lcl\|Aclame:protein:vir:98892\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	44	lcl\|Aclame:protein:vir:98890\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98871 protein:vir:94528 protein:vir:4786	BCJA1c phiJL-1 MM1	100 % 48 % 42 %
Portal	protein:vir:98883 protein:vir:9815 protein:vir:3028	BCJA1c 315.4 PhiNIH1.1	100 % 42 % 42 %
TermL	protein:vir:98922 protein:vir:4781 protein:vir:37	BCJA1c MM1 A118	100 % 66 % 51 %
MTP	protein:vir:98876 protein:vir:4792 protein:vir:9825	BCJA1c MM1 315.4	100 % 57 % 54 %
Ad1	protein:vir:98900 protein:vir:80967 protein:vir:4788	BCJA1c A500 MM1	100 % 35 % 35 %
Hc1	protein:vir:98924 protein:vir:1582 protein:vir:80934	BCJA1c phig1e A500	100 % 32 % 27 %
Ne1	protein:vir:98892 protein:vir:1581 protein:vir:9823	BCJA1c phig1e 315.4	100 % 48 % 42 %
Tc1	protein:vir:98890 protein:vir:1580 protein:vir:9824	BCJA1c phig1e 315.4	100 % 40 % 30 %