BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_013644.1_cdsid_YP_003347399.1 [gene=gp45] [protein=hypothetical protein] [protein_id=YP_003347399.1] [location=27111..28070] (319 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|10808|lcl|protein:vir:78053 Length: 326 # NCBI annotation: gp... 181 7e-48 gi|14832|lcl|protein:vir:4098 Length: 192 # NCBI annotation: maj... 24 2.5 >gi|10808|lcl|protein:vir:78053 Length: 326 # NCBI annotation: gp11 # Family: family:all:3884 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468795;genbank:gi:157325376;genbank:Ge neID:5601815 Length = 326 Score = 181 bits (460), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 183/331 (55%), Gaps = 24/331 (7%) Query: 2 ALPKTGYTKTTADNFVIDSATVFTDFKYDKEKEEFTGIPMGATSGGVEIKTELSYRKVEV 61 L KTGYTK T ++++IDSAT++ + +D FTG +GAT GGVE+ YR V V Sbjct: 3 GLQKTGYTKDTPNHYLIDSATIYKNLVFDPSTNAFTGELLGATDGGVELDITNKYRDVTV 62 Query: 62 DGAYIMDVVGLNVLESATATMKANLIELTAENLRRSLNATMTDATTDEAPAGYKIIKPKR 121 DG YI V+G +L S+ AT K ++ E TAE LR LN A + APAGY +I KR Sbjct: 63 DGTYIQPVLGNKMLSSSIATAKTSIKEFTAETLRIGLNGISALADVNTAPAGYTVITGKR 122 Query: 122 YLEEGDYIPNMAVVGIHNGTKQPIIVALDNGLVKSGLEIKTEDGKEVVIEQEITANASYE 181 Y+EE DYI N+A VG +G+ P+I LDN LV +G IKT+D E V E E ++A ++ Sbjct: 123 YVEETDYIKNIAFVGRLSGSDDPVIAILDNCLVTTGDIIKTKDDDEAVFEVEFESHADFD 182 Query: 182 QLINDEFPFRIYYP---GTSNNPVPVRPEVPKNVQATVEEDGAISVSW-ASDGSTSYVIH 237 L++D+F + IY+P S+ P+ + V TV++ IS +W A + YV Sbjct: 183 TLVSDKFSYNIYFPTARSLSDLPITI---VSVTGTPTVDK---ISFAWDAIPSAMGYVFR 236 Query: 238 YSGANQSEPSQATMMGYSETNNWKL----LKANIPSSKPNDQIF-LYVQGFSE--VGQGS 290 Y +++ ++ + Y+ T + L + + PS+ ++ + V G + VG G+ Sbjct: 237 YGVQGETDGNR---IYYTNTPKFDLTQIIFQGDDPSASMAGKVINVSVAGTHKAYVGVGT 293 Query: 291 NDTEKAAYLNEHSFGSE----WSTAVSVTIP 317 N +KA +++ +E WS V T+P Sbjct: 294 NPIDKAIDAAQNALATEGNLTWSDVVQGTVP 324 >gi|14832|lcl|protein:vir:4098 Length: 192 # NCBI annotation: major tail protein a # Family: family:all:28683 # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510991;swissprot:trembl:q8w5z9;genbank:gi :17488513;uniprot:Q8W5Z9;genbank:GeneID:1260362 Length = 192 Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Query: 143 QPIIVALDNGLVKSGLEIKTEDGKEVVIEQEITANASYEQLINDEFPFRIYY 194 Q ++A N + +GL++ E+G + V E E+ + +I+D + YY Sbjct: 115 QTKLIAFSNCVAATGLKVTVENGADEVAEIEL----EFTAMIDDN--RKCYY 160 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.310 0.128 0.358 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 148,251 Number of Sequences: 514 Number of extensions: 6897 Number of successful extensions: 13 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 4 length of query: 319 length of database: 206,069 effective HSP length: 72 effective length of query: 247 effective length of database: 169,061 effective search space: 41758067 effective search space used: 41758067 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 37 (18.9 bits)