Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : EFAP-1 | Genbank acc : NC_012419

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 24

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	16	lcl\|NC_012419.1_cdsid_YP_002727888.1	HHsearch (proba=100.00%)
Portal	18	lcl\|NC_012419.1_cdsid_YP_002727890.1	HHsearch (proba=100.00%)
TermL	20	lcl\|NC_012419.1_cdsid_YP_002727892.1	Blast (e-value=1e-118)
MTP	10	lcl\|NC_012419.1_cdsid_YP_002727882.1	Blast (e-value=4e-25)
Sheath	NOT FOUND
Ad1	14	lcl\|NC_012419.1_cdsid_YP_002727886.1	HHsearch (proba=99.96%)
Hc1	13	lcl\|NC_012419.1_cdsid_YP_002727885.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_012419.1_cdsid_YP_002727884.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_012419.1_cdsid_YP_002727883.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3870 protein:vir:100884 protein:vir:9704	A2 Lc-Nu 315.2	34 % 34 % 33 %
Portal	protein:vir:81095 protein:vir:79984 protein:vir:98396	tp310-1 tp310-3 phiPVL(108)	28 % 28 % 28 %
TermL	protein:vir:9699 protein:vir:3867 protein:vir:81099	315.2 A2 tp310-1	41 % 39 % 37 %
MTP	protein:vir:78324 protein:vir:98634 protein:vir:9649	B025 phi3396 315.1	31 % 29 % 28 %
Ad1	protein:vir:81159 protein:vir:102083 protein:vir:102863	Geobacillus virus E2 Fah Cherry	33 % 30 % 30 %
Hc1	protein:vir:80342 protein:vir:100244 protein:vir:1436	phi644-2 Bcep176 phiE125	30 % 29 % 28 %
Ne1	protein:vir:3873 protein:vir:81106 protein:vir:79988	A2 tp310-1 tp310-3	28 % 26 % 26 %
Tc1	protein:vir:101303 protein:vir:100675 protein:vir:9514	phiNM3 77 phiN315	21 % 21 % 21 %