Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : B025 | Genbank acc : NC_009812 | Aclame index mge :1850

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 63

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|Aclame:protein:vir:78350\|NCBI_annot:Cps\|genbank:acc:YP_001468644;genbank:gi:157325222;genbank:Ge	HHsearch (proba=100.00%)
Portal	2	lcl\|Aclame:protein:vir:78310\|NCBI_annot:gp3\|genbank:acc:YP_001468642;genbank:gi:157325220;genbank:Ge	HHsearch (proba=100.00%)
TermL	1	lcl\|Aclame:protein:vir:78311\|NCBI_annot:putative	Blast (e-value=0)
MTP	10	lcl\|Aclame:protein:vir:78324\|NCBI_annot:Tsh\|genbank:acc:YP_001468650;genbank:gi:157325228;genbank:Ge	Blast (e-value=1e-111)
Sheath	NOT FOUND
Ad1	6	lcl\|Aclame:protein:vir:78326\|NCBI_annot:gp7\|genbank:acc:YP_001468646;genbank:gi:157325224;genbank:Ge	HHsearch (proba=100.00%)
Hc1	7	lcl\|Aclame:protein:vir:78327\|NCBI_annot:gp8\|genbank:acc:YP_001468647;genbank:gi:157325226;genbank:Ge	HHsearch (proba=100.00%)
Ne1	8	lcl\|Aclame:protein:vir:78335\|NCBI_annot:gp9\|genbank:acc:YP_001468648;genbank:gi:157325225;genbank:Ge	HHsearch (proba=100.00%)
Tc1	9	lcl\|Aclame:protein:vir:78349\|NCBI_annot:gp10\|genbank:acc:YP_001468649;genbank:gi:157325227;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78350 protein:vir:100632 protein:vir:101291	B025 77 phiNM3	100 % 58 % 57 %
Portal	protein:vir:78310 protein:vir:101289 protein:vir:100650	B025 phiNM3 77	100 % 48 % 48 %
TermL	protein:vir:78311 protein:vir:100634 protein:vir:101288	B025 77 phiNM3	100 % 58 % 57 %
MTP	protein:vir:78324 protein:vir:78634 protein:vir:96971	B025 tp310-2 42e	100 % 31 % 31 %
Ad1	protein:vir:78326 protein:vir:101300 protein:vir:100669	B025 phiNM3 77	100 % 43 % 43 %
Hc1	protein:vir:78327 protein:vir:95995 protein:vir:101301	B025 2638A phiNM3	100 % 38 % 38 %
Ne1	protein:vir:78335 protein:vir:78644 protein:vir:96973	B025 tp310-2 42e	100 % 47 % 47 %
Tc1	protein:vir:78349 protein:vir:78648 protein:vir:96972	B025 tp310-2 42e	100 % 33 % 33 %