Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : TP21-L | Genbank acc : NC_011645

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_011645.1_cdsid_YP_002333568.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_011645.1_cdsid_YP_002333564.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_011645.1_cdsid_YP_002333563.1	Blast (e-value=1e-142)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|NC_011645.1_cdsid_YP_002333569.1	HHsearch (proba=96.85%)
Hc1	9	lcl\|NC_011645.1_cdsid_YP_002333570.1	HHsearch (proba=97.16%)
Ne1	10	lcl\|NC_011645.1_cdsid_YP_002333571.2	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_011645.1_cdsid_YP_002333572.1	HHsearch (proba=98.13%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97331 protein:vir:94800 protein:vir:79712	52A 29 LL-H	23 % 23 % 23 %
Portal	protein:vir:94546 protein:vir:106639 protein:vir:106571	phiJL-1 187 Lj965	27 % 26 % 25 %
TermL	protein:vir:9870 protein:vir:96147 protein:vir:97448	315.5 37 92	60 % 57 % 56 %
Ad1	protein:vir:5976 protein:vir:96128 protein:vir:95071	SPP1 37 X2	19 % 24 % 22 %
Hc1	protein:vir:78048 protein:vir:80104 protein:vir:80382	P35 B054 BcepGomr	18 % 20 % 11 %
Ne1	protein:vir:78077 protein:vir:96121 protein:vir:94108	P35 37 96	27 % 23 % 22 %
Tc1	protein:vir:96485 protein:vir:78057 protein:vir:1244	2972 P35 phi ETA	17 % 13 % 13 %