Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 8 lcl|Aclame:protein:vir:95107|NCBI_annot:ORF013|genbank:acc:YP_240822;genbank:gi:66394683;genbank:Gen HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:95113|NCBI_annot:ORF007|genbank:acc:YP_240817;genbank:gi:66394677;genbank:Gen HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:95058|NCBI_annot:ORF009|genbank:acc:YP_240816;genbank:gi:66394679;genbank:Gen Blast (e-value=0)
MTP 16 lcl|Aclame:protein:vir:95108|NCBI_annot:ORF024|genbank:acc:YP_240830;genbank:gi:66394694;genbank:Gen Blast (e-value=1e-107)
Sheath NOT FOUND
Ad1 11 lcl|Aclame:protein:vir:95071|NCBI_annot:ORF050|genbank:acc:YP_240825;genbank:gi:66394717;genbank:Gen HHsearch (proba=100.00%)
Hc1 12 lcl|Aclame:protein:vir:95069|NCBI_annot:ORF046|genbank:acc:YP_240826;genbank:gi:66394713;genbank:Gen HHsearch (proba=100.00%)
Ne1 13 lcl|Aclame:protein:vir:95062|NCBI_annot:ORF044|genbank:acc:YP_240827;genbank:gi:66394711;genbank:Gen HHsearch (proba=100.00%)
Tc1 15 lcl|Aclame:protein:vir:95111|NCBI_annot:ORF030|genbank:acc:YP_240829;genbank:gi:66394699;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95107
protein:vir:9820
protein:vir:3033
X2
315.4
PhiNIH1.1
100 %
36 %
36 %
Portal protein:vir:95113
protein:vir:97447
protein:vir:94498
X2
92
88
100 %
97 %
97 %
TermL protein:vir:95058
protein:vir:97448
protein:vir:94499
X2
92
88
100 %
98 %
98 %
MTP protein:vir:95108
protein:vir:97420
protein:vir:97324
X2
92
52A
100 %
99 %
99 %
Ad1 protein:vir:95071
protein:vir:97430
protein:vir:97329
X2
92
52A
100 %
98 %
98 %
Hc1 protein:vir:95069
protein:vir:97429
protein:vir:94491
X2
92
88
100 %
99 %
99 %
Ne1 protein:vir:95062
protein:vir:97327
protein:vir:95894
X2
52A
71
100 %
99 %
99 %
Tc1 protein:vir:95111
protein:vir:97421
protein:vir:94794
X2
92
29
100 %
99 %
99 %