Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : X2 | Genbank acc : NC_007065 | Aclame index mge :1549

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:95107\|NCBI_annot:ORF013\|genbank:acc:YP_240822;genbank:gi:66394683;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:95113\|NCBI_annot:ORF007\|genbank:acc:YP_240817;genbank:gi:66394677;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:95058\|NCBI_annot:ORF009\|genbank:acc:YP_240816;genbank:gi:66394679;genbank:Gen	Blast (e-value=0)
MTP	16	lcl\|Aclame:protein:vir:95108\|NCBI_annot:ORF024\|genbank:acc:YP_240830;genbank:gi:66394694;genbank:Gen	Blast (e-value=1e-107)
Sheath	NOT FOUND
Ad1	11	lcl\|Aclame:protein:vir:95071\|NCBI_annot:ORF050\|genbank:acc:YP_240825;genbank:gi:66394717;genbank:Gen	HHsearch (proba=100.00%)
Hc1	12	lcl\|Aclame:protein:vir:95069\|NCBI_annot:ORF046\|genbank:acc:YP_240826;genbank:gi:66394713;genbank:Gen	HHsearch (proba=100.00%)
Ne1	13	lcl\|Aclame:protein:vir:95062\|NCBI_annot:ORF044\|genbank:acc:YP_240827;genbank:gi:66394711;genbank:Gen	HHsearch (proba=100.00%)
Tc1	15	lcl\|Aclame:protein:vir:95111\|NCBI_annot:ORF030\|genbank:acc:YP_240829;genbank:gi:66394699;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95107 protein:vir:9820 protein:vir:3033	X2 315.4 PhiNIH1.1	100 % 36 % 36 %
Portal	protein:vir:95113 protein:vir:97447 protein:vir:94498	X2 92 88	100 % 97 % 97 %
TermL	protein:vir:95058 protein:vir:97448 protein:vir:94499	X2 92 88	100 % 98 % 98 %
MTP	protein:vir:95108 protein:vir:97420 protein:vir:97324	X2 92 52A	100 % 99 % 99 %
Ad1	protein:vir:95071 protein:vir:97430 protein:vir:97329	X2 92 52A	100 % 98 % 98 %
Hc1	protein:vir:95069 protein:vir:97429 protein:vir:94491	X2 92 88	100 % 99 % 99 %
Ne1	protein:vir:95062 protein:vir:97327 protein:vir:95894	X2 52A 71	100 % 99 % 99 %
Tc1	protein:vir:95111 protein:vir:97421 protein:vir:94794	X2 92 29	100 % 99 % 99 %