BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:78115|NCBI_annot:hypothetical protein|genbank:acc:YP_001294807;genbank:gi:149882828;genbank:GeneID:5 309143 (257 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|10900|lcl|protein:vir:78115 Length: 257 # NCBI annotation: hy... 513 e-148 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 24 2.3 gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Ter... 23 4.9 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 22 5.3 >gi|10900|lcl|protein:vir:78115 Length: 257 # NCBI annotation: hypothetical protein # Family: family:all:29854 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294807;genbank:gi:149882828;genbank:Ge neID:5309143 Length = 257 Score = 513 bits (1321), Expect = e-148, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MTADAQGNDLSAVGVPITGRAAFAPLDPSNVLTKAQLAARPLVLPAAYRTLGLYKSDGGP 60 MTADAQGNDLSAVGVPITGRAAFAPLDPSNVLTKAQLAARPLVLPAAYRTLGLYKSDGGP Sbjct: 1 MTADAQGNDLSAVGVPITGRAAFAPLDPSNVLTKAQLAARPLVLPAAYRTLGLYKSDGGP 60 Query: 61 QDGRETGDAIEFFQQGYKLAGEGTRTVQYTLAEHNPNVLLLIEGQEPDENGVIEVSSSLP 120 QDGRETGDAIEFFQQGYKLAGEGTRTVQYTLAEHNPNVLLLIEGQEPDENGVIEVSSSLP Sbjct: 61 QDGRETGDAIEFFQQGYKLAGEGTRTVQYTLAEHNPNVLLLIEGQEPDENGVIEVSSSLP 120 Query: 121 DNRFLLFDAIRYRNKTEKRRNGVAFVSAVEPDRAERGSVEGAAVTFTWLEDDLFNGAPFW 180 DNRFLLFDAIRYRNKTEKRRNGVAFVSAVEPDRAERGSVEGAAVTFTWLEDDLFNGAPFW Sbjct: 121 DNRFLLFDAIRYRNKTEKRRNGVAFVSAVEPDRAERGSVEGAAVTFTWLEDDLFNGAPFW 180 Query: 181 QAIVGPDGAPITPTGVTPGTPGAFTPVGATPPANITALRALGPLGQTTAWATGEYVVLGN 240 QAIVGPDGAPITPTGVTPGTPGAFTPVGATPPANITALRALGPLGQTTAWATGEYVVLGN Sbjct: 181 QAIVGPDGAPITPTGVTPGTPGAFTPVGATPPANITALRALGPLGQTTAWATGEYVVLGN 240 Query: 241 AAQVSWDGTDWKTGPAA 257 AAQVSWDGTDWKTGPAA Sbjct: 241 AAQVSWDGTDWKTGPAA 257 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 19/38 (50%) Query: 36 QLAARPLVLPAAYRTLGLYKSDGGPQDGRETGDAIEFF 73 ++A RP A R + GG Q+G ETG AI F Sbjct: 367 RMAPRPYEWKPATRRIMYIDPAGGGQNGDETGVAIVFL 404 >gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Terminase, large subunit # Family: family:all:144 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944884;genbank:gi:38707825;genbank:GeneID :2744038 Length = 533 Score = 22.7 bits (47), Expect = 4.9, Method: Compositional matrix adjust. Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 9/44 (20%) Query: 92 AEHNPNVLLLIEGQEPDENGVIEVSSSLPDNRFLLFDAIRYRNK 135 +E NPN PD +++ S D + + D +R+R++ Sbjct: 358 SEINPN---------PDWTAGVKMGKSKKDGCYYIIDVVRFRDR 392 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 22.3 bits (46), Expect = 5.3, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 17/37 (45%) Query: 38 AARPLVLPAAYRTLGLYKSDGGPQDGRETGDAIEFFQ 74 ARP A R + GG ++G ETG AI F Sbjct: 369 VARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLH 405 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.314 0.134 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,672 Number of Sequences: 514 Number of extensions: 6165 Number of successful extensions: 13 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 6 length of query: 257 length of database: 206,069 effective HSP length: 70 effective length of query: 187 effective length of database: 170,089 effective search space: 31806643 effective search space used: 31806643 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 36 (18.5 bits)