Query lcl|Aclame:protein:vir:78161|NCBI_annot:hypothetical protein|genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Match_columns 355 No_of_seqs 143 out of 389 Neff 8.2 Searched_HMMs 1612 Date Mon Dec 2 03:11:25 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_68 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_68_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:78161 Length: 355 100.0 2E-105 1E-108 594.5 39.2 355 1-355 1-355 (355) 2 protein:vir:108215 Length: 469 100.0 6.8E-89 4.2E-92 503.9 34.2 324 1-342 132-469 (469) 3 protein:vir:95254 Length: 488 100.0 2.2E-86 1.4E-89 490.1 33.1 331 1-341 122-488 (488) 4 protein:vir:79233 Length: 526 100.0 6.9E-84 4.3E-87 476.5 34.2 331 1-355 136-479 (526) 5 protein:vir:103860 Length: 528 100.0 2E-83 1.2E-86 474.0 34.2 331 1-355 136-481 (528) 6 protein:vir:99232 Length: 526 100.0 7E-83 4.3E-86 471.0 33.8 331 1-355 136-479 (526) 7 protein:vir:1986 Length: 512 # 100.0 3E-81 1.9E-84 462.0 33.8 326 1-355 136-469 (512) 8 protein:vir:107880 Length: 491 100.0 6.3E-80 3.9E-83 454.8 33.4 317 1-355 125-451 (491) 9 protein:vir:79063 Length: 491 100.0 1.9E-79 1.2E-82 452.1 33.2 317 1-355 125-450 (491) 10 protein:vir:99853 Length: 488 100.0 2.8E-79 1.8E-82 451.2 28.4 320 1-355 115-439 (488) 11 protein:vir:79511 Length: 448 100.0 1.4E-78 8.4E-82 447.5 31.3 307 1-341 135-448 (448) 12 protein:vir:77981 Length: 448 100.0 2.4E-77 1.5E-80 440.6 30.2 307 1-350 135-448 (448) 13 protein:vir:98816 Length: 446 100.0 1.3E-76 8.1E-80 436.6 29.6 290 1-295 116-446 (446) 14 protein:vir:102727 Length: 945 99.8 2.6E-18 1.6E-21 117.0 26.8 335 1-355 202-569 (945) 15 protein:vir:3843 Length: 397 # 99.7 9.5E-16 5.9E-19 102.9 29.3 294 1-334 99-397 (397) 16 protein:vir:101648 Length: 518 99.7 6E-16 3.7E-19 104.0 28.2 322 1-355 117-483 (518) 17 protein:vir:7853 Length: 518 # 99.7 6.9E-16 4.3E-19 103.7 28.2 324 1-355 117-483 (518) 18 protein:vir:93610 Length: 454 99.7 2.8E-15 1.8E-18 100.3 31.2 314 1-345 121-454 (454) 19 protein:vir:4454 Length: 414 # 99.6 1.5E-15 9.2E-19 101.9 28.9 298 1-330 115-414 (414) 20 protein:vir:1266 Length: 416 # 99.6 1.4E-15 8.5E-19 102.1 28.5 294 1-327 116-416 (416) 21 protein:vir:4337 Length: 434 # 99.6 1.4E-15 8.5E-19 102.1 27.0 299 1-334 128-434 (434) 22 protein:vir:483 Length: 413 # 99.6 2.6E-15 1.6E-18 100.5 28.5 293 1-330 114-413 (413) 23 protein:vir:1380 Length: 422 # 99.6 2.9E-15 1.8E-18 100.3 28.2 292 1-322 119-422 (422) 24 protein:vir:105064 Length: 421 99.6 3.2E-15 2E-18 100.1 27.9 299 1-338 116-421 (421) 25 protein:vir:8418 Length: 409 # 99.6 8.6E-15 5.3E-18 97.7 30.2 293 1-329 112-409 (409) 26 protein:vir:98396 Length: 441 99.6 4.1E-15 2.6E-18 99.5 28.4 291 1-325 135-441 (441) 27 protein:vir:79772 Length: 648 99.6 2.3E-15 1.4E-18 100.8 26.9 337 1-355 161-537 (648) 28 protein:vir:9359 Length: 348 # 99.6 3.9E-15 2.4E-18 99.6 28.1 294 1-328 51-348 (348) 29 protein:vir:96980 Length: 409 99.6 5E-15 3.1E-18 99.0 28.0 294 1-328 112-409 (409) 30 protein:vir:97060 Length: 432 99.6 4.7E-15 2.9E-18 99.1 27.6 294 1-334 129-432 (432) 31 protein:vir:5737 Length: 419 # 99.6 5.4E-15 3.3E-18 98.8 27.9 298 1-341 114-419 (419) 32 protein:vir:9408 Length: 441 # 99.6 7E-15 4.3E-18 98.2 28.3 291 1-325 135-441 (441) 33 protein:vir:79984 Length: 441 99.6 7E-15 4.3E-18 98.2 28.3 291 1-325 135-441 (441) 34 protein:vir:102080 Length: 429 99.6 6.9E-15 4.3E-18 98.2 28.1 302 1-331 118-429 (429) 35 protein:vir:4598 Length: 416 # 99.6 8.5E-15 5.2E-18 97.7 28.4 291 1-325 110-416 (416) 36 protein:vir:81095 Length: 416 99.6 8.5E-15 5.2E-18 97.7 28.4 291 1-325 110-416 (416) 37 protein:vir:81072 Length: 432 99.6 6.6E-15 4.1E-18 98.3 27.3 297 1-334 129-432 (432) 38 protein:vir:2683 Length: 412 # 99.6 1E-14 6.4E-18 97.3 28.4 294 1-328 115-412 (412) 39 protein:vir:10362 Length: 432 99.6 1.2E-14 7.2E-18 97.0 28.4 297 1-334 129-432 (432) 40 protein:vir:102118 Length: 409 99.6 8.2E-15 5.1E-18 97.8 27.6 288 1-323 110-409 (409) 41 protein:vir:81152 Length: 411 99.6 8.9E-15 5.5E-18 97.6 27.4 288 1-323 111-411 (411) 42 protein:vir:80333 Length: 419 99.6 4.8E-15 3E-18 99.1 26.0 298 1-352 114-419 (419) 43 protein:vir:100249 Length: 431 99.6 1.3E-14 8E-18 96.7 28.3 288 1-331 137-431 (431) 44 protein:vir:93943 Length: 409 99.6 1.2E-14 7.1E-18 97.0 27.9 294 1-328 112-409 (409) 45 protein:vir:100150 Length: 437 99.6 1.4E-14 8.6E-18 96.6 28.1 300 1-334 124-437 (437) 46 protein:vir:1431 Length: 419 # 99.6 1.3E-14 8.1E-18 96.7 27.6 298 1-340 114-419 (419) 47 protein:vir:189 Length: 424 # 99.6 9.4E-15 5.8E-18 97.5 26.8 288 1-324 131-424 (424) 48 protein:vir:94426 Length: 409 99.6 2.1E-14 1.3E-17 95.6 28.7 294 1-328 112-409 (409) 49 protein:vir:1884 Length: 424 # 99.6 1.2E-14 7.2E-18 97.0 26.2 286 1-324 131-424 (424) 50 protein:vir:107605 Length: 432 99.6 3.4E-14 2.1E-17 94.4 28.7 302 1-333 121-432 (432) 51 protein:vir:102855 Length: 432 99.6 3.4E-14 2.1E-17 94.4 28.7 302 1-333 121-432 (432) 52 protein:vir:105002 Length: 432 99.6 3.4E-14 2.1E-17 94.4 28.7 302 1-333 121-432 (432) 53 protein:vir:4509 Length: 424 # 99.6 3.8E-14 2.3E-17 94.2 28.8 288 1-332 129-424 (424) 54 protein:vir:1326 Length: 457 # 99.6 5.1E-14 3.2E-17 93.4 28.8 311 1-347 120-457 (457) 55 protein:vir:6240 Length: 457 # 99.5 5.8E-14 3.6E-17 93.2 28.8 311 1-347 120-457 (457) 56 protein:vir:3868 Length: 417 # 99.5 7.9E-14 4.9E-17 92.4 29.0 297 1-334 107-417 (417) 57 protein:vir:95599 Length: 563 99.5 1.4E-13 8.8E-17 91.0 29.6 326 1-355 182-550 (563) 58 protein:vir:99312 Length: 563 99.5 1.4E-13 8.8E-17 91.0 29.6 326 1-355 182-550 (563) 59 protein:vir:81218 Length: 423 99.5 1.1E-13 6.8E-17 91.6 28.1 300 1-321 115-423 (423) 60 protein:vir:96579 Length: 576 99.5 2.1E-13 1.3E-16 90.1 28.7 325 1-355 181-542 (576) 61 protein:vir:9702 Length: 406 # 99.5 4E-13 2.5E-16 88.6 28.8 297 1-330 104-406 (406) 62 protein:vir:80796 Length: 574 99.5 3.4E-13 2.1E-16 88.9 28.4 325 1-355 182-553 (574) 63 protein:vir:7407 Length: 392 # 99.5 2.1E-13 1.3E-16 90.1 27.0 278 1-328 110-392 (392) 64 protein:vir:3989 Length: 392 # 99.5 2.7E-13 1.7E-16 89.5 26.9 278 1-328 110-392 (392) 65 protein:vir:1023 Length: 392 # 99.5 2.7E-13 1.7E-16 89.5 26.9 278 1-328 110-392 (392) 66 protein:vir:63755 Length: 547 99.5 2.4E-13 1.5E-16 89.7 26.5 323 1-355 174-545 (547) 67 protein:vir:80644 Length: 551 99.5 4E-13 2.5E-16 88.5 27.2 325 1-355 178-549 (551) 68 protein:vir:4952 Length: 386 # 99.4 2E-12 1.3E-15 84.7 28.3 278 1-327 104-386 (386) 69 protein:vir:99452 Length: 651 99.4 1.7E-12 1.1E-15 85.0 27.7 328 1-355 207-567 (651) 70 protein:vir:8317 Length: 409 # 99.4 5.7E-13 3.6E-16 87.7 24.8 264 1-303 140-409 (409) 71 protein:vir:101647 Length: 460 99.4 2.8E-12 1.7E-15 83.9 28.0 298 1-333 145-460 (460) 72 protein:vir:100187 Length: 385 99.4 1.7E-12 1E-15 85.1 26.4 273 1-326 103-385 (385) 73 protein:vir:100691 Length: 535 99.4 3E-12 1.9E-15 83.8 27.0 314 1-343 170-535 (535) 74 protein:vir:94666 Length: 723 99.4 1.7E-12 1.1E-15 85.1 24.2 325 1-355 96-477 (723) 75 protein:vir:4854 Length: 386 # 99.4 1E-11 6.5E-15 80.8 28.3 281 1-327 104-386 (386) 76 protein:vir:100882 Length: 383 99.4 5.1E-12 3.2E-15 82.5 26.3 272 1-317 103-383 (383) 77 protein:vir:4995 Length: 384 # 99.4 2.2E-12 1.4E-15 84.5 24.2 274 1-299 104-384 (384) 78 protein:vir:960 Length: 413 # 99.3 9.1E-12 5.6E-15 81.1 26.5 279 1-323 128-413 (413) 79 protein:vir:4194 Length: 540 # 99.3 2E-11 1.2E-14 79.3 28.0 331 1-355 108-479 (540) 80 protein:vir:3153 Length: 467 # 99.3 2.4E-11 1.5E-14 78.8 28.1 326 1-355 89-467 (467) 81 protein:vir:4156 Length: 542 # 99.3 4.8E-11 3E-14 77.2 28.8 333 1-355 110-481 (542) 82 protein:vir:95378 Length: 406 99.3 9.7E-11 6E-14 75.5 28.6 284 1-326 115-406 (406) 83 protein:vir:4828 Length: 382 # 99.2 1.4E-10 8.9E-14 74.6 27.2 280 1-327 101-382 (382) 84 protein:vir:4089 Length: 395 # 99.2 1.4E-10 8.5E-14 74.7 26.3 283 1-325 103-395 (395) 85 protein:vir:6210 Length: 394 # 99.2 9.4E-11 5.8E-14 75.6 25.1 291 1-326 94-394 (394) 86 protein:vir:104259 Length: 403 99.2 5.4E-10 3.4E-13 71.4 29.2 284 1-328 98-403 (403) 87 protein:vir:100650 Length: 395 99.2 2.8E-10 1.7E-13 73.0 27.4 288 1-328 96-395 (395) 88 protein:vir:9507 Length: 395 # 99.2 2.8E-10 1.7E-13 73.0 27.4 288 1-328 96-395 (395) 89 protein:vir:101289 Length: 395 99.2 2.8E-10 1.7E-13 73.0 27.4 288 1-328 96-395 (395) 90 protein:vir:80134 Length: 403 99.2 1.3E-10 7.9E-14 74.8 25.5 282 1-331 112-403 (403) 91 protein:vir:95965 Length: 385 99.2 1.5E-10 9.4E-14 74.4 24.8 279 1-326 97-385 (385) 92 protein:vir:5249 Length: 437 # 99.1 1E-09 6.5E-13 69.8 26.4 310 1-329 102-437 (437) 93 protein:vir:8100 Length: 466 # 99.1 1.5E-09 9.3E-13 69.0 26.9 293 1-326 140-466 (466) 94 protein:vir:1082 Length: 359 # 99.0 1.2E-09 7.2E-13 69.6 25.0 255 1-292 98-359 (359) 95 protein:vir:80040 Length: 461 99.0 3.7E-09 2.3E-12 66.8 27.7 298 1-316 115-461 (461) 96 protein:vir:78641 Length: 278 99.0 5.4E-10 3.4E-13 71.4 23.0 227 1-254 51-278 (278) 97 protein:vir:78310 Length: 376 99.0 2.1E-09 1.3E-12 68.1 25.2 270 1-316 97-376 (376) 98 protein:vir:94002 Length: 378 99.0 3E-09 1.8E-12 67.3 24.4 277 1-326 94-378 (378) 99 protein:vir:1661 Length: 378 # 98.9 6.6E-09 4.1E-12 65.4 24.6 277 1-326 93-378 (378) 100 protein:vir:98643 Length: 395 98.9 2.5E-08 1.5E-11 62.3 26.2 283 1-324 101-395 (395) 101 protein:vir:107742 Length: 537 98.8 3.2E-08 2E-11 61.7 26.8 312 1-342 163-537 (537) 102 protein:vir:93867 Length: 378 98.8 2.6E-08 1.6E-11 62.2 24.4 276 1-326 94-378 (378) 103 protein:vir:96068 Length: 765 98.8 4.6E-08 2.9E-11 60.8 24.3 327 1-355 181-578 (765) 104 protein:vir:94049 Length: 532 98.7 1.1E-07 6.9E-11 58.7 25.2 322 1-355 156-530 (532) 105 protein:vir:9641 Length: 395 # 98.7 1.2E-07 7.6E-11 58.5 25.0 281 1-324 99-395 (395) 106 protein:vir:94869 Length: 378 98.7 1.4E-07 8.4E-11 58.2 25.3 275 1-326 93-378 (378) 107 protein:vir:79647 Length: 435 98.6 2E-07 1.2E-10 57.4 24.2 293 1-317 106-435 (435) 108 protein:vir:858 Length: 378 # 98.6 2E-07 1.2E-10 57.3 24.8 274 1-326 93-378 (378) 109 protein:vir:5961 Length: 503 # 98.5 3.5E-07 2.2E-10 56.0 22.0 307 1-340 143-503 (503) 110 protein:vir:94956 Length: 452 98.5 4.5E-07 2.8E-10 55.4 26.0 282 1-319 149-452 (452) 111 protein:vir:95113 Length: 474 98.5 5E-07 3.1E-10 55.1 24.4 289 1-329 140-474 (474) 112 protein:vir:79538 Length: 502 98.5 5.1E-07 3.2E-10 55.1 26.6 303 1-332 147-502 (502) 113 protein:vir:3420 Length: 533 # 98.4 8.6E-07 5.3E-10 53.8 22.0 310 1-336 152-533 (533) 114 protein:vir:104338 Length: 422 98.4 9.3E-07 5.7E-10 53.7 24.8 291 1-332 94-422 (422) 115 protein:vir:107662 Length: 427 98.4 9.9E-07 6.1E-10 53.5 25.2 302 1-332 95-427 (427) 116 protein:vir:95899 Length: 474 98.4 1.1E-06 6.9E-10 53.2 23.0 294 1-334 140-474 (474) 117 protein:vir:96266 Length: 474 98.4 1.1E-06 6.9E-10 53.2 23.0 294 1-334 140-474 (474) 118 protein:vir:78749 Length: 337 98.3 1.3E-06 8.2E-10 52.8 20.8 223 1-257 104-337 (337) 119 protein:vir:97336 Length: 492 98.3 1.8E-06 1.1E-09 52.1 25.3 295 1-334 157-492 (492) 120 protein:vir:100328 Length: 346 98.2 1.2E-06 7.4E-10 53.1 19.6 225 1-261 112-346 (346) 121 protein:vir:267 Length: 348 # 98.2 2.3E-06 1.4E-09 51.5 21.8 229 1-263 109-348 (348) 122 protein:vir:105292 Length: 478 98.2 2.5E-06 1.5E-09 51.3 25.7 289 1-334 139-478 (478) 123 protein:vir:1150 Length: 350 # 98.2 3.1E-06 1.9E-09 50.8 20.6 220 1-256 120-350 (350) 124 protein:vir:93747 Length: 472 98.2 3.3E-06 2.1E-09 50.6 24.8 295 1-334 137-472 (472) 125 protein:vir:105154 Length: 525 98.2 1.1E-07 6.6E-11 58.8 12.0 313 1-342 171-525 (525) 126 protein:vir:106571 Length: 499 98.2 3.4E-06 2.1E-09 50.6 24.3 302 1-346 162-499 (499) 127 protein:vir:97447 Length: 474 98.2 3.5E-06 2.2E-09 50.5 25.7 289 1-334 140-474 (474) 128 protein:vir:94498 Length: 474 98.2 3.5E-06 2.2E-09 50.5 25.7 289 1-334 140-474 (474) 129 protein:vir:99781 Length: 511 98.1 3.6E-06 2.2E-09 50.4 19.6 311 1-334 150-511 (511) 130 protein:vir:3743 Length: 345 # 98.1 3.1E-06 1.9E-09 50.8 19.2 227 1-258 107-345 (345) 131 protein:vir:6382 Length: 553 # 98.1 4.4E-06 2.7E-09 49.9 23.6 315 1-338 156-553 (553) 132 protein:vir:97171 Length: 512 98.1 5E-06 3.1E-09 49.7 21.1 312 1-338 150-512 (512) 133 protein:vir:107112 Length: 478 98.1 5.5E-06 3.4E-09 49.4 25.8 292 1-331 139-478 (478) 134 protein:vir:389 Length: 530 # 98.0 6.3E-06 3.9E-09 49.1 25.7 310 1-325 149-530 (530) 135 protein:vir:98567 Length: 340 98.0 7E-06 4.3E-09 48.8 20.5 222 1-256 109-340 (340) 136 protein:vir:79150 Length: 368 98.0 7.1E-06 4.4E-09 48.8 20.5 231 1-269 125-368 (368) 137 protein:vir:79043 Length: 479 98.0 7.2E-06 4.5E-09 48.8 24.8 285 1-327 136-479 (479) 138 protein:vir:98444 Length: 434 98.0 7.4E-06 4.6E-09 48.7 24.3 306 1-355 75-434 (434) 139 protein:vir:103971 Length: 376 98.0 7.5E-06 4.7E-09 48.7 20.6 222 1-258 142-376 (376) 140 protein:vir:96738 Length: 505 98.0 7.5E-06 4.7E-09 48.7 25.3 308 1-332 155-505 (505) 141 protein:vir:96179 Length: 468 98.0 7.5E-06 4.7E-09 48.7 23.3 279 1-328 139-468 (468) 142 protein:vir:94805 Length: 492 98.0 8.3E-06 5.1E-09 48.4 25.9 295 1-336 157-492 (492) 143 protein:vir:3780 Length: 345 # 98.0 8.4E-06 5.2E-09 48.4 22.2 228 1-258 107-345 (345) 144 protein:vir:80453 Length: 535 98.0 8.8E-06 5.4E-09 48.3 24.7 303 1-332 203-535 (535) 145 protein:vir:1236 Length: 483 # 98.0 9.3E-06 5.8E-09 48.2 24.7 295 1-334 148-483 (483) 146 protein:vir:105889 Length: 474 97.9 9.7E-06 6E-09 48.1 23.9 284 1-334 144-474 (474) 147 protein:vir:94101 Length: 474 97.9 9.7E-06 6E-09 48.1 23.9 284 1-334 144-474 (474) 148 protein:vir:96839 Length: 474 97.9 1E-05 6.2E-09 48.0 24.0 285 1-332 139-474 (474) 149 protein:vir:105819 Length: 456 97.9 1.1E-05 7E-09 47.7 20.9 300 1-329 116-456 (456) 150 protein:vir:102602 Length: 456 97.9 1.1E-05 7E-09 47.7 20.9 300 1-329 116-456 (456) 151 protein:vir:5691 Length: 344 # 97.9 1.3E-05 7.9E-09 47.4 21.1 223 1-257 112-344 (344) 152 protein:vir:96240 Length: 511 97.9 1.3E-05 7.9E-09 47.4 20.9 311 1-334 150-511 (511) 153 protein:vir:78805 Length: 511 97.9 1.3E-05 8E-09 47.4 20.6 311 1-338 150-511 (511) 154 protein:vir:96366 Length: 511 97.9 1.3E-05 8E-09 47.4 20.6 311 1-338 150-511 (511) 155 protein:vir:98853 Length: 219 97.9 1.4E-05 8.9E-09 47.1 19.1 207 29-258 1-219 (219) 156 protein:vir:99522 Length: 470 97.8 1.7E-05 1.1E-08 46.7 23.3 293 1-333 133-470 (470) 157 protein:vir:6058 Length: 344 # 97.8 1.9E-05 1.2E-08 46.5 20.6 223 1-257 112-344 (344) 158 protein:vir:103951 Length: 511 97.8 2E-05 1.2E-08 46.3 21.1 310 1-334 150-511 (511) 159 protein:vir:95542 Length: 548 97.8 2.1E-05 1.3E-08 46.2 21.8 326 1-355 147-541 (548) 160 protein:vir:2013 Length: 344 # 97.7 2.3E-05 1.5E-08 46.0 20.3 223 1-257 112-344 (344) 161 protein:vir:9306 Length: 511 # 97.7 2.5E-05 1.6E-08 45.8 20.7 307 1-338 150-511 (511) 162 protein:vir:79207 Length: 351 97.7 2.8E-05 1.7E-08 45.5 19.6 222 1-258 117-351 (351) 163 protein:vir:95014 Length: 491 97.6 3.4E-05 2.1E-08 45.1 22.8 299 1-332 173-491 (491) 164 protein:vir:99072 Length: 479 97.6 3.4E-05 2.1E-08 45.1 20.0 315 1-347 123-479 (479) 165 protein:vir:3964 Length: 453 # 97.6 3.8E-05 2.4E-08 44.8 24.2 295 1-329 124-453 (453) 166 protein:vir:10321 Length: 495 97.6 4.1E-05 2.5E-08 44.6 25.0 302 1-334 134-495 (495) 167 protein:vir:95806 Length: 440 97.6 4.2E-05 2.6E-08 44.6 24.6 292 1-331 106-440 (440) 168 protein:vir:78537 Length: 480 97.6 4.2E-05 2.6E-08 44.6 22.0 317 1-342 138-480 (480) 169 protein:vir:102239 Length: 527 97.6 4.2E-05 2.6E-08 44.6 19.0 303 1-336 167-527 (527) 170 protein:vir:101494 Length: 527 97.6 4.5E-05 2.8E-08 44.4 19.0 303 1-336 167-527 (527) 171 protein:vir:78191 Length: 351 97.6 4.6E-05 2.9E-08 44.3 20.0 222 1-258 117-351 (351) 172 protein:vir:95149 Length: 501 97.6 4.6E-05 2.9E-08 44.3 25.6 295 1-328 158-501 (501) 173 protein:vir:4782 Length: 522 # 97.5 4.9E-05 3E-08 44.2 19.9 308 1-335 162-522 (522) 174 protein:vir:96494 Length: 501 97.5 4.9E-05 3E-08 44.2 22.1 306 1-336 153-501 (501) 175 protein:vir:105461 Length: 470 97.5 4.9E-05 3.1E-08 44.2 23.6 280 1-326 122-470 (470) 176 protein:vir:99563 Length: 862 97.5 6.2E-05 3.8E-08 43.7 26.2 324 1-355 209-610 (862) 177 protein:vir:78227 Length: 480 97.4 6.8E-05 4.2E-08 43.4 21.3 319 1-344 138-480 (480) 178 protein:vir:2341 Length: 488 # 97.4 8.7E-05 5.4E-08 42.8 22.9 303 1-335 168-488 (488) 179 protein:vir:733 Length: 453 # 97.3 9.4E-05 5.8E-08 42.7 21.5 294 1-323 124-453 (453) 180 protein:vir:4698 Length: 251 # 97.2 5.6E-05 3.5E-08 43.9 14.5 140 1-157 110-251 (251) 181 protein:vir:7768 Length: 484 # 97.2 0.00012 7.6E-08 42.0 21.7 304 1-337 162-484 (484) 182 protein:vir:78083 Length: 537 97.2 0.00014 8.5E-08 41.8 29.8 294 1-334 133-537 (537) 183 protein:vir:2427 Length: 485 # 97.1 0.00016 9.9E-08 41.4 23.6 302 1-334 150-485 (485) 184 protein:vir:106639 Length: 481 97.1 0.00016 9.9E-08 41.4 24.6 299 1-335 142-481 (481) 185 protein:vir:3028 Length: 500 # 97.0 0.0002 1.3E-07 40.8 21.8 297 1-322 152-500 (500) 186 protein:vir:9815 Length: 500 # 97.0 0.0002 1.3E-07 40.8 21.8 297 1-322 152-500 (500) 187 protein:vir:2732 Length: 501 # 97.0 0.00021 1.3E-07 40.8 25.2 302 1-331 153-501 (501) 188 protein:vir:7987 Length: 456 # 97.0 0.00021 1.3E-07 40.8 20.8 296 1-318 116-456 (456) 189 protein:vir:2500 Length: 501 # 97.0 0.00023 1.5E-07 40.5 22.7 299 1-336 156-501 (501) 190 protein:vir:97265 Length: 513 96.9 0.00024 1.5E-07 40.4 28.6 300 1-337 180-513 (513) 191 protein:vir:4898 Length: 502 # 96.9 0.00025 1.5E-07 40.3 24.8 308 1-337 154-502 (502) 192 protein:vir:4223 Length: 486 # 96.9 0.00026 1.6E-07 40.3 22.1 305 1-337 139-486 (486) 193 protein:vir:78393 Length: 489 96.9 0.00027 1.7E-07 40.1 23.5 296 1-332 173-489 (489) 194 protein:vir:102950 Length: 471 96.7 0.00038 2.4E-07 39.3 25.6 283 1-328 126-471 (471) 195 protein:vir:105782 Length: 449 96.6 0.00046 2.9E-07 38.9 23.9 292 1-330 125-449 (449) 196 protein:vir:94546 Length: 506 96.6 0.00047 2.9E-07 38.8 19.7 313 1-336 133-506 (506) 197 protein:vir:99916 Length: 504 96.6 0.00048 3E-07 38.8 25.4 331 1-355 128-504 (504) 198 protein:vir:1587 Length: 508 # 96.6 0.00051 3.2E-07 38.6 25.2 295 1-324 164-508 (508) 199 protein:vir:9751 Length: 422 # 96.5 0.00055 3.4E-07 38.4 22.3 277 1-305 104-422 (422) 200 protein:vir:102330 Length: 451 96.4 0.00063 3.9E-07 38.1 22.6 280 1-322 115-451 (451) 201 protein:vir:3609 Length: 452 # 96.2 0.00083 5.1E-07 37.5 24.8 289 1-334 124-452 (452) 202 protein:vir:78907 Length: 518 96.2 0.00088 5.5E-07 37.3 20.3 297 1-323 166-518 (518) 203 protein:vir:9871 Length: 429 # 96.1 0.00096 6E-07 37.1 23.9 282 1-328 108-429 (429) 204 protein:vir:9922 Length: 489 # 96.1 0.001 6.4E-07 37.0 20.3 308 1-333 150-489 (489) 205 protein:vir:8184 Length: 474 # 96.1 0.0011 6.5E-07 36.9 21.0 294 1-320 122-474 (474) 206 protein:vir:1538 Length: 535 # 96.1 0.0011 6.6E-07 36.9 17.2 296 1-348 213-535 (535) 207 protein:vir:104082 Length: 485 96.1 0.0011 6.6E-07 36.9 25.7 305 1-338 150-485 (485) 208 protein:vir:80680 Length: 441 96.0 0.0011 6.9E-07 36.8 23.0 291 1-346 107-441 (441) 209 protein:vir:94709 Length: 522 95.5 0.0019 1.2E-06 35.5 16.8 299 1-355 175-518 (522) 210 protein:vir:94742 Length: 409 95.3 0.0023 1.4E-06 35.1 25.1 261 1-292 104-409 (409) 211 protein:vir:80165 Length: 651 95.1 0.0028 1.7E-06 34.6 21.8 304 1-355 284-633 (651) 212 protein:vir:3361 Length: 535 # 94.9 0.0032 2E-06 34.3 17.3 296 1-347 213-535 (535) 213 protein:vir:1634 Length: 409 # 94.7 0.0036 2.2E-06 34.0 25.6 262 1-292 104-409 (409) 214 protein:vir:94599 Length: 641 94.5 0.0044 2.7E-06 33.5 19.6 318 1-355 233-622 (641) 215 protein:vir:9568 Length: 410 # 94.0 0.0056 3.5E-06 32.9 24.4 277 1-307 92-410 (410) 216 protein:vir:95315 Length: 559 93.8 0.0062 3.9E-06 32.7 16.3 312 1-350 210-559 (559) 217 protein:vir:94572 Length: 535 93.7 0.0068 4.2E-06 32.5 16.3 296 1-354 213-535 (535) 218 protein:vir:10447 Length: 536 92.9 0.0094 5.9E-06 31.7 14.9 292 1-355 213-529 (536) 219 protein:vir:572 Length: 506 # 92.8 0.0016 1E-06 35.9 6.9 313 1-344 153-506 (506) 220 protein:vir:38 Length: 496 # N 92.6 0.011 6.8E-06 31.3 23.6 288 1-326 132-496 (496) 221 protein:vir:96988 Length: 516 92.5 0.011 6.8E-06 31.3 16.9 290 1-330 173-516 (516) 222 protein:vir:99672 Length: 532 92.3 0.012 7.3E-06 31.2 14.5 304 1-355 180-531 (532) 223 protein:vir:102668 Length: 547 92.2 0.013 7.8E-06 31.0 17.5 291 1-355 214-541 (547) 224 protein:vir:96783 Length: 488 92.1 0.013 7.9E-06 31.0 24.2 276 1-309 199-488 (488) 225 protein:vir:98883 Length: 517 91.4 0.016 9.8E-06 30.5 24.4 302 1-334 173-517 (517) 226 protein:vir:8883 Length: 543 # 91.4 0.016 9.9E-06 30.4 16.0 298 1-355 215-540 (543) 227 protein:vir:80959 Length: 499 91.2 0.017 1E-05 30.3 24.4 294 1-326 154-499 (499) 228 protein:vir:7321 Length: 556 # 91.0 0.018 1.1E-05 30.1 13.9 309 1-350 210-556 (556) 229 protein:vir:7017 Length: 515 # 89.8 0.024 1.5E-05 29.5 17.7 284 1-355 172-507 (515) 230 protein:vir:2198 Length: 536 # 89.6 0.025 1.6E-05 29.3 19.1 292 1-355 213-529 (536) 231 protein:vir:98506 Length: 555 88.4 0.032 2E-05 28.8 15.6 307 1-355 211-552 (555) 232 protein:vir:107404 Length: 555 88.4 0.032 2E-05 28.8 15.6 307 1-355 211-552 (555) 233 protein:vir:107822 Length: 555 88.4 0.032 2E-05 28.8 15.6 307 1-355 211-552 (555) 234 protein:vir:103219 Length: 201 88.0 0.035 2.2E-05 28.6 13.1 191 84-331 1-201 (201) 235 protein:vir:103330 Length: 517 87.6 0.038 2.3E-05 28.4 20.3 293 1-355 170-515 (517) 236 protein:vir:5839 Length: 533 # 86.3 0.047 2.9E-05 27.9 20.3 315 1-355 142-521 (533) 237 protein:vir:100039 Length: 522 84.8 0.058 3.6E-05 27.4 17.9 309 1-355 162-520 (522) 238 protein:vir:80211 Length: 514 81.9 0.082 5.1E-05 26.5 17.4 290 1-355 165-510 (514) 239 protein:vir:106716 Length: 698 80.8 0.092 5.7E-05 26.3 23.0 326 1-355 199-606 (698) 240 protein:vir:3648 Length: 695 # 77.4 0.12 7.8E-05 25.5 22.8 328 1-355 199-603 (695) 241 protein:vir:105641 Length: 516 76.9 0.13 8.1E-05 25.4 16.7 284 1-355 173-507 (516) 242 protein:vir:101541 Length: 694 76.3 0.14 8.5E-05 25.3 22.8 328 1-355 198-602 (694) 243 protein:vir:79703 Length: 505 75.7 0.14 8.9E-05 25.2 22.8 292 1-322 163-505 (505) 244 protein:vir:78589 Length: 695 74.6 0.16 9.7E-05 25.0 21.7 327 1-355 199-586 (695) 245 protein:vir:78696 Length: 542 74.1 0.16 0.0001 24.9 20.1 292 1-355 205-535 (542) 246 protein:vir:103765 Length: 549 61.8 0.35 0.00022 23.1 20.6 298 1-350 217-549 (549) 247 protein:vir:1785 Length: 555 # 45.4 0.77 0.00048 21.2 16.8 310 1-355 201-551 (555) 248 protein:vir:78942 Length: 510 30.6 1.6 0.00097 19.5 23.1 295 1-355 163-509 (510) 249 protein:vir:7430 Length: 563 # 28.5 1.7 0.0011 19.3 15.8 314 1-353 165-563 (563) 250 protein:vir:6322 Length: 510 # 27.3 1.9 0.0012 19.1 23.4 297 1-355 163-509 (510) 251 protein:vir:5665 Length: 511 # 24.0 2.2 0.0014 18.7 16.6 299 1-317 146-511 (511) No 1 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=100.00 E-value=2.1e-105 Score=594.45 Aligned_cols=355 Identities=100% Similarity=1.534 Sum_probs=342.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ||||||++++|+|.|++|.+|||++|+||.++++++++.+++.+..|.++++||++|||+|+|+++++||||.|||+.|| T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 99999999999999999999999999999999999999999999889899999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) |+|+||++++++|+.|+||||+|||+++++|++.+...|.+..+++.++.++.+.++++++++|+++++|+|.|++|+|+ T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ 160 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcceeEeecCCceEEEe Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGP 240 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~ 240 (355) +++|+..+|.++|+|||++|||+|||||||++++++|||||+|+||++|+++++++|+++|+++||++||++||++||++ T Consensus 161 ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~~lN~~~ 240 (355) T protein:vir:78 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGP 240 (355) T ss_pred ecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 99998899999999999999999999999998877889999999999999999999999999999999999999999999 Q ss_pred cccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccc Q lcl|Aclame:pro 241 EEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQG 320 (355) Q Consensus 241 ~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (355) ..++|+|+|+.++++++++++++++|+++|++++++.+++|++++||||+|.++++...+..++.+++.+.+++++..++ T Consensus 241 ~~~~P~~~~~~~~~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (355) T protein:vir:78 241 EEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQG 320 (355) T ss_pred CCCCCEEEecCcChhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCccccccccccccccCCcccc Confidence 99999999998878888999999999999999998888999999999999999988888888888888888999999888 Q ss_pred cCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 321 AALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) ++.+++.+.++++.....++.++.++++++|++|| T Consensus 321 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) T protein:vir:78 321 AALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) T ss_pred ccccccCCCCCChhhhHHHHHHhhccccCCCCCCC Confidence 99999999999999999999999999999999999 No 2 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=100.00 E-value=6.8e-89 Score=503.94 Aligned_cols=324 Identities=39% Similarity=0.641 Sum_probs=267.9 Q ss_pred CeEEEEeee----CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCC----------CCCceeeCCccEEEEecCCC Q lcl|Aclame:pro 1 MFEQVYRIE----NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVF----------GKATVRIPVDRLVVFVNERE 66 (355) Q Consensus 1 V~Eivw~~~----~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~----------g~~~~~ip~~k~i~~~~~~~ 66 (355) |+||||+.+ +|+|.|.+|.+|||++|.+|.++++++++.++|.... +..+++||++|||+|+|+++ T Consensus 132 ~~Eivw~~~~~~~dG~~~~~~l~~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~ 211 (469) T protein:vir:10 132 VFEQVYRPRNQSPDGRFWLRKLAPRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKR 211 (469) T ss_pred eeeeeeecccccCCCceeeeeeeecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCC Confidence 999999854 6899999999999999999999999999998885442 33568899999999999999 Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 67 GANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA 146 (355) Q Consensus 67 ~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~ 146 (355) ++||||.|||+.|||+|+||++++++|+.|+||||+|+|+++ |++++++ +.+++|.++++++++|++ T Consensus 212 ~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~EryG~P~~vgk--y~~~a~~-----------~ek~~l~~a~~~~~~g~~ 278 (469) T protein:vir:10 212 PGQWQGKSILRSAYKHWLLKDKLLRIEAATAERNGMGIPVGT--ASSATDE-----------DEVRKMAALARSVRGGIN 278 (469) T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcceEEe--cCCCCCH-----------HHHHHHHHHHHHHhcCCc Confidence 999999999999999999999999999999999977666655 4443322 235678889999999999 Q ss_pred eeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 AGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQ 226 (355) Q Consensus 147 ~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln 226 (355) +++|+|.|++|+|++++|+..+|.++|+|||++|||+|||||||+++ +|||||+|+||++++++++++|+++|+++|| T Consensus 279 a~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~tlTs~~--~gGS~a~~~vh~ev~~d~~~sDa~~i~~tln 356 (469) T protein:vir:10 279 AGVGLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSGLAHFLNLDG--KGGSYALASVLEDPFTQAVHAYATSICRIAN 356 (469) T ss_pred eEEEccCCceEEEeecCCCchHHHHHHHHHHHHHHHHHhcccccccC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999998999999999999999999999999863 4699999999999999999999999999999 Q ss_pred HHHHHHHHHhCCCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccC Q lcl|Aclame:pro 227 QHVVEDLVDQNWGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAA 306 (355) Q Consensus 227 ~~li~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~ 306 (355) ++||++|+++||++..++|+|+|++.+++++.+++++++|+++|+++.+++.++|++++||||.+.+++++..+..+.+. T Consensus 357 ~~li~~l~~lN~g~~~~~P~~~~~~~e~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~ 436 (469) T protein:vir:10 357 QHIIEDLVDINFGVDTPAPVLTFDPIGSRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAV 436 (469) T ss_pred HHHHHHHHHhcCCCCCCccEEEecCCCCcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhcccC Confidence 99999999999999999999999988888889999999999999999888899999999999999888776654443332 Q ss_pred CccccccccccccccCCcccCccccchhHHHHHhHh Q lcl|Aclame:pro 307 GRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRR 342 (355) Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (355) ++.. ....+...++..++..+.+.+.. +.+.+. T Consensus 437 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~l~da 469 (469) T protein:vir:10 437 PNQS-AAPARTRSSGNADARARAPKADQ--GVLFDA 469 (469) T ss_pred CCCC-ccccccCCCCCcccccccCCChH--HhhccC Confidence 2222 22222222233333322222111 111111 No 3 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=100.00 E-value=2.2e-86 Score=490.14 Aligned_cols=331 Identities=21% Similarity=0.271 Sum_probs=271.1 Q ss_pred CeEEEEee------------eCCEEEEeeeeecCccceeeeeecCCCceEE-EeecCCC------------CCCceeeCC Q lcl|Aclame:pro 1 MFEQVYRI------------ENGRARLGKLAWRPPRTISRFDVAPDGGLVA-IEQWGVF------------GKATVRIPV 55 (355) Q Consensus 1 V~Eivw~~------------~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~-~~q~~~~------------g~~~~~ip~ 55 (355) |+||||++ .+|+|.|++|.+|||.+++||.|+.+++++. .+|.... ...++.||+ T Consensus 122 ~~Eivw~~~~~~~~~~~~~~~dg~~~~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~ 201 (488) T protein:vir:95 122 VNEKVYKKRQGKKGKYQSKFDDGLIGWAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPR 201 (488) T ss_pred eeeeeeeccccccccccccccCCeeeeeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccc Confidence 99999975 4799999999999999999999999988754 3443221 124567999 Q ss_pred ccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 56 DRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGL 135 (355) Q Consensus 56 ~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~ 135 (355) +|||+|+|+++++||||.|||+.|||+|+||++++++|+.|+||||+|+|+++++++......+ ......++++. T Consensus 202 ~kfi~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~-----~e~~~l~~a~~ 276 (488) T protein:vir:95 202 AKFMLFKYDDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAE-----PEKKAFVQYCK 276 (488) T ss_pred cceEEEeecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCccc-----HHHHHHHHHHH Confidence 9999999999999999999999999999999999999999999999999999997753322222 22344677889 Q ss_pred HHHHHHhcCCceeEEccCCceEEE---------eccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHH Q lcl|Aclame:pro 136 QLAKEFRAGEAAGGYIPHGANFTL---------TGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDT 205 (355) Q Consensus 136 ~~~~~~~~G~~~~~v~p~~~~ie~---------~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~v 205 (355) +++.++++|.++++|+|.++++++ +++++ +..+|.++|+|||++|||+|||||||++ .+++||+|+|+| T Consensus 277 ~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~-~~~~Gs~Al~~v 355 (488) T protein:vir:95 277 TVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMG-QSKYGSFSLADS 355 (488) T ss_pred HHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHHhccccccc-cCcchhhhHHHH Confidence 999999999999999999998766 34443 3456999999999999999999999985 446799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHH Q lcl|Aclame:pro 206 FASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRA 284 (355) Q Consensus 206 h~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e 284 (355) |++|+++++++|+++|+++||+|||++||++||++..++|+|+|+..++ |.+++++++++|+++|++++++..++|+++ T Consensus 356 h~ev~~~i~~aDa~~i~~tln~~li~~l~~~Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e 435 (488) T protein:vir:95 356 KTSLLAMSVDILLKQIKNVINRDLVAQTYALNMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLRE 435 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHH Confidence 9999999999999999999999999999999999999999999997765 558999999999999999998888999999 Q ss_pred HhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhH Q lcl|Aclame:pro 285 RYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRR 341 (355) Q Consensus 285 ~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (355) +||||.+.+++++..+..+. ....++++....+.+++.++.++++....+.++ T Consensus 436 ~~gip~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 488 (488) T protein:vir:95 436 HIGLPPADESQPVSEKLSPN----SQSRSGDGYKTAGEGTAKTPSAKDPSTANKANK 488 (488) T ss_pred HhCCCCCCCCccccccCCCC----CCCCCCcccCCCcccCCcccccccchhhhhccC Confidence 99999887766554432221 111222223333445556666776666666555 No 4 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=100.00 E-value=6.9e-84 Score=476.49 Aligned_cols=331 Identities=19% Similarity=0.167 Sum_probs=249.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |+||+|+.++|.|.|.+|.+|||+ ||.|+.++++...... .+.+++++|++|||+|+|+++++||||.|||+.|| T Consensus 136 ~~Ei~w~~~~g~~~~~~l~~r~~~---~F~~~~~~~~~l~~~~--~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~ 210 (526) T protein:vir:79 136 CIELEWALQGREWMPLAFHHRPQS---WFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLA 210 (526) T ss_pred eEEEEEeecCCceeEEEeeeeccc---ceEeccCCCcEEEecC--CCCCceeecCCceEEEeecCCcCCccccchHHHHH Confidence 999999999999999999999998 7778887776554332 23467899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) |+|+||++++++|+.|+||| |+|+++|+|+++++.+ .+++|.+++.+| |+++++|||.|++|+|+ T Consensus 211 w~~~fK~~~~~~w~~F~E~y--G~P~~igky~~~a~~~-----------ek~~L~~av~~i--~~da~~iiP~~~~ie~~ 275 (526) T protein:vir:79 211 WPYLFRHYATSDLAEMLEIY--GLPIRLGKYPPGTADE-----------EKATLLRAVTGL--GHAAAGIIPETMAIDFQ 275 (526) T ss_pred HHHHHHHhhHHHHHHHHHHc--CCceEEEecCCCCCHH-----------HHHHHHHHHHHH--hcCcEEEecCCceeEEe Confidence 99999999999999999998 5566666776654432 356677888888 66899999999999999 Q ss_pred ccCC-CcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 161 GVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 161 ~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) ++++ +...|..+|+|||++|||+||||||||+ +.+++||+|+|+||++|+++++++|+++|+++||++||++|+.+|| T Consensus 276 ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~ 355 (526) T protein:vir:79 276 QAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDILASDARQLAATLSRDLLWPLLVLNR 355 (526) T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 9754 4456999999999999999999999986 4566899999999999999999999999999999999999999999 Q ss_pred CCc---ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccc Q lcl|Aclame:pro 239 GPE---EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRL 314 (355) Q Consensus 239 ~~~---~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (355) +.. ..+|+|+|+..++ |.+++++++++|+++|+.++ .+|++++||||.|.++++...+..++..++...... T Consensus 356 ~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~----~~~i~e~~gip~~~~~e~~l~~~~~~~~~~~~~~~~ 431 (526) T protein:vir:79 356 PGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIP----SAWVYDKLGIPQPAKNEPVLRPAAQPAILSRQHGQR 431 (526) T ss_pred CCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCcCC----HHHHHHHhCCCCCCCchhhccccCCccccccccccc Confidence 854 4589999986655 66889999999999999664 689999999999998887665544333332222211 Q ss_pred cccccccCCc-ccCccccchhHHHHHhHhhhchH------HhhhcCCC Q lcl|Aclame:pro 315 PGQRQGAALP-SRSPRADPPRRRGPLRRRPRHPA------HRRCAPDG 355 (355) Q Consensus 315 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 355 (355) ....+..... .....+.+..+.....+...... .+..+-.+ T Consensus 432 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 479 (526) T protein:vir:79 432 VAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLDAVNRG 479 (526) T ss_pred cccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 1111111110 11111111111111110000000 00111111 No 5 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=100.00 E-value=2e-83 Score=474.00 Aligned_cols=331 Identities=19% Similarity=0.185 Sum_probs=250.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |+||+|+.++|.|.|+++.+|||+ ||.|+.++++.+..+.+ +.+++++|++|||+|+|+++++||||.|||+.|| T Consensus 136 ~~Ei~w~~~~g~~~~~~~~~r~~~---~f~~~~~~~~~l~~~~~--~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~ 210 (528) T protein:vir:10 136 AIELDWSLQGREWLPQAFDHRPQS---WFQLNPDDQDELRLRDN--SIAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLA 210 (528) T ss_pred eEEEEEeecCCceeEEEeeeeccc---ceeeccCCCcEEeccCC--CCCceeecCCCeEEEeecCCCCCccccchHHHHH Confidence 999999999999999999999998 78888888876655432 3467899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) |+|+||++++++|+.|+|||| +|+++|+|+++++.+ .+++|.+++.+| |+++++|||.|++|+|+ T Consensus 211 w~~~fK~~~~~~w~~f~E~yG--~P~~igky~~~a~~~-----------ek~~L~~al~~i--~~~~~~iiP~~~~ie~~ 275 (528) T protein:vir:10 211 WPYLFKHYSTADLAEMLEIYG--LPIRLGKYPPGTPDE-----------EKVTLLRAVTGL--GHAAAGIIPESMSIDFQ 275 (528) T ss_pred HHHHHHHhhHHHHHHHHHHcC--CCeEEEecCCCCCHH-----------HHHHHHHHHHHH--hhCcEEEecCCceeEEe Confidence 999999999999999999985 566666676554322 355677778888 66899999999999999 Q ss_pred ccCC-CcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 161 GVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 161 ~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) ++++ +...|.++++|||++|||+||||||||+ +++++||+|+|+||++|+++++++|+++|+++||++||++||.+|| T Consensus 276 ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~ 355 (528) T protein:vir:10 276 EASKGSAEPFMAMMRWCDDSMSKAILGGTLTSQTSESGGGAYALGQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNR 355 (528) T ss_pred ecCCCChhHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 9764 4456999999999999999999999996 4566899999999999999999999999999999999999999999 Q ss_pred CCc---ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccc Q lcl|Aclame:pro 239 GPE---EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRL 314 (355) Q Consensus 239 ~~~---~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (355) ++. ..+|+|+|+..++ |.+++++++++|+++|+.++ ++|++++||||.|.++++...+.....+.+..+.+. T Consensus 356 ~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~----~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~ 431 (528) T protein:vir:10 356 SGNLDARRAPRLVFDLKDRADLAAMATSLPPLVKLGVQVP----VNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPG 431 (528) T ss_pred CCCCCccccceEEecCCCcccHHHHHHHHHHHHhCCCCCC----HHHHHHHhCCCCCCCCcccccCCCcccccccCcccc Confidence 864 4589999997665 66889999999999999663 789999999999998887765433333222222222 Q ss_pred cccccccCCc-ccCc--cccchhHHHHHhHhhhchH------HhhhcCCC Q lcl|Aclame:pro 315 PGQRQGAALP-SRSP--RADPPRRRGPLRRRPRHPA------HRRCAPDG 355 (355) Q Consensus 315 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 355 (355) +.....+... ...+ .+.+............... .+..+-.+ T Consensus 432 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~i~~~l~~~ 481 (528) T protein:vir:10 432 PRIAALAQVIGPRYRDQEALDQVLASLPAQDMQNQADSLVAPLLDVISRG 481 (528) T ss_pred cccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 2111111110 0100 1111111111111100100 01111111 No 6 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=100.00 E-value=7e-83 Score=470.99 Aligned_cols=331 Identities=18% Similarity=0.163 Sum_probs=249.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |+||||+.++|.|.|.+|.+|||+ ||.|+.++++...... .+.+++++|++|||+|+|+.+++||||.|||+.|| T Consensus 136 ~~Eivw~~~~g~~~~~~l~~r~~~---~f~~~~~~~~~l~~~~--~~~~g~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~ 210 (526) T protein:vir:99 136 CIELEWALQGREWMPLAFHHRPQS---WFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLA 210 (526) T ss_pred eEEEEEeecCCceeEEEeeeeccc---ceeeccCCCcEEEecC--CCCCceeecCCCeEEEeecCCcCCccccchHHHHH Confidence 999999999999999999999998 7778887775544322 23467899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) |+|+||++++++|+.|+||| |+|+++|+|+++++++ .+++|.+++.+| |+++++|||.|++|+|+ T Consensus 211 w~~~fK~~~~~~w~~f~E~y--G~P~~igky~~~a~~~-----------ek~~L~~av~~i--~~d~~~iiP~~~~ie~~ 275 (526) T protein:vir:99 211 WPYLFRHYATSDLAEMLEIY--GLPIRLGKYPPGTADE-----------EKATLLRAVTGL--GHAAAGIIPETMAIDFQ 275 (526) T ss_pred HHHHHHHhhHHHHHHHHHHc--CCceEEEecCCCCCHH-----------HHHHHHHHHHHH--hhCcEEEecCCceeEEe Confidence 99999999999999999998 5666667776654332 356677888888 66899999999999999 Q ss_pred ccCC-CcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 161 GVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 161 ~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) ++++ +...|..+++|||++|||+||||||||+ +++++||+|+|+||++|+++++++|+++|+++||++||++|+.+|| T Consensus 276 ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~ 355 (526) T protein:vir:99 276 QAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNR 355 (526) T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 9754 4456999999999999999999999985 3456899999999999999999999999999999999999999999 Q ss_pred CCc---ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccc Q lcl|Aclame:pro 239 GPE---EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRL 314 (355) Q Consensus 239 ~~~---~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (355) +.. ..+|+|+|+..++ |.+++++++++|+++|+.++ .+|++++||||.|.++++...+..++..++...... T Consensus 356 ~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~----~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~ 431 (526) T protein:vir:99 356 PGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIP----SAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQR 431 (526) T ss_pred CCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCccC----HHHHHHHhCCCCCCCcccccCCCCCCcccccccccc Confidence 854 4589999986655 66889999999999999664 689999999999999888766544433332222211 Q ss_pred cccccccCC-cccCccccchhHHHHHhHhhhchHH------hhhcCCC Q lcl|Aclame:pro 315 PGQRQGAAL-PSRSPRADPPRRRGPLRRRPRHPAH------RRCAPDG 355 (355) Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 355 (355) ....+.... ......+.+..+............+ +..+-.+ T Consensus 432 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~l~~i~~~l~~~ 479 (526) T protein:vir:99 432 VAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRG 479 (526) T ss_pred cccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 111111111 0111111111111111110000000 0011111 No 7 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=100.00 E-value=3e-81 Score=462.01 Aligned_cols=326 Identities=16% Similarity=0.139 Sum_probs=243.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |+||+|++++|.|.|.+|.+|||+ ||.|+.++++..+... .+.+++++|+.|||+|+|+++++||||.|||+.|| T Consensus 136 ~~Ei~w~~~~g~~~~~~~~~r~~~---~f~~~~~~~~~lr~~~--~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~ 210 (512) T protein:vir:19 136 MQEIEWGWLGKMRVPVALHHRDPA---LFCANPDNLNELRLRD--ASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLI 210 (512) T ss_pred eeeeEeeeeCCceeeeeeeeeccc---cceeccCCCcEEEecC--CCCCceeecCCceEEEeccCCCCCcccccHHHHHH Confidence 999999999999999999999998 7777777665443322 23467899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) |+|+||++++++|+.|+||| |+|+++|+|+++++.. .+++|.+++.+| |+++++|||.|++|+|+ T Consensus 211 w~~~fK~~~~~~w~~f~E~y--G~P~~igky~~~a~~~-----------ek~~L~~al~~~--~~~a~~iiP~~~~ie~~ 275 (512) T protein:vir:19 211 WPFIFKNYSVRDFAEFLEIY--GLPMRVGKYPTGSTNR-----------EKATLMQAVMDI--GRRAGGIIPMGMTLDFQ 275 (512) T ss_pred HHHHHHHHHHHHHHHHHHHc--CCCeeEEecCCCCCHH-----------HHHHHHHHHHHH--hhCcEEEecCCceEEEe Confidence 99999999999999999998 5566667776654332 355677888888 66899999999999999 Q ss_pred ccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) ++++ +...|+.+++|||++|||+||||||||+. +++||+|+|+||++|+++++++|+++|+++||+|||++|+.+||+ T Consensus 276 ea~~~~~~~y~~li~~~d~~Isk~iLGqtlTs~~-g~~Gs~a~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~ 354 (512) T protein:vir:19 276 SAADGQSDPFMAMIGWAEKAISKAILGGTLTTEA-GDKGARSLGEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSD 354 (512) T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Confidence 9764 44569999999999999999999999975 567999999999999999999999999999999999999999998 Q ss_pred Cc---ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccccc Q lcl|Aclame:pro 240 PE---EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) Q Consensus 240 ~~---~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) +. ..+|+|+|+..++ |.+..++.+++|. +|+.+ +++|++++||||.|.++++.....++..+......+.. T Consensus 355 ~~~~~~~~p~~~f~~~e~eDl~~~a~~~~~l~-~G~~i----~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~ 429 (512) T protein:vir:19 355 STIDINRLPGIVFDTSEAGDITALSDAIPKLA-AGMRI----PVSWIQEKLHIPQPVGDEAVFTIQPVVPDNGSQKEAAL 429 (512) T ss_pred CCCCccccceEEecCCChhhHHHHHHHHHHHh-cCCCC----CHHHHHHHhCCCCCCCccccccCCCccccccccccccc Confidence 65 3589999997765 5688999999986 89966 47899999999999888766554333222211111110 Q ss_pred ccccc---cCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 316 GQRQG---AALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 316 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) ..... ...+.....+. ......+........... -+. T Consensus 430 ~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~i~~~~~-~~s 469 (512) T protein:vir:19 430 SAEDIPQEDDIDRMGVSPE--DWQRSVDPLLKPVIFSVL-KDG 469 (512) T ss_pred cccCCCchhhHhHHhhhHH--HHHHHHHHHHHHHHHHHH-hCC Confidence 00000 00000000000 000111111110000000 012 No 8 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=100.00 E-value=6.3e-80 Score=454.78 Aligned_cols=317 Identities=15% Similarity=0.106 Sum_probs=241.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |+||+|+.++|+|.|.+|.+|||+ ||.|+.+++++++.+. .+.+++++|++|||+|+|+++++||||.|||+.|| T Consensus 125 ~~Ei~w~~~~g~~~~~~l~~r~~~---~f~~d~~~~l~~~~~~--~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~ 199 (491) T protein:vir:10 125 PMEITWGKVGNYIVPIDVVGKPAD---WFVYDPENQLRFRSKD--HWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCF 199 (491) T ss_pred eEEEEEeecCCeeEEEEeeeeccc---ceeeccCCceEEecCC--CCCCcceecCCCEEEEEecCCCCCcccchhHHHHH Confidence 999999999999999999999998 7788999998877543 23467899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) |+|+||++++++|+.|+|||| +|+++|+|+++++.. .+++|.+++.+| |+++++|||.|++|+|+ T Consensus 200 w~~~fK~~~~~~w~~f~E~yG--~P~~igky~~~a~~~-----------ek~~l~~al~~~--~~~a~~viP~~~~ie~~ 264 (491) T protein:vir:10 200 WPTTFKKGGLKFWVQFTEKYG--SPMLVGKHPRSASDG-----------EKNLLLDCLEDM--VQDAVAVVPDDSSIEIK 264 (491) T ss_pred HHHHHHHHHHHHHHHHHHHcC--CCeEEEecCCCCCHH-----------HHHHHHHHHHHH--hcCcEEEecCCceeEEE Confidence 999999999999999999985 455556665544322 345677778888 66899999999999999 Q ss_pred ccCCCc---ccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 161 GVQGKL---PEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN 237 (355) Q Consensus 161 ~~~g~~---~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN 237 (355) ++++++ ..|+++|+|||++|||+||||||||+ ++||||+|+||++++++++++|+++|+++|| +||++||++| T Consensus 265 ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~---~~gs~a~~~vh~~v~~di~~~D~~~i~~tln-~li~~l~~~N 340 (491) T protein:vir:10 265 EAAGKTGSADVYERLLHFCRGEVSIALLGQNQTTE---ATSTRASAQAGLEVTDDIRDGDKAVVSEAMN-MLIRWICDLN 340 (491) T ss_pred ecCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc Confidence 986433 35999999999999999999999986 3689999999999999999999999999999 5999999999 Q ss_pred CCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccccccc Q lcl|Aclame:pro 238 WGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQ 317 (355) Q Consensus 238 f~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (355) |++. ++|+|+|.+.+++++++++++++|+++|+.+ +++|++++||||.+..+++.............. .+.. T Consensus 341 ~~~~-~~p~f~~~~~~e~~~~~a~~~~~L~~~G~~i----~~~~i~e~~Gip~~~~~~~~~~~~~~~~~~~~~-~~~~-- 412 (491) T protein:vir:10 341 FDGA-DRPVFDMWEQEQVDEIQAGRDQKLTQAGARF----TPAYFKRAYNLQDGDLDERPLPVSAVDTVGAAS-FAEF-- 412 (491) T ss_pred CCCC-CcceEEecCcCchhHHHHHHHHHHHhCCCcC----CHHHHHHHhCCCCCCcCccccccCCCCCccccc-cccc-- Confidence 9865 4799999988777789999999999999965 368999999999988776654332222111111 0000 Q ss_pred ccccCCcccCccccchhHHHHHhHh----h---hchHHhhhcCCC Q lcl|Aclame:pro 318 RQGAALPSRSPRADPPRRRGPLRRR----P---RHPAHRRCAPDG 355 (355) Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~ 355 (355) ..+.. .+.+........+. . ..+..+...--+ T Consensus 413 ----~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 451 (491) T protein:vir:10 413 ----EAPDQ--DALDAALNTLSARDLNADAQALVAPLLKRIANGA 451 (491) T ss_pred ----CCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 00000 11111111111100 0 000001111111 No 9 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=100.00 E-value=1.9e-79 Score=452.11 Aligned_cols=317 Identities=14% Similarity=0.095 Sum_probs=241.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |+||+|+.++|+|.|.+|.+|||+ ||.|+.++++++.... .+.+++++|++|||+|+|+++++||||.|||+.|| T Consensus 125 ~~Ei~w~~~~g~~~~~~l~~r~~~---~f~~d~~~~l~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~ 199 (491) T protein:vir:79 125 PMEITWGKVGNYIVPIDVVGKPAD---WFVYDPENQLRFRSKE--HWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCF 199 (491) T ss_pred eEEEEEeecCCeeeEEeeeeeccc---ceeeccCCceEEeecC--CCCCceeecCCCeEEEEecCCCCCcccchhHHHHH Confidence 999999999999999999999998 7788999998776543 23467899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) |+|+||++++++|+.|+||||+ |+++|+|++++++. .+++|.+++.+| |+++++|+|.|++|+|+ T Consensus 200 w~~~fK~~~~~~w~~f~E~~G~--P~~igky~~~a~~~-----------ek~~l~~al~~~--~~~a~~viP~~~~ie~~ 264 (491) T protein:vir:79 200 WPTTFKKGGLKFWVQFTEKYGS--PMLVGKHPRSASDA-----------ETNLLLDRLEDM--VQDAVAVIPDDSSIEIK 264 (491) T ss_pred HHHHHHHhhHHHHHHHHHHcCC--CeEEEecCCCCCHH-----------HHHHHHHHHHHH--hcCeEEEecCCceeEEE Confidence 9999999999999999999855 55556665554322 345677777777 66899999999999999 Q ss_pred ccCCC---cccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 161 GVQGK---LPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN 237 (355) Q Consensus 161 ~~~g~---~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN 237 (355) +++++ ...|+++|+|||++|||+|||||||++ ++||||+|+||++|+++++++|+++|+++|| +||++|+.+| T Consensus 265 ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~---~~gs~a~~~vh~~v~~~i~~~D~~~i~~tln-~li~~l~~~N 340 (491) T protein:vir:79 265 EAAGKSGSADVYERLLHFCRGEVSIALLGQNQTTE---ATSTRASAQAGLEVTDDIRDGDKAIVVEAMN-MLIRWICDLN 340 (491) T ss_pred eccCCCCChhHHHHHHHHHHHHHHHHHhhhhhccC---cccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc Confidence 87642 345999999999999999999999985 3689999999999999999999999999999 5999999999 Q ss_pred CCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccccccc Q lcl|Aclame:pro 238 WGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQ 317 (355) Q Consensus 238 f~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (355) |++. +.|+|.+.+.+++++++++++++|+++|+.+ +++|++++||||.+.++++..+...+..+....... . . T Consensus 341 ~~~~-~~p~f~~~e~ee~~~~~a~~~~~L~~~G~~i----~~~~~~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~-~-~ 413 (491) T protein:vir:79 341 FDGA-ARPVFDMWEQEQVDEIQAGRDEKLTRAGARF----TPAYFKRAYNLQDGDLDERPLPVSAVDAVGAASFAE-F-E 413 (491) T ss_pred CCCC-CcceEeecCcCchhHHHHHHHHHHHhCCCcc----CHHHHHHHhCCCCCCCCccccCcCcccccccccccc-c-C Confidence 9765 4689999888777788999999999999965 478999999999988877655433322222111100 0 0 Q ss_pred ccccCCcccCccccchhHHHHHhHhhhchH------HhhhcCCC Q lcl|Aclame:pro 318 RQGAALPSRSPRADPPRRRGPLRRRPRHPA------HRRCAPDG 355 (355) Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 355 (355) .....+.+........+...... .+..+-.+ T Consensus 414 -------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 450 (491) T protein:vir:79 414 -------APDQDALDAALNALSARDLNADAQALVAPLLKRIANG 450 (491) T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 00011111111111110000000 00011111 No 10 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=100.00 E-value=2.8e-79 Score=451.21 Aligned_cols=320 Identities=14% Similarity=0.126 Sum_probs=238.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeC-CccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIP-VDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip-~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) |+||+|+.++|+|.|.+|.+|||+ ||.|+++++++++++... .+++++| +.||++|+|++++|||||.|||+.| T Consensus 115 ~~Ei~w~~~~g~~~~~~l~~r~~~---~f~~d~~~~l~~~~~~~~--~~g~~lp~~~~~i~~~~~~~~g~p~g~gLl~~~ 189 (488) T protein:vir:99 115 VSELIYGRDDRYITLEAIKVRNRR---RFRYDQDGGLRLLTPNNM--FEGEPCPAPYFWHFSTGADNDDEPYGLGLAHWL 189 (488) T ss_pred eEEEEEeecCCeeeEeeeeeeccc---ceeecCCCceEEeccCCC--CCccccccCceEEEEeecCCCCCcccchHHHHH Confidence 999999999999999999999998 788899999887765433 3567886 5689999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCC-CccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLP-EAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~-~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) ||+|+||++++++|+.|+|||| +|+++++|++ +++. +.+++|.+++.++ |+++++|+|.|++|+ T Consensus 190 ~w~~~fK~~~~~~w~~f~E~yG--~P~~igky~~~~a~~-----------~ek~~l~~av~~~--~~~~~~viP~~~~ie 254 (488) T protein:vir:99 190 YWPVFFKRNGIKFWLIFLDKFG--MPTAVGRYDDKTATP-----------EDKAKLLAALHAI--QTDSAIIMPAGMQAE 254 (488) T ss_pred HHHHHHHHhhHHHHHHHHHHcC--CceeeeecCCCCCCH-----------HHHHHHHHHHHHH--hcCcEEEecCCceeE Confidence 9999999999999999999985 5556666654 2221 1355677888888 668999999999999 Q ss_pred EeccCCC-cccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 159 LTGVQGK-LPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN 237 (355) Q Consensus 159 ~~~~~g~-~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN 237 (355) |++++++ ...|..+|+|||++|||+|||||||+++ ++||||+|+||++++++++++|+++|+++||+|||++|+++| T Consensus 255 ~~ea~~~~~~~~~~li~~~d~~Isk~iLGqtlts~~--~~Gs~a~~~vh~~v~~d~~~aDa~~i~~tln~~li~~l~~~N 332 (488) T protein:vir:99 255 LLEAGRSGTADYKTLHDTMDATIAKVGLGQVASTQG--TPGRLGNDDLQADVRLDLVKADADLICESFNLGPARWLTEWN 332 (488) T ss_pred EeecCCCChHHHHHHHHHHHHHHHHHHhhhhhcccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Confidence 9997654 4569999999999999999999999753 568999999999999999999999999999999999999999 Q ss_pred CCCcccccEEEecCCC-ccHHHHHHHHHHHHhC-CCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccccc Q lcl|Aclame:pro 238 WGPEEPAPRLVPAQLG-KEQPVTAEAIRALVEC-GAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) Q Consensus 238 f~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~-G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) |+.. .+|+|+|+..+ +|.+++++++++|+++ |+.+ +++|++++||||.+.++++...+.+....... T Consensus 333 ~~~~-~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~~i----~~~~i~e~~Gip~~~~~~~~~~~~~~~~~~~~------ 401 (488) T protein:vir:99 333 FPGA-QPPRVYRVIEEPEDITAKAERDEKVFRMSGFRP----TRGYVQETYGVEVESTQAEATAPTPSTEFAEG------ 401 (488) T ss_pred cCCc-CCceeEecCCCcccHHHHHHHHHHHHhhcCCCC----CHHHHHHHcCCCCcccccccccCCCcccCCCC------ Confidence 9754 57999998655 4778999999999997 8865 47899999999998877654432211111110 Q ss_pred ccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 316 GQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) .......+...++... ............-.......+- T Consensus 402 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~a~s 439 (488) T protein:vir:99 402 -DQPSDPAAAMAPQLAE-AMQPVVGNWTTQLRTLIEQASS 439 (488) T ss_pred -CCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC Confidence 0000000001011000 0011111111111111110111 No 11 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=100.00 E-value=1.4e-78 Score=447.47 Aligned_cols=307 Identities=21% Similarity=0.242 Sum_probs=242.7 Q ss_pred CeEEEEee-eCCEEEEeeeeecCccceeeeeecCCCceEEEeecCC-----CCCCceeeCCccEEEEecCCCCCccccch Q lcl|Aclame:pro 1 MFEQVYRI-ENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGV-----FGKATVRIPVDRLVVFVNEREGANWLGQS 74 (355) Q Consensus 1 V~Eivw~~-~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~-----~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ 74 (355) |+||||+. .+|+|.+.+|.+|||++++||.|+.++++..+++.+. .+..++++|.+||++|.+ +++|||||.| T Consensus 135 ~~Eivw~~~~~g~~~~~~l~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~-~~~g~p~g~g 213 (448) T protein:vir:79 135 AGEIVLTLGADGKLILDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLH-NDDGSFTGQS 213 (448) T ss_pred eEEEEeeecCCCceecccccccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEec-CccCCcccch Confidence 99999986 6899999999999999999999999999888876543 234567889999998754 7889999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC Q lcl|Aclame:pro 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG 154 (355) Q Consensus 75 ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~ 154 (355) ||+.|||+|+||++++++|+.|+||||+|+|+++++.+...++ ..+++|.+++.++++|+++++|||+| T Consensus 214 Llr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga~~~~-----------~~~~~l~~av~~i~~g~~a~~iiP~~ 282 (448) T protein:vir:79 214 ALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIPKSVRQGT-----------KQWEAAKEIVKNFVQKPRHGIILPDD 282 (448) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCcCH-----------HHHHHHHHHHHHHhcCCceEEEecCC Confidence 9999999999999999999999999977766666554433211 13567889999999999999999999 Q ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 155 ~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++|||+++++++.+|.++|+|||++|||+|||||||+++.+++|+.++ .+|.+++.+++++|+++|+++||+|||++|| T Consensus 283 ~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~g~~~~~~-~~~~~v~~~~~~aDa~~i~~tln~~li~~l~ 361 (448) T protein:vir:79 283 WKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFNTVQLNMGVQAINI-GEFVSLTQQTIISLQREFASAVNLYLIPKLV 361 (448) T ss_pred ceEEEEecCCCcccHHHHHHHHHHHHHHHHhhhhhccccccchhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999888899999999999999999999999976544333433 4688999999999999999999999999999 Q ss_pred HhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) ++||++..++|+|+|+..++ |.+++++++++|++++ +..++|+++.+|+|++.++++....... . T Consensus 362 ~lNfg~~~~~P~~~f~~~e~~Dl~~~a~~~~~l~~~~-----~~~~~~~~~~~~~p~~~~~~~~~a~~~~---------~ 427 (448) T protein:vir:79 362 LPNWPSATRFPRLTFEMEERNDFSAAANLMGMLINAV-----KDSEDIPTELKALIDALPSKMRRALGVV---------D 427 (448) T ss_pred HhcCCCcCCCcEEEecCCChHHHHHHHHHhhhhhccc-----hhhHHHHHHhhcCCCCCCCccccccCCC---------C Confidence 99999999999999997766 5588999999999875 3347899999999988776532211111 1 Q ss_pred ccccccccCCcccCccccchhHHHHHhH Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRADPPRRRGPLRR 341 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (355) .++.....+++.+..-... ++ T Consensus 428 ~~~~~~~~~~~~~~~~~~~-------~~ 448 (448) T protein:vir:79 428 EVREAVRQPADSRYLYTRR-------RR 448 (448) T ss_pred cccccccCCccccchhhcc-------cC Confidence 1111111111111111110 11 No 12 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=100.00 E-value=2.4e-77 Score=440.65 Aligned_cols=307 Identities=22% Similarity=0.268 Sum_probs=234.5 Q ss_pred CeEEEEee-eCCEEEEeeeeecCccceeeeeecCCCceEEEeecCC-----CCCCceeeCCccEEEEecCCCCCccccch Q lcl|Aclame:pro 1 MFEQVYRI-ENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGV-----FGKATVRIPVDRLVVFVNEREGANWLGQS 74 (355) Q Consensus 1 V~Eivw~~-~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~-----~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ 74 (355) |+||||+. .+|+|.|.+|.+|||++++||.|+.+++|+++++.+. .+.+++++|..||++|. .+++|||||.| T Consensus 135 ~~Eivw~~~~dg~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~-~~~~g~p~g~g 213 (448) T protein:vir:77 135 AGEIVLTLGADGKLILDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFL-HNDDGSFTGQS 213 (448) T ss_pred eEEEEEeecCCCceeeccccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEe-cCCcCCcccch Confidence 99999986 6899999999999999999999999999888766442 33456788999998775 57889999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC Q lcl|Aclame:pro 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG 154 (355) Q Consensus 75 ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~ 154 (355) ||+.|||+|+||++++++|+.|+||||+|+++++++.+...++ ..+++|.+++.|+++|+++++|||+| T Consensus 214 Llr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga~~~~-----------~~~~~l~~av~~i~~g~~a~~iiP~g 282 (448) T protein:vir:77 214 ALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIPKSVRQGT-----------KQWEAAKEIVKNFVQKPRHGIILPDD 282 (448) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHcCCceeEEecCCCCCCCH-----------HHHHHHHHHHHHHhcCCceEEEecCC Confidence 9999999999999999999999999977666665554432211 13567889999999999999999999 Q ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 155 ~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++|+|+++++++.+|.++|+|||++|||+|||||||+++.+++++.+++ .|.+++.+++++|+++|+++||+|||++|| T Consensus 283 ~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~g~~~~~~~-~~~~v~~~~~~aDa~~i~~tln~~Li~~l~ 361 (448) T protein:vir:77 283 WKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFNTVQLNMGVQAVNIG-EFVSLTQQTIISLQREFASAVNLYLIPKLV 361 (448) T ss_pred ceEEEEecCCCccCHHHHHHHHHHHHHHHHhccccccccccchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999998888999999999999999999999999765443444444 466899999999999999999999999999 Q ss_pred HhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) ++|||+..++|+|+|+..++ |.+++++++++|+ +++++++|||.+.++.....+ ..+.+. T Consensus 362 ~lNfg~~~~~P~~~f~~~e~eDl~~~a~~~~~l~------------~~~~~~~~ip~~~~~~~~~~~---~~~~~~---- 422 (448) T protein:vir:77 362 LPNWPGATRFPRLTFEMEERNDFSAAANLMGMLI------------NAVKDSEDIPTELKALIDALP---SKMRRA---- 422 (448) T ss_pred HhcCCCCCCCCEEEecCCChhhHHHHHHHhHHHH------------HHHHHHhcCCccCCcCCCCCc---hhcccc---- Confidence 99999999999999997665 6688899998886 368999999987654221111 111000 Q ss_pred ccccccccCCcccCccccchhHHHHHhHhhhchHHhh Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRR 350 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (355) ++.. ..+..+....+....+.. +-|+ T Consensus 423 -~~~~-~~~~~~~~~~~~~~~~~~---------r~~~ 448 (448) T protein:vir:77 423 -LGVV-DEVREAVRQPADSRYLYT---------RRRR 448 (448) T ss_pred -cCCC-CCCCchhhcchhhHHHHh---------hhcC Confidence 0000 000000000111111111 1111 No 13 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=100.00 E-value=1.3e-76 Score=436.61 Aligned_cols=290 Identities=14% Similarity=0.207 Sum_probs=231.3 Q ss_pred CeEEEEeeeCCEEEEeee----eecCccceeeeeecCCCceE-----EEeecC-------------------CCCCCcee Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKL----AWRPPRTISRFDVAPDGGLV-----AIEQWG-------------------VFGKATVR 52 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l----~~r~~~~i~~f~~~~~g~l~-----~~~q~~-------------------~~g~~~~~ 52 (355) |+||||++.+|.+.|.++ ..+.+..+ +|.++.+++++ .+.|.. .....+++ T Consensus 116 ~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (446) T protein:vir:98 116 LSEQIYAHGARDNMPATVLDDIVNYHPLQV-MLIANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVR 194 (446) T ss_pred eeeEEEeecccccccchhhccccccccccc-eeeeccCCccccccccchhhcccccccCcccchhhhhhhhcccCccccc Confidence 999999999888887654 23334444 45677666542 111110 11223567 Q ss_pred eCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHH Q lcl|Aclame:pro 53 IPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKE 132 (355) Q Consensus 53 ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~ 132 (355) ||.+||++|+|+++++||||.||||.|||+|+||++++++|+.|+||||+|+|+++++.+....+.+.....+......+ T Consensus 195 iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~ 274 (446) T protein:vir:98 195 LPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAE 274 (446) T ss_pred ccccceEEEEecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999988777777766655555555555555555666 Q ss_pred HHHHHHHHHhcCCceeEEc-----cCCceEEEeccCCCc-ccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHH Q lcl|Aclame:pro 133 EGLQLAKEFRAGEAAGGYI-----PHGANFTLTGVQGKL-PEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDT 205 (355) Q Consensus 133 ~l~~~~~~~~~G~~~~~v~-----p~~~~ie~~~~~g~~-~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~v 205 (355) .|.+++.++ ++++++|+ |+|++|||+++++++ .+|+++|+|||++|||+|||||||++ ..+++||+|+|+| T Consensus 275 ~L~~av~~~--~~da~~ii~~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~v 352 (446) T protein:vir:98 275 QAEDALRRL--STDSGLVLTQLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEI 352 (446) T ss_pred HHHHHHHhc--cccceeeeecccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHH Confidence 677777777 56777877 999999999987655 47999999999999999999999864 3456799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccE-----EEecCCC-ccHHHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 206 FASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPR-----LVPAQLG-KEQPVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 206 h~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~-----~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) |++|+.+++++|+++|+++||+|||+|||++||++...+|+ ++|...+ +|.+++++++++|+++|+++++ ++ T Consensus 353 h~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~~~~~~~~~~~~~~~~~~e~eDl~~~a~~~~~L~~~G~~~p~--~~ 430 (446) T protein:vir:98 353 QLELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDPALYPLASNTGYITRLPGRATDLAALVEAIKQMHDMGFLVDG--DK 430 (446) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccceeccCChhhHHHHHHHHHHHHhCCccccc--cH Confidence 99999999999999999999999999999999987654432 3344333 4778999999999999998753 58 Q ss_pred HHHHHHhCCCCCCCcc Q lcl|Aclame:pro 280 KDLRARYGLPAPAERD 295 (355) Q Consensus 280 ~~~~e~~glp~~~~~~ 295 (355) +|++++||||++.++. T Consensus 431 ~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 431 DHIRSITGLPDAISST 446 (446) T ss_pred HHHHHHhCcCCCCCCC Confidence 9999999999876654 No 14 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=99.75 E-value=2.6e-18 Score=116.98 Aligned_cols=335 Identities=15% Similarity=0.031 Sum_probs=184.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCC---ccccchhHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGA---NWLGQSLLR 77 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~---~p~G~~ll~ 77 (355) ..++++.. +|. +..|.+.||.+++ +..+++|++.+......+|.....++....|+|.+..... ..||.|.+. T Consensus 202 YieIiRd~-~G~--ii~L~pLdPs~Vt-i~~ddDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIe 277 (945) T protein:vir:10 202 AIVKIRDE-QGN--LVAITPVDGTTIK-PILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIE 277 (945) T ss_pred EEEEEECC-CCc--EEEEEEECCcceE-EEEcCCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHH Confidence 66776643 443 5688999998885 5667777765433334455555678888888887654432 346888899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCcee--EEccCCc Q lcl|Aclame:pro 78 QAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG--GYIPHGA 155 (355) Q Consensus 78 ~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~--~v~p~~~ 155 (355) .+......-....++-+.+.-+.| ..|-++-...... ..+.+...+......+.+++...+..+|.+.+ ++++.|+ T Consensus 278 aa~~aI~~alAaek~aar~FskNG-a~PsGILsvkg~~-~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGm 355 (945) T protein:vir:10 278 ILYKVILSDIFIDKGNLDYYRKGG-SIPEGILAIEPPS-YKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKF 355 (945) T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CccceEEEecCcc-ccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCc Confidence 998887776666666666654443 3453222211110 01111112222334445555555555554433 5789999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +++-++.+.....|.+..++..++|++++..+---+ +...+++++..+-+...+ ...+.-.+..|+..||+.|++.. T Consensus 356 ef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP~lL-G~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~- 433 (945) T protein:vir:10 356 TWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR- 433 (945) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc- Confidence 988887665556688888999999999988764333 222334555555555555 56789999999999998664321 Q ss_pred HhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccC------- Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAA------- 306 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~------- 306 (355) ....-+|.|+...- +.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....+.....+ T Consensus 434 ------eg~~i~fdFd~ldl~D~ksraEal~kli~sGiLT-----iNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka 502 (945) T protein:vir:10 434 ------NEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRS-----INEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKA 502 (945) T ss_pred ------cCceeEEEecchhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceeeecccccccccccccc Confidence 11223566654332 5578999999999999875 3789999999876555543221110000 Q ss_pred ----Cccc---c-ccccccccccCCcccCc---cccchhHHHH--HhHhhhchHHhhh------cCCC Q lcl|Aclame:pro 307 ----GRRR---A-KRLPGQRQGAALPSRSP---RADPPRRRGP--LRRRPRHPAHRRC------APDG 355 (355) Q Consensus 307 ----~~~~---~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~------~~~~ 355 (355) .+.+ . ...+.. .++..+...+ ...+..+... .=++....+.++. .-|- T Consensus 503 ~~ga~p~q~aq~~~dqp~~-kGGe~dEns~~psE~kda~~e~~~~l~~~~~~~a~e~i~~~~e~~~~~ 569 (945) T protein:vir:10 503 QQGAMPPQLAQAMADQPSQ-QGGGVDENSSVPSEQKNAGLEVLRNLFKSLDANASENLKQVIELTNDD 569 (945) T ss_pred ccCCCCcccccCCCCCCCC-CCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC Confidence 0000 0 000110 0111111111 1111111111 1111112221111 1111 No 15 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=99.66 E-value=9.5e-16 Score=102.93 Aligned_cols=294 Identities=11% Similarity=0.025 Sum_probs=172.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCc-eEEE-eecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG-LVAI-EQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~-l~~~-~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++... | .+..|.+.||.+++ +..+.+|+ +.+. +.....+.....+|...+|++++....+.+||.|.+.. T Consensus 99 ~~~i~r~~~-g--~~~~l~~l~~~~v~-i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~ 174 (397) T protein:vir:38 99 YAYRHKNTN-G--VDLSWEYLRPSQVQ-PMLLQDGSGLIYNINFDEPAIGYMENVPAADVIHIRLLSKNGGKTGISPLSA 174 (397) T ss_pred EEEEEECCC-C--cEEEEEEEcCceeE-EEEcCCCceEEEEEEeccccccceeEecCccEEEecCCCCCCccccccHHHH Confidence 777877543 3 47789999998775 44555554 3332 22222223345789999998888877778899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC--CceeEEccCCce Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG--EAAGGYIPHGAN 156 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G--~~~~~v~p~~~~ 156 (355) +....-.-....++...+...- ++|-++.+.......+ ..+ .+++......++ +...++++.|++ T Consensus 175 ~~~~i~~~~~~~~~~~~~f~ng--~~~~~il~~~~~~~~e---~~~--------~~~~~~~~~~~~~n~~~~~vl~~g~~ 241 (397) T protein:vir:38 175 LINEQQIKDASNELTLKALKQS--VTASAVLTIQKGGLLD---AET--------RIARSKEISKQIHNSDGPVVIDALED 241 (397) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCccEEEEeCCCCCHH---HHH--------HHHHHHHHHhcccccCCceecCCCce Confidence 9999888888888888888754 3444333332221111 111 122222222222 334588999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) ++-++.+.....|.+..++..++|++++..+.-..+... ++++..+-........+.-.+..|++.||+.|++.. ++ T Consensus 242 ~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~--~~~~~~e~~~~~~~~~l~P~~~~ie~~ln~~l~~~~-~~ 318 (397) T protein:vir:38 242 YKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQG--DQQSSITQISGQYAKSLNRYVQAIVGELNDKLHANI-SA 318 (397) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh-cc Confidence 998877766677889999999999999888643332221 222222222334445777888889999998776542 11 Q ss_pred CCCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccc-ccccCCcccccccc Q lcl|Aclame:pro 237 NWGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAA-AAKAAGRRRAKRLP 315 (355) Q Consensus 237 Nf~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (355) + +.+ ....+.++.++.+++|++.|+.. .+++|+.+|+|+-..++...... ..........+.+. T Consensus 319 ~---------~~~-~~~~d~~~~~~~~~~~~~~G~~t-----~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~~g~ 383 (397) T protein:vir:38 319 N---------IRF-AIDAMGDQYASTISSSVKGGTIA-----GNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQEGGE 383 (397) T ss_pred c---------ccc-cccCCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCccccccccccccccccccccCC Confidence 1 222 12346788899999999999765 47999999997644433211111 11111111111111 Q ss_pred ccccccCCcccCccccchh Q lcl|Aclame:pro 316 GQRQGAALPSRSPRADPPR 334 (355) Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ 334 (355) . ......+...+++ T Consensus 384 ~-----~~~~~~e~~~~~~ 397 (397) T protein:vir:38 384 N-----DGNNSDERGSDPE 397 (397) T ss_pred C-----CCCCCCCCCCCCC Confidence 1 1111112222222 No 16 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=99.66 E-value=6e-16 Score=104.04 Aligned_cols=322 Identities=14% Similarity=0.111 Sum_probs=178.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeec-CCCceEEEeecC-CCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVA-PDGGLVAIEQWG-VFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~-~~g~l~~~~q~~-~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++... | .+..|.+.++.+++ +..+ ..+++.+..+.. ..+...+.+|...+||+++....+..+|.|.+.. T Consensus 117 y~~i~r~~~-G--~~~~L~~l~p~~v~-v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~ 192 (518) T protein:vir:10 117 YLAIQKNKS-G--TPEKLMPMHPSRVA-IKRNSRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMES 192 (518) T ss_pred EEEEEECCC-C--cEEEEEEECCCceE-EEEcCCCCEEEEEEEecCCccceEEEecCCcEEEecCCCCCcccccccHHHH Confidence 667776433 3 47789999888775 3444 345555543322 2233446788889988887666667799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCc Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGA 155 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~ 155 (355) +......-....++-..|...- +.|-++..+.... +++ ..+.+++...+..+| ....+|++.|+ T Consensus 193 a~~~i~~~~a~~~~~~~~f~ng--~~p~gil~~~~~l---s~e--------~~~~~k~~~~~~~~G~~nag~v~vL~~G~ 259 (518) T protein:vir:10 193 LKSTIFSEDSSRNATAAMWKNA--GRPNLVLRHEKRL---SEA--------AQQRLREQFDRAHSGSSNTGKTMVVEEGM 259 (518) T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCccEEEecCCCC---CHH--------HHHHHHHHHHHHhcCccccCcceEcCCCc Confidence 9988888888888888888653 4553333332211 111 122333333333333 22468899999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS-FFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +++-++.+.....|.+..++...+|++++..+--.. +....++++-.+.+.. .....+.-.++.|++.||+.|++.+ T Consensus 260 ~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~l-g~~~~~t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~~- 337 (518) T protein:vir:10 260 EPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIV-HILDRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYW- 337 (518) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc- Confidence 999888766666688888999999999988864333 2223356665444433 3455678889999999998776542 Q ss_pred HhCCCCcccccEEEec--CC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCC--Ccccccc-----ccc-- Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPA--QL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPA--ERDDGAD-----AAA-- 302 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~--~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~--~~~~~~~-----~~~-- 302 (355) .... +|+|+ .. ..|.++.++.+.++++.|+.. .+++|+.+|+|+-+ .++.... +.. T Consensus 338 -----~~~~--~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT-----~NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~ 405 (518) T protein:vir:10 338 -----VRKN--RMKFDIDDVIQPDWEAKSESTQKMVNSGVAT-----PNEGREIMGLPRSDDPKADELYANSALQPLGAT 405 (518) T ss_pred -----cCCc--eEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCCeeeecccceecccc Confidence 1222 45554 32 247788999999999999865 47899999998543 2222110 000 Q ss_pred ccc---CCccccccccccccccCCcc-----------------cCccccchhHHHHHhHh---hhchHHhh----hcCCC Q lcl|Aclame:pro 303 AKA---AGRRRAKRLPGQRQGAALPS-----------------RSPRADPPRRRGPLRRR---PRHPAHRR----CAPDG 355 (355) Q Consensus 303 ~~~---~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~ 355 (355) ... .+..+....++....++.+. ......++++. +++. -..+.|.+ |.-.| T Consensus 406 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 483 (518) T protein:vir:10 406 PDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGLSPTNSDRSTDSGKTEPRRL--MQKPPPKESSPKHLRAVKGAMGRG 483 (518) T ss_pred cccccCCCCCCCCCCCCccccccccccccccCCCCCcccccccccccccchhcc--ccCCCcccccchHHHHHHHHhhcC Confidence 000 00000000000000000000 00000011110 0100 01111111 12222 No 17 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=99.66 E-value=6.9e-16 Score=103.69 Aligned_cols=324 Identities=14% Similarity=0.096 Sum_probs=176.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC-CCceEEEeecC-CCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP-DGGLVAIEQWG-VFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~-~g~l~~~~q~~-~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++... | .+..|.+.++.+++ +..+. .+++.+..+.. ..+...+.+|...+|++++....+..+|.|.+.. T Consensus 117 y~~i~r~~~-G--~~~~L~~l~p~~Vt-v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~ 192 (518) T protein:vir:78 117 YLAIQKNKS-G--TPEKLMPMHPSRVA-IKRNSRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMES 192 (518) T ss_pred EEEEEEcCC-C--cEEEEEEECCCceE-EEEcCCCCEEEEEEEecCCccceeEEecCCcEEEecCCCCCcccccccHHHH Confidence 667766432 3 37788999988775 33444 44554433322 2233446788999988886666666789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCc Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGA 155 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~ 155 (355) +......-....++-..|...- +.|-++..+....+ ++ ..+.+++...+..+| ....+|++.|+ T Consensus 193 ~~~~i~~~~aa~~~~~~~f~Ng--~~p~gvl~~~~~ls---~e--------~~~~~k~~~~~~~~G~~nag~~~vL~~G~ 259 (518) T protein:vir:78 193 LKSTIFSEDSSRNATAAMWKNA--GRPNLVLRHEKRLS---PE--------AQQRLREQFDRAHAGSSNTGKTMVVEEGM 259 (518) T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCccEEEecCCCCC---HH--------HHHHHHHHHHHHhcCcccCCceeEcCCCc Confidence 9988777777777777777643 45533333322111 11 122333333333333 23468899999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASF-FTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +++-++.+.....|.+..++...+|++++..+.-.. +....++++-.+-+... ....+.-.+..|+..||+.|++.+ T Consensus 260 ~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~l-g~~~~st~sn~e~~~~~f~~~tL~P~~~~ie~eln~~L~~~~- 337 (518) T protein:vir:78 260 EPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIV-HILDRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYW- 337 (518) T ss_pred eEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc- Confidence 998887766656688888899999999988864333 22234566655544443 355678889999999998776542 Q ss_pred HhCCCCcccccEEEec--CC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC-cccccc------ccccc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPA--QL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE-RDDGAD------AAAAK 304 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~--~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~-~~~~~~------~~~~~ 304 (355) .... +|+|+ .. ..|.++.++.+.++++.|++. .+++|+.+|+|+-++ +.+..- +.... T Consensus 338 -----~~~~--~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT-----~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~ 405 (518) T protein:vir:78 338 -----VRKN--RMKFDIDDVIQPDWEAKSESTQKMVNSGVAT-----PNEGREIMGLPRSDDPKADELYANSALQPLGAT 405 (518) T ss_pred -----cCcc--eEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeecccceecccc Confidence 1222 45554 32 247788999999999999875 478999999975432 222110 00000 Q ss_pred -----cCCccccccccccccccCCcccCcccc---------------chhHHHHHhHh---hhchHHhh----hcCCC Q lcl|Aclame:pro 305 -----AAGRRRAKRLPGQRQGAALPSRSPRAD---------------PPRRRGPLRRR---PRHPAHRR----CAPDG 355 (355) Q Consensus 305 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~---~~~~~~~~----~~~~~ 355 (355) ..+..+....++....++.+...+++. .......+++. -..+.|.+ |.-.| T Consensus 406 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (518) T protein:vir:78 406 PDGAVEGEEAPAPKRPASTPVASLDQSPPASVPGLSPTNSDRSTDSGKTEPRRLMQKPPPKESSPKHLRAVKGAMGRG 483 (518) T ss_pred cccccCCCCCCCCCCCCcccccccccCccccCCCCCcccccccccccccchhcccCCCCcccccchHHHHHHHHhhcC Confidence 000000000011100000000000000 00000001111 01111111 11111 No 18 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=99.65 E-value=2.8e-15 Score=100.33 Aligned_cols=314 Identities=12% Similarity=0.042 Sum_probs=184.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCC-C-CCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVF-G-KATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~-g-~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++... |+ +..|.+.++.+++ +..+++|++.+....... + .....+|...+||+++....+.++|.|.+.. T Consensus 121 ~~~i~r~~~-G~--~~~L~~i~~~~v~-v~~~~~g~~~y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~ 196 (454) T protein:vir:93 121 VVLKIRNAR-GQ--IKELRILDWNRVE-PLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYA 196 (454) T ss_pred EEEEEECCC-Cc--EEEEEEEcCcceE-EEEcCCCcEEEEEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHH Confidence 778887543 33 7789999998886 456777877654332211 1 2345688888888887777788899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCce Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGAN 156 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~ 156 (355) +....-.-....++...+...- +.|-++.++.... +++ ..+.+++....+.+|.+ ..+|++.|++ T Consensus 197 ~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~l---~~e--------~~~~~~~~~~~~~~g~n~g~~~vl~~g~~ 263 (454) T protein:vir:93 197 AGLAATQGHHIQENSTSFFRNG--GRPSGVIEIPGSI---TEE--------NAKKLKSNWDSGYTGENAGKTAILSNGAK 263 (454) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCccEEEecCCCC---CHH--------HHHHHHHHHHHHhcccccCCceeccCCce Confidence 9888877777777777777542 4454444433211 111 12234444444444433 3688999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) ++-++.+.....|.+..++...+|++++..+.-..+ ....++++..+-+. ......+.-.++.|+..||+.|++. T Consensus 264 ~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~--- 339 (454) T protein:vir:93 264 YNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIG-VGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG--- 339 (454) T ss_pred EEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcC-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--- Confidence 998887766667888888899999999887754332 22335565544443 3456677888889999999876432 Q ss_pred hCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccc--------cccC Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAA--------AKAA 306 (355) Q Consensus 236 lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~--------~~~~ 306 (355) ...+-+|.++..- .|.++.++.+.++++.|++. .+++|+.+|+|+-+.+|+...... +... T Consensus 340 -----~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~ 409 (454) T protein:vir:93 340 -----ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLT-----PNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDA 409 (454) T ss_pred -----CCcEEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCc Confidence 2223344444332 47788999999999999865 479999999987655443211110 0000 Q ss_pred Cc-cccccc-----cccccccCCcccCccccchhHHHHHhHhhhc Q lcl|Aclame:pro 307 GR-RRAKRL-----PGQRQGAALPSRSPRADPPRRRGPLRRRPRH 345 (355) Q Consensus 307 ~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (355) .. .....+ +...+..+........+.-..+...+....- T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~d~~~~~~~~~~~~ 454 (454) T protein:vir:93 410 REDPFASSGKTASVPQAVAASDGNKAITETEHDAVKAMFRGILKK 454 (454) T ss_pred ccCCCCCCccCCCCCCCCCCCCCCCCccCCccchhhhhhhhhhcC Confidence 00 000000 0011111111111111112222222322222 No 19 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=99.64 E-value=1.5e-15 Score=101.87 Aligned_cols=298 Identities=10% Similarity=0.007 Sum_probs=174.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+++. .+|. +..|.+.+|.++. ...+.+|++.+..+.. .| ....+++..+|++++.. .+.++|.|.+..+. T Consensus 115 ~~~i~~--~~g~--~~~L~~l~~~~v~-~~~~~~~~~~y~~~~~-~g-~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~ 186 (414) T protein:vir:44 115 YAYKVK--AFGE--VAELLPVDPGCVV-PKLNSSWEPVYQVTFP-DG-STDVLSQEDIWHVRTLT-LDGLVGLNPIAYAR 186 (414) T ss_pred EEEEEe--CCCc--EEEEEEEcCceEE-EEECCCCcEEEEEEec-Cc-eEEEEccccEEEecCCC-CCCcccccHHHHHH Confidence 444433 2343 6778889888764 5567788877655433 23 34578888888888664 45589999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-.-....++...+...- +.|-++....... ++ +..+..++.+.+..... .+....++++.|++++-+ T Consensus 187 ~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~l---~~----e~~~~~~~~~~~~~~g~-~n~~~~~vl~~g~~~~~l 256 (414) T protein:vir:44 187 EAISLAAATEEHGARLFSNG--AVTSGVLRTEQTL---SD----QAYERLKKDFEERHTGL-GNAHRPMILEMGLDWKSM 256 (414) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCC---CH----HHHHHHHHHHHHHhcCc-cccCcceecCCCceEEEc Confidence 87766666666666766643 4454443333221 11 11222222222222111 012236889999999888 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASF-FTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+.-..+ ..+.++++-.+-+... ....+.-.++.|++.||+.|++.-- T Consensus 257 ~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~-~~~~~t~~n~e~~~~~~~~~~l~P~~~~ie~~ln~~L~~~~~----- 330 (414) T protein:vir:44 257 ALNAEDSQFLETRKFQLEEICRLFRVPLHMVQ-NTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRKSK----- 330 (414) T ss_pred cCChHHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc----- Confidence 76665566888889999999999888753332 2234566665544444 4557788888999999987765421 Q ss_pred CcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccc Q lcl|Aclame:pro 240 PEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQR 318 (355) Q Consensus 240 ~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (355) ....+.+|.++... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....+......+.... +... T Consensus 331 ~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~---~~~~ 402 (414) T protein:vir:44 331 QGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYS-----PNDCRDLEDMNPRPGGDVYLTPMNMTTKPSDGS---KAGK 402 (414) T ss_pred cCceEEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceecccccccccCCccc---cCCC Confidence 11112233333332 46789999999999999875 378999999986544444332221111111100 1111 Q ss_pred cccCCcccCccc Q lcl|Aclame:pro 319 QGAALPSRSPRA 330 (355) Q Consensus 319 ~~~~~~~~~~~~ 330 (355) .+.+++...+.+ T Consensus 403 ~~~~~~~d~~~~ 414 (414) T protein:vir:44 403 QKDNANADETTS 414 (414) T ss_pred CCCCCCCCCCCC Confidence 111111111111 No 20 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=99.64 E-value=1.4e-15 Score=102.06 Aligned_cols=294 Identities=11% Similarity=0.050 Sum_probs=179.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++.. .| .+..|.+.||.+++ +..+.+++.++... ...| ....+|...++++++.. .+.++|.|.+..++ T Consensus 116 ~~~i~r~~-~G--~~~~L~~l~~~~v~-v~~~~~~~~~~~~~-~~~g-~~~~~~~~eiih~~~~~-~~~~~G~s~i~~~~ 188 (416) T protein:vir:12 116 YSYIQFGS-HG--YPEALFPLRPDYTN-AYVHPTTGMLWYQT-VLNG-KAIELYDYEVLHFKGLS-TDGIHGKSPIGVVR 188 (416) T ss_pred EEEEEECC-CC--cEEEEEEECCcceE-EEEeCCCcEEEEEE-ecCC-eEEEecCccEEEecCcC-CCCcccccHHHHHH Confidence 66666643 23 48889999998886 34555555544433 2233 34678899988887664 45589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-.-....++...+.+.- +.|-++.++.... +++. .+.+++....+.. ....++++.|++++-+ T Consensus 189 ~~i~~~~~~~~~~~~~~~ng--~~p~~il~~~~~~---~~e~--------~~~~~~~~~~~~~-~~~~~vl~~g~~~~~l 254 (416) T protein:vir:12 189 EHIGAQAAATKYNAKLYKNE--ATPRGILKVPAFL---DEKP--------KENVRKEWKRVNK-VENIAIIDYGLEYQSI 254 (416) T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCceEEecCCCC---CHHH--------HHHHHHHHHHHhc-CCCeeecCCCceEEEc Confidence 98888777777777887753 4454443433221 1111 1223333333332 3457889999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS-FFTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+.-..+ ....++++-.+-+.. .....+.-.++.|+..||+.|++..-. T Consensus 255 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l~~~~~~---- 329 (416) T protein:vir:12 255 SMPLQEAQFVESMKFNKAQISMIYKVPLHKLN-ELDKATFSNIEHQSIEYVRNTLQPWIVNFEQELNVKLFLDHDQ---- 329 (416) T ss_pred cCChhhHHHHHHHHHHHHHHHHHhCCCHHHhC-CccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh---- Confidence 87766667888999999999999888654332 223456665554443 446778889999999999988754211 Q ss_pred CcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc--CCccccccc Q lcl|Aclame:pro 240 PEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA--AGRRRAKRL 314 (355) Q Consensus 240 ~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~--~~~~~~~~~ 314 (355) ..-.+|+|+. . ..|.++.++++.++++.|+.. .+++|+.+|+|+-+.++....+..-.. ......... T Consensus 330 --~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~~~~~~~ 402 (416) T protein:vir:12 330 --KSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLN-----KDEIRELLERNPIENGDKYISSLNYVFLDFLEEYQRLK 402 (416) T ss_pred --cCCceEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceeeeccccccccccchhhccc Confidence 1112455543 2 247788999999999999865 479999999987655554332211100 001111111 Q ss_pred cccc-cccCCcccC Q lcl|Aclame:pro 315 PGQR-QGAALPSRS 327 (355) Q Consensus 315 ~~~~-~~~~~~~~~ 327 (355) .+.. .+++..... T Consensus 403 ~~~~~~gge~~~~g 416 (416) T protein:vir:12 403 AGGAMKGGDNKNEG 416 (416) T ss_pred cccccCCCCCcCCC Confidence 1110 011111111 No 21 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=99.63 E-value=1.4e-15 Score=102.07 Aligned_cols=299 Identities=14% Similarity=0.062 Sum_probs=177.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|.+ ++|+ +..|.+.+|.+++ +..+.+|.+.+..+.. .| ....+|...+|++++.. .+..+|.|.+..+. T Consensus 128 y~~i~~--~~G~--~~~L~~l~p~~v~-~~~~~~g~~~y~~~~~-~g-~~~~~~~~eVih~~~~~-~dg~~G~spi~~~~ 199 (434) T protein:vir:43 128 YAEIRR--AAGR--PAALDFLLPSRVD-LECDENGRLKYFYTTK-KG-ARREIERTNMLHIPAFT-LDGRIGLSAIRYGV 199 (434) T ss_pred EEEEEe--CCCc--EEEEEEEcCcceE-EEEcCCCeEEEEEEec-Cc-eEEEEccccEEEecCcC-CCCccccCHHHHHH Confidence 444544 3554 6778889998886 5677788877654432 23 35679999998887764 45589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCC--ceeEEccCCceEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE--AAGGYIPHGANFT 158 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~--~~~~v~p~~~~ie 158 (355) ...-.-....++-..|...- +.|-++.+.....+ ++ ..+.+++..+++..+. ...+|++.|++++ T Consensus 200 ~~i~~~~~~~~~~~~~f~ng--~~~~gil~~~~~l~---~e--------~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~ 266 (434) T protein:vir:43 200 DVFGSVMSAEDAANGTFKNG--LLPTVAFKVDRILQ---PA--------QREEFREYVKSVSGAMNSGRSPVLEQGITPE 266 (434) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCcceEEecCCCCC---HH--------HHHHHHHHHHHhcCccccCCccccCCCceEE Confidence 88877777777777777642 34544433332211 11 1223444455444332 2357899999998 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccch--hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGS--YA-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS--~A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) -++.+.....|.+..++..++|++++..+.-..+ ...++| ++ ..+.........+.-.+..|+..||+.|++.--. T Consensus 267 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~ 345 (434) T protein:vir:43 267 TIGINPVDAQLLETREHGVIEICRWFGVPPWMIG-QTDKGSNWGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPER 345 (434) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhh Confidence 8876666667888999999999999988643332 212233 22 2233334455678888889999999877654211 Q ss_pred hCCCCcccccEEEec--CC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPA--QL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAK 312 (355) Q Consensus 236 lNf~~~~~~P~~~~~--~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~ 312 (355) .+ . .|+|+ .. ..|.++.++.+.++++.|++. .+++|+.+|+|+-+.+|....+.. ..+-..... T Consensus 346 ~~-----~--~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~ggD~~~~~~n-~~~~~~~~~ 412 (434) T protein:vir:43 346 IR-----Y--YAEFSLEGFLKADSAGRAAWYSTMAQNGFMT-----RNEGRRKENLPELPGGDILTVQSN-LVPIDQLGQ 412 (434) T ss_pred cC-----c--eEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeEeeccC-ccchhhhhc Confidence 11 1 34554 32 247789999999999999875 478999999986544443322211 111111111 Q ss_pred cccccccccCCcccCccccchh Q lcl|Aclame:pro 313 RLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~ 334 (355) ..+...+........++++..+ T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 413 SNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred cCCCcchhhhhhccCCCCCCCC Confidence 1111111111111111111111 No 22 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=99.63 E-value=2.6e-15 Score=100.50 Aligned_cols=293 Identities=11% Similarity=0.017 Sum_probs=174.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++. .|. +..|.+.++.+++ +..+.++++.+..+.. .| ....+|...+|++++.. .+.++|.|.+..++ T Consensus 114 ~~~i~~~--~g~--~~~L~~l~~~~v~-~~~~~~~~~~y~~~~~-~g-~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~ 185 (413) T protein:vir:48 114 YAYKVKA--LGE--VVELLPIDPGCVE-PKLNSQWQPVYQVTFP-DG-SVDVLTQDEIWHVRTLT-LDGLVGLNPIAYAR 185 (413) T ss_pred EEEEEeC--CCc--EEEEEEEcCceEE-EEEcCCceEEEEEEec-Cc-eEEEEccccEEEecCcC-CCCcccccHHHHHH Confidence 4556543 343 6788888888775 5677777766544432 23 33568888888887665 45589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCceE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGANF 157 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~~i 157 (355) ...-.-....++...+...- +.|-++.+...... ++ ..+.+++.......| ....++++.|+++ T Consensus 186 ~~i~~~~~~~~~~~~~~~ng--~~p~gil~~~~~~~---~e--------~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~ 252 (413) T protein:vir:48 186 EAISLAAATEEHGARLFGNG--AVTSGVLRTEQKLT---PD--------AYERLKKDFEERHTGLGNAHRPMILEMGLDW 252 (413) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCcceEEEeCCCCC---HH--------HHHHHHHHHHHHhcCccccCcceecCCCceE Confidence 88776666666666666542 44544433322211 11 122233333333223 2235889999999 Q ss_pred EEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 158 TLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF-ASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 158 e~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh-~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) +-++.+.....|.+..++..++|+.++..+.-..+ ..+.++++..+-+ .......+.-.++.|++.||+.|++.--. T Consensus 253 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~~n~e~~~~~f~~~~i~P~~~~ie~~l~~~L~~~~~~- 330 (413) T protein:vir:48 253 KSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQ-NTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRESKQ- 330 (413) T ss_pred EeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc- Confidence 88876666667888889999999999988753332 2233566654433 34445577888889999999877654211 Q ss_pred CCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccc Q lcl|Aclame:pro 237 NWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 237 Nf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) ... +|+|+ ... .|.++.++.++++++.|+..+ +++|+.+|+|+-+.+|....+...... ...... T Consensus 331 ----~~~--~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~-----NE~R~~~g~~p~~ggD~~~~~~n~~~~-~~~~~~ 398 (413) T protein:vir:48 331 ----GKF--YAKFNAGALLRGDMKSRFEAYATGINWGIYSP-----NDCRDLEDMNPRPGGDVYLTPMNMTTS-PSAGDD 398 (413) T ss_pred ----CCe--EEEEechhhhccCHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCCCCcceeecccccccc-cccccc Confidence 112 34444 332 367889999999999998764 789999999865555543332221111 111111 Q ss_pred ccccccccCCcccCccc Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRA 330 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~ 330 (355) .......++.+..+ + T Consensus 399 ~~~~~~~~~~~~~~--~ 413 (413) T protein:vir:48 399 NGKKKESGDADKTA--S 413 (413) T ss_pred CCCCCCCCCccccC--C Confidence 11111111111111 1 No 23 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=99.62 E-value=2.9e-15 Score=100.33 Aligned_cols=292 Identities=11% Similarity=0.012 Sum_probs=176.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce-----EEEeecCCCCCCceeeCCccEEEEecCCCCCccccchh Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL-----VAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSL 75 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l-----~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~l 75 (355) +.+|++... |+ +..|.+.+|.+++ ...+++|.+ .........| ....+++..+|++++....+.++|.|. T Consensus 119 ~~~i~r~~~-G~--~~~L~~i~~~~v~-~~~~~~~~~~~~~~~~y~~~~~~g-~~~~~~~~eiih~~~~~~~~~~~G~s~ 193 (422) T protein:vir:13 119 YAYIERDRK-GK--IIGLYPINSDNVT-KIIDDDNFLSSLSKVWYVVTDKNG-KEHKLLPDEMLHFIGDITLDGLIGIKP 193 (422) T ss_pred EEEEEECCC-Cc--EEEEEEECCcceE-EEEcCCcceeccceEEEEEEeCCC-eEEEEcccceEEEcCCCCCCCcccccH Confidence 667776543 43 7789999999886 445665532 1122222233 335688899999887766678899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEcc Q lcl|Aclame:pro 76 LRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIP 152 (355) Q Consensus 76 l~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p 152 (355) +..+....-.-....++...+...- +.|-++.++....+ ++ . .+.+++....+.+| ....+|++ T Consensus 194 ~~~~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~l~---~e----~----~~~~~~~~~~~~~g~~n~~~~~vl~ 260 (422) T protein:vir:13 194 LDYLRCTIENGRATQEFINKFFKNG--LSIKGIVQYVGDLD---EK----A----KKIFKKEFESMSNGLENAHSISLLP 260 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEEeCCCCC---HH----H----HHHHHHHHHHHhcCccccCCceecC Confidence 9999988777777777777777642 44544444332211 11 1 22233333333333 33468899 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF-ASFFTGSLNAVMKHIADVTQQHVVE 231 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh-~~v~~~~~~ad~~~i~~~ln~~li~ 231 (355) .|++++-++.+.....|.+..++..++|++++..+.-... ....++++..+-+ .......+.-.++.|+..||+.|++ T Consensus 261 ~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg-~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~ 339 (422) T protein:vir:13 261 FGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLN-DLERATFNNLTEQQKDFYVTTLQSSLTVYEQEIQDKLFS 339 (422) T ss_pred CCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC Confidence 9999988877666667888889999999999888753332 2233455544433 3444667788899999999998877 Q ss_pred HHHHhCCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCc Q lcl|Aclame:pro 232 DLVDQNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGR 308 (355) Q Consensus 232 ~l~~lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~ 308 (355) ..-.. .. .+|+|+ ... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|.......-..-.. T Consensus 340 ~~~~~----~g--~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~ggD~~~~~~n~~~l~~ 408 (422) T protein:vir:13 340 QYETL----QD--VKAEFNVDTILRSDIKTRYEAYRIGIQGGFIE-----ANEARRRENLPPVEGGDRLLVNGNMIPIEM 408 (422) T ss_pred hhhhc----CC--ceEEeechhhhcCCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeeccCccchhh Confidence 54211 11 134444 332 36788999999999999865 478999999986554443332211100000 Q ss_pred cccccccccccccC Q lcl|Aclame:pro 309 RRAKRLPGQRQGAA 322 (355) Q Consensus 309 ~~~~~~~~~~~~~~ 322 (355) .......+...++. T Consensus 409 ~~~~~~~~g~~~g~ 422 (422) T protein:vir:13 409 AGEQYKKGGEKGGK 422 (422) T ss_pred cccccccCCCcCCC Confidence 00000011111111 No 24 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=99.62 E-value=3.2e-15 Score=100.05 Aligned_cols=299 Identities=12% Similarity=0.008 Sum_probs=173.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++... | .+..|.+.++.++. +..+.+|.+.+.. ...| ..+|.+-+++.++.. .+..+|.|.+..+. T Consensus 116 ~~~i~r~~~-G--~~~~L~~l~~~~v~-v~~~~~g~~~y~~--~~~g---~~~~~~eiih~~~~~-~d~~~G~spi~~~~ 185 (421) T protein:vir:10 116 YSIIDRDGK-G--YPKELIPINPKKVI-VLKGPDGMPYYEI--PEIG---ETLPMRMMHHVKVFS-LDGYIGSSPIQTNA 185 (421) T ss_pred EEEEEEcCC-C--cEEEEEEecCceEE-EEECCCceEEEEE--cCCC---cEEchhhEEEecCcC-CCCcccccHHHHHH Confidence 666766432 3 47789898888775 4456666655433 2222 357887777777655 45589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCceE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGANF 157 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~~i 157 (355) ...-.-....++...+...-+.+-=+++.+...... .+ + +..+.+++...+..+| ....++++.|+++ T Consensus 186 ~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~-~~----~----e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~ 256 (421) T protein:vir:10 186 DVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAI-KS----Q----EKIDQLLAKWTDRYSGINNMFSVALLQEGMSY 256 (421) T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCcc-CC----H----HHHHHHHHHHHHHhcCccccCcceecCCCceE Confidence 887777777777777776532222233332211111 11 1 1223333333343333 2346899999999 Q ss_pred EEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 158 TLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 158 e~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) +-++.+.....|.+..++..++|++++..+.-.. +..+.++++-.+-+. ......+.-.++.|+..||+.|+..-- T Consensus 257 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~-- 333 (421) T protein:vir:10 257 KQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMV-QMLAKATNNNIEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSE-- 333 (421) T ss_pred EecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHc-CCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc-- Confidence 9888766666788888999999999988865333 222345565444333 444557788888888999887765421 Q ss_pred CCCCcccccEEEecC--CC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccc Q lcl|Aclame:pro 237 NWGPEEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 237 Nf~~~~~~P~~~~~~--~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) .... .|+|+. .. .|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....+..-...... .. T Consensus 334 ---~~~~--~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~--~~ 401 (421) T protein:vir:10 334 ---RRDL--YIEFNVSGLLRGDQKSRYESYALGRQWGWLS-----VNDIRRMENLPPIAGGDKYLTPLNMVDSAQI--IP 401 (421) T ss_pred ---cCCe--EEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceeeecccccccccc--cc Confidence 1111 355543 22 47789999999999999865 4799999999876555544332221110000 00 Q ss_pred ccccccccCCcccCccccchhHHHH Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRADPPRRRGP 338 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355) +.+.. ++..+...+..+... T Consensus 402 ~~~~~-----~~~~~~e~d~~~~~~ 421 (421) T protein:vir:10 402 GDKKP-----TAQQMAEIDTILSRT 421 (421) T ss_pred CCCCc-----ccccCcccccccccC Confidence 00000 001111111111111 No 25 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=99.62 E-value=8.6e-15 Score=97.70 Aligned_cols=293 Identities=12% Similarity=0.064 Sum_probs=166.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeee-cCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDV-APDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~-~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) +.+|+++-.+|+ +..|.+.+|.++.-... +..++..... +.. .+..+|...+|++++....+.++|.|.+..+ T Consensus 112 ~~~i~~~~~~g~--~~~L~~l~p~~v~v~~~~~~~~~~~~~~-~~~---~g~~~~~~dvih~~~~~~~~~~~G~s~i~~~ 185 (409) T protein:vir:84 112 FGYISARDEANR--PTAIMPIHPDCIHVTDAKDEDGDWIEPV-YRI---DGKVVPNHRIMHIKRYPVAGCALGMSPIEKA 185 (409) T ss_pred EEEEEEECCCCc--eEEEEEEcCceeEEEEcCCCcceEEEEE-ecC---CceEEchhhEEEecCCCCCcccccccHHHHH Confidence 556666544554 77888888886642222 2233333322 222 2346888999988887777888999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) ....-.-....++...+...- +.|-++.+..... +++. .+..++...+. ..++...++++.|++++- T Consensus 186 ~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~l---~~e~----~~~~~~~~~~~----~~n~g~~~vl~~g~~~~~ 252 (409) T protein:vir:84 186 ASAIGLGLAAERYGLRWFRDS--ANPSGILSSDADL---TPDQ----VKQTQKQWIQS----HHNRRLPAVMSAGIKWQS 252 (409) T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCccEEEecCCCC---CHHH----HHHHHHHHHHH----hccCCCeeecCCCceEEE Confidence 888877777777777777643 4454443332211 1111 12222222222 234455788999999988 Q ss_pred eccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 160 TGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY--A-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 160 ~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~--A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) ++.+.....|.+..++..++|++++..+--..+ ...+++. + ..+-........+.-.++.|+..||+.|. T Consensus 253 ~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L~------ 325 (409) T protein:vir:84 253 VSITPNESQFLETRSFQRSEIAMWFRIPPHMIG-DVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQALDTFLP------ 325 (409) T ss_pred ccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ Confidence 876655566888888889999998877643332 1122222 2 12222344455677788888888887541 Q ss_pred CCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccccc Q lcl|Aclame:pro 237 NWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) Q Consensus 237 Nf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) ...+-+|.++... .|.++.++++.++++.|+.. .+++|+.+|+|+-+.+|....+..-... .......+ T Consensus 326 ----~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~g~~p~~ggD~~~~~~n~~~~-~~~~~~~~ 395 (409) T protein:vir:84 326 ----RGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWS-----VNEVRAWEDAPPIPEGDIHLQPMNFVPL-GYVPPEEP 395 (409) T ss_pred ----CCCeEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceeeeccccccc-ccCCcccc Confidence 1222244443332 47789999999999999865 4789999999865554443322111100 00000000 Q ss_pred ccccccCCcccCcc Q lcl|Aclame:pro 316 GQRQGAALPSRSPR 329 (355) Q Consensus 316 ~~~~~~~~~~~~~~ 329 (355) .............+ T Consensus 396 ~~~~~~~~~~~gn~ 409 (409) T protein:vir:84 396 AQEPQPNSATEGNK 409 (409) T ss_pred CcCCCCCCccCCCC Confidence 00000000000011 No 26 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=99.61 E-value=4.1e-15 Score=99.45 Aligned_cols=291 Identities=10% Similarity=0.053 Sum_probs=172.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCC--CCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVF--GKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~--g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.+|++... | .+..|.+.||.+++ +..+.+|++.+..+.... ......+|+..+|++++... +..+|.|.+.. T Consensus 135 y~~i~r~~~-G--~~~~L~~i~~~~v~-v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dviHir~~~~-dg~~G~spi~~ 209 (441) T protein:vir:98 135 YIEITRDKT-G--EPMNLTFRKTSEIE-LKLDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL-DGINGLSLLDT 209 (441) T ss_pred EEEEEEcCC-C--cEEEEEEEcCceeE-EEECCCCcEEEEEEEeccCcceeeEEEccccEEEeccCCC-CCccccCHHHH Confidence 777877543 3 37789999998775 567888888765543211 11234688889998887654 44799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCc Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGA 155 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~ 155 (355) +....-.-....++-..|...- +.|-++..+.... .+.+ ..+.+++......+| +...++++.|+ T Consensus 210 ~~~~i~~~~a~~~~~~~~f~ng--~~~~gil~~~~~~--~~~e--------~~~~~~~~~~~~~~G~~nag~~~vl~~g~ 277 (441) T protein:vir:98 210 LSRTIESDNNGKDFLNNFLRNG--THAGGILKMKGVL--DNKK--------ARDRAREEFHKSFSGTKQAGKVVVLDESM 277 (441) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCcEEEEeCCCC--CCHH--------HHHHHHHHHHHHhcCccccCcceecCCCc Confidence 9888777777777777777753 3444333332211 1111 122233323332333 22468999999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +++-++.+.....|.+..++..++|++++..+.-..+.. . ++++..+. +..+...+.-.++.|+..||+.|++.. T Consensus 278 ~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~-~-~~~s~~q~-~~~y~~tl~P~~~~ie~~ln~~L~~~~-- 352 (441) T protein:vir:98 278 TFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE-T-ANMSITDA-NLDYLSTLKPYITCVCAELNFKFNDEY-- 352 (441) T ss_pred eEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC-C-CCccHHHH-HHHHHHHHHHHHHHHHHHHHhhccccc-- Confidence 999887766666688888999999999988874434322 2 22222221 222334667778888888887664321 Q ss_pred hCCCCcccccEEEecC--CC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc------C Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA------A 306 (355) Q Consensus 236 lNf~~~~~~P~~~~~~--~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~------~ 306 (355) ... +|+|+. .. .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++.......... . T Consensus 353 -----~~~--~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~gGd~~~~~~~~n~~~~~~~~ 420 (441) T protein:vir:98 353 -----VNR--EFKFDTTEIRVVDEKTQAEIDKINIDSGKMN-----IDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVD 420 (441) T ss_pred -----cCc--eEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCcceEeeccccccccccc Confidence 112 455543 22 47788999999999999876 479999999986444443221111111 0 Q ss_pred --CccccccccccccccCCcc Q lcl|Aclame:pro 307 --GRRRAKRLPGQRQGAALPS 325 (355) Q Consensus 307 --~~~~~~~~~~~~~~~~~~~ 325 (355) +.......+....+++... T Consensus 421 ~~q~~~~~~~~~~~kgGe~ne 441 (441) T protein:vir:98 421 EYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccCCCCCCC Confidence 0111111111112222111 No 27 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=99.61 E-value=2.3e-15 Score=100.82 Aligned_cols=337 Identities=11% Similarity=0.058 Sum_probs=175.7 Q ss_pred CeEEEEeeeCCEE------------EEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCC Q lcl|Aclame:pro 1 MFEQVYRIENGRA------------RLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGA 68 (355) Q Consensus 1 V~Eivw~~~~g~~------------~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~ 68 (355) +.|++...+++.. ....+.+.+|.++. +..+++|.+..+......+...+.+++..+||+++....+ T Consensus 161 YveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~-v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d 239 (648) T protein:vir:79 161 VIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMK-VKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKG 239 (648) T ss_pred EEEEEecCCCccchhhhhhhhccccceeeeEeecCceeE-EEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCCC Confidence 6788775544221 12446667777664 5667788876655545555556778899999888777788 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCcee Q lcl|Aclame:pro 69 NWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG 148 (355) Q Consensus 69 ~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~ 148 (355) .+||.|.+..|....-.-....++...|.... ..|-++.++....... +..+..++.+.....++.. ..+ T Consensus 240 ~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NG--a~P~gil~~~~~~~~~------e~~k~~~e~~~~~~~~~~i--~gg 309 (648) T protein:vir:79 240 RAFGTPWLLPALDDIRALRQVEENVLRLVYRN--LHPLWHVKVGLEQEGF------GAEEGEVDLVRGEVENMDV--EGG 309 (648) T ss_pred CceeccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEEeCCCccch------HHHHHHHHHHHHhcccccc--ccc Confidence 99999999999999888888888888888764 3455444443221111 1112223333333222211 112 Q ss_pred EEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 GYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQH 228 (355) Q Consensus 149 ~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~ 228 (355) .+.++.+.++... +.....|.+..++..++|+.++..+-.-+ +..++++++.++.+...+...+...+..++..++.. T Consensus 310 ~v~~~~~~i~~~~-s~~dlqfle~rk~~~~eIa~aFgVPP~lL-G~~~~ss~stae~~~~~~~~~i~~l~~~i~~~le~~ 387 (648) T protein:vir:79 310 MVTTERVNISSIA-SNQIIDAKEYLKHFEQRAFTVLGVSELMM-GRGGTASRSTGDNLSSDFKDRIKALQKVMATFINEF 387 (648) T ss_pred ccccceeeccccC-CHHHHHHHHHHHHHHHHHHHHhCCCHhHc-ccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2233333333221 11122467777888899999988875434 333456777777777777777777777777777665 Q ss_pred HHHHHH-HhCCC---CcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccc--cccc Q lcl|Aclame:pro 229 VVEDLV-DQNWG---PEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDG--ADAA 301 (355) Q Consensus 229 li~~l~-~lNf~---~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~--~~~~ 301 (355) +...+. ...|. ....+.+|.|..... |.+..++.+.++++.|++. .+++|+.+|+|+-.+++.. .... T Consensus 388 ~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~GilT-----~NEaR~~lGlpPi~~g~~~~~l~~~ 462 (648) T protein:vir:79 388 MVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAIS-----EDEMRELIGRDPVDDGEGRAKMHLQ 462 (648) T ss_pred HHHHHhhhhhccccccccceEEEeecccchhhHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCccccccc Confidence 554332 22221 122334677765544 5567888899999999865 4789999999754433321 1000 Q ss_pred ---cccc-CCcccc--cccccccc-ccCCc----ccCccccchhHH---HHHhHhhhchH-------HhhhcCCC Q lcl|Aclame:pro 302 ---AAKA-AGRRRA--KRLPGQRQ-GAALP----SRSPRADPPRRR---GPLRRRPRHPA-------HRRCAPDG 355 (355) Q Consensus 302 ---~~~~-~~~~~~--~~~~~~~~-~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~ 355 (355) .... +....+ +++.+... .+.+. ....++++.... .....-+.|.+ .--...++ T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (648) T protein:vir:79 463 MVTIAQATALAALAPTPAGGSSASASGDKKKKATDNKTKPTNQHGTKTSPKKQTNGRHVRYMQEMLLEYTTLNEA 537 (648) T ss_pred cccchhccccccCCCCCCCCCCCCccccccccccCCCCCCCCCCCcCCCCccccchhhhhhhhhhhhcchhhhHH Confidence 0000 000000 00000000 00000 000001110000 00000000000 00011111 No 28 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=99.61 E-value=3.9e-15 Score=99.56 Aligned_cols=294 Identities=12% Similarity=0.057 Sum_probs=171.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +..+++.. .|+ +..|.+.|+.+++ +..+++++.+.++.....| ....+|+..+|++++....+..+|.|.+..+. T Consensus 51 ~~~i~r~~-~G~--~~~L~~l~~~~v~-~~~~~~~~~~~y~~~~~~g-~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~ 125 (348) T protein:vir:93 51 YVLIERDI-YHQ--PSKLFLLNPDVVE-MLIENQSRELYYSIHAATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLK 125 (348) T ss_pred EEEEEECC-CCc--EEEEEEEcCCceE-EEEeCCCcEEEEEEEcCCC-eEEEEccccEEEecCCCCCCceeeccHHHHHH Confidence 44454432 333 6789999998775 4455665544444333334 34568999988888765667788999988887 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-.-... ..|. +. .++.+ +.++...+... +++ .....++.+.+ ...++...++++.|++++-+ T Consensus 126 ~~i~~~~~~-~~~~-~~-~~~~~-~~~i~~~~~~l---~~e----~~~~~~~~~~~----~~~n~~~~~vl~~g~~~~~l 190 (348) T protein:vir:93 126 NTTDFDNAV-RTFN-LT-EMQKP-DSFMLKYGSNV---STE----KRQQVLEDFKQ----YYEENGGILFQEPGVEIEPL 190 (348) T ss_pred HHHHHHHHH-HHHH-HH-hcCCC-ceeEEecCCCC---CHH----HHHHHHHHHHH----HhhcCCCeeecCCCceEEEc Confidence 655443322 3332 22 23332 33333333221 111 12222333333 33355567899999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+....+ ..++++++..+-+...+ ...+.-.++.|++.||+.|++.. +.. T Consensus 191 ~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg-~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~-~~~-- 266 (348) T protein:vir:93 191 PKKYVSEDIVASENLTRERVANVFQLPSIFLN-ARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT-DRE-- 266 (348) T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccc-- Confidence 77766677899999999999999888754443 33456777666555444 56778888999999998777642 111 Q ss_pred CcccccEEEecCCC---ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccc Q lcl|Aclame:pro 240 PEEPAPRLVPAQLG---KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPG 316 (355) Q Consensus 240 ~~~~~P~~~~~~~~---~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (355) ..-+|+|+... .|.++.++.+.++++.|+.. .+++|+.+|+|+-+.+|.......-. +... ...... T Consensus 267 ---~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T-----~NE~R~~~g~~p~~ggD~~~~~~n~~-~~~~-~~~~~~ 336 (348) T protein:vir:93 267 ---KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYT-----INDIREWEDLPPVEGGDKPLISGDLY-PIDT-PLELRK 336 (348) T ss_pred ---CcceEEeechhhhccCHHHHHHHHHHHHhCCCCC-----HHHHHHHhCCCCCCCcCeEeeccccc-cccc-chhhcc Confidence 11245554322 36788999999999999876 47899999998654444433221111 1000 000011 Q ss_pred cccccCCcccCc Q lcl|Aclame:pro 317 QRQGAALPSRSP 328 (355) Q Consensus 317 ~~~~~~~~~~~~ 328 (355) ...+++...+.. T Consensus 337 ~~~gg~~n~~~~ 348 (348) T protein:vir:93 337 SLKGGDKNVNES 348 (348) T ss_pred cccCCCCCcCCC Confidence 111111111111 No 29 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=99.61 E-value=5e-15 Score=98.99 Aligned_cols=294 Identities=11% Similarity=0.031 Sum_probs=169.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++... |. +..|.+.|+.+++ +..+.+++.+..+.....| ....+|...+|++++....+..||.|.+..+. T Consensus 112 y~~i~r~~~-G~--~~~L~~l~~~~v~-v~~~~~~~~~~y~~~~~~g-~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~ 186 (409) T protein:vir:96 112 YVLIERDIY-HQ--PSKLFLLNPDVVE-MLIENQSRELYYSIHAATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLK 186 (409) T ss_pred EEEEEECCC-Cc--EEEEEEEcCceeE-EEEeCCCcEEEEEEEcCCc-eEEEEccccEEEeCCCCCCCccccccHHHHHH Confidence 566666432 33 6789899988775 4556665544444433334 34578899999888665567788999998776 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-.-....+.+ .-.++.+ +-++...+...+ .+ ..+..++... +...++...++++.|++++-+ T Consensus 187 ~~i~~~~~~~~~~---~~~~~~~-~~~i~~~~~~l~---~e----~~~~~~~~~~----~~~~n~g~~~vl~~g~~~~~l 251 (409) T protein:vir:96 187 NTTDFDNAVRTFN---LTEMQKP-DSFMLKYGSNVS---TE----KRQQVLEDFK----QYYEENGGILFQEPGVEIEPL 251 (409) T ss_pred HHHHHHHHHHHHH---HHhcCCC-ceeEEecCCCCC---HH----HHHHHHHHHH----HHhhcCCCeeecCCCceEEEc Confidence 5544333333332 2223333 222322222211 11 1122222222 333345568899999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS-FFTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+--..+. ...++++..+-+.. ....-+.-.++.|++.||+.|++..- T Consensus 252 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~----- 325 (409) T protein:vir:96 252 PKKYVSEDIVASENLTRERVANVFQLPSIFLNA-RSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTD----- 325 (409) T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc----- Confidence 766666678888889999999999887544432 23456666554443 34556788889999999987776421 Q ss_pred CcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccc Q lcl|Aclame:pro 240 PEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPG 316 (355) Q Consensus 240 ~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (355) ...--+|+|+. . ..|.++.+++++++++.|+.. .+++|+.+|+|+-+.+|....... ..+-+. ...... T Consensus 326 -~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T-----~NE~R~~~g~~pi~ggD~~~~~~n-~~~~~~-~~~~~~ 397 (409) T protein:vir:96 326 -REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYT-----INDIREWEDLPPVEGGDKPLISGD-LYPIDT-PLELRK 397 (409) T ss_pred -ccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCC-----HHHHHHHhCCCCCCCcceeeeccc-cccccc-chhhcc Confidence 11112455543 2 247789999999999999865 478999999986544444332111 111100 000011 Q ss_pred cccccCCcccCc Q lcl|Aclame:pro 317 QRQGAALPSRSP 328 (355) Q Consensus 317 ~~~~~~~~~~~~ 328 (355) ...+++.+.+.. T Consensus 398 ~~~gG~~n~~e~ 409 (409) T protein:vir:96 398 SLKGGDKNVNES 409 (409) T ss_pred cccCCCCCcCCC Confidence 111111111111 No 30 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=99.60 E-value=4.7e-15 Score=99.12 Aligned_cols=294 Identities=13% Similarity=0.071 Sum_probs=170.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++. +|+ +..|.+.+|..++ ...+.+|++.+..+. ..| ....+|.+.+|++++.... ..+|.|.+..+. T Consensus 129 y~~~~~~--~g~--~~~L~~l~p~~v~-v~~~~~g~~~y~~~~-~~g-~~~~~~~~~iih~r~~~~d-g~~G~spi~~~~ 200 (432) T protein:vir:97 129 YVRKVVT--DGR--IESLQYLANDRLT-ITTDTKGNTAYRYRR-TDG-QMIDIPRQQIWKIMGYSLD-GENGLSAIRYGA 200 (432) T ss_pred EEEEEec--CCc--EEEEEEEcCcceE-EEEcCCCcEEEEEEe-cCc-eEEEEccccEEEecCcCCC-CcccccHHHHHH Confidence 6677774 454 6788889888774 556778887665442 223 4567899999888766544 479999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-.-....++-..|...- +.|-++.+..... +++ . .+.+++...... .+...++++.|++++-+ T Consensus 201 ~~i~~~~a~~~~~~~~f~ng--~~~~gil~~~~~l---~~e----~----~~~~~~~~~~~~-nag~~~vl~~g~~~~~l 266 (432) T protein:vir:97 201 QIFGTAIAAEAQAARAFRNG--QLQSVYYQIDRFL---TDD----Q----YDSFSKKVSGSV-EAGRAPLLEGGMDVKSL 266 (432) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCcceeEecCCCC---CHH----H----HHHHHHHHhhhh-cCCCceecCCCceEEEc Confidence 88766666666666666542 4554443332211 111 1 112222222221 22357899999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALG----DTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~----~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) +.+.....|.+..++..++|++++..+--.++ ....|+++.+ +........-+.-.++.|+..||+.|+..-- T Consensus 267 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~~~~s~~e~~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e-- 343 (432) T protein:vir:97 267 GLNPVDAQLLQSRQYSVESICRFFGVPPSMIG-HSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLTPAE-- 343 (432) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHcC-CcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc-- Confidence 77666667888899999999999887643232 2222333322 2222334456677778888888877755421 Q ss_pred CCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcc---c Q lcl|Aclame:pro 237 NWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRR---R 310 (355) Q Consensus 237 Nf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~---~ 310 (355) ... -.|+|+. . ..|.++.++.+.++++.|+.. .+++|+.+|+|+-+.+++.........+.+. + T Consensus 344 ----~~~-~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T-----~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~~ 413 (432) T protein:vir:97 344 ----RRR-YFADFDTSALLRADSAARSSYYSQLVNNGLMT-----RDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQ 413 (432) T ss_pred ----cCc-eEEEeechhhhccCHHHHHHHHHHHHhCCCCC-----HHHHHHHhCCCCCCCCcceEeecccccchhhhccc Confidence 111 1455543 2 247788999999999999865 4789999999876544433322111111110 0 Q ss_pred cccccccccccCCcccCccccchh Q lcl|Aclame:pro 311 AKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) ..+.++ .++........+. T Consensus 414 ~~~~~~-----~~~~~~~~~~~~~ 432 (432) T protein:vir:97 414 ASPEPA-----SGLGNQQQDKVSK 432 (432) T ss_pred CCCCCC-----CCCCCcccccccC Confidence 011111 1111111111111 No 31 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=99.60 E-value=5.4e-15 Score=98.82 Aligned_cols=298 Identities=12% Similarity=-0.006 Sum_probs=172.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++... |+ +..|.+.+|.++. ...+.+|.+.+.. .. .+..+|...+++.++.. .+.+||.|.+..++ T Consensus 114 ~~~i~r~~~-G~--~~~L~pl~~~~v~-v~~~~~g~~~y~~--~~---~~~~~~~~~vih~r~~~-~d~~~G~s~i~~~~ 183 (419) T protein:vir:57 114 YSLIDRNGR-GD--ITELIPINPHKVI-VLKGPDGMPYYDI--PS---IGEILPMRMVHHIKSFS-LDGYIGTSPIQTNP 183 (419) T ss_pred EEEEEECCC-Cc--EEEEEEEcCcceE-EEECCCceEEEEE--cC---CceEEchhhEEEecCcC-CCCcccccHHHHHH Confidence 677776543 33 7789999998775 4455566554322 11 23457888777777654 45689999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCc-cccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCce Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEA-IARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGAN 156 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~-~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~~ 156 (355) ...-.-....++...+...- +.|-++....... ...+ +...+.+++...+..+| ....++++.|++ T Consensus 184 ~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~~~~~~~--------~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~ 253 (419) T protein:vir:57 184 DVLGLGIAVEQHAAQVFARG--TTMSGVIERPFEAKAIAS--------QAAVDAILAKWTERYGGVRNAFSVGMLQEGMT 253 (419) T ss_pred HHHHHHHHHHHHHHHHHHcc--CCccEEEEecCcCCcccC--------HHHHHHHHHHHHHHhccccccccceecCCCce Confidence 88777667777777777643 4453332221111 1111 11233344333333333 234688999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) ++-++.+.....|.+..++..++|++++..+--..+ ..+.++++-.+-+...+ ...+.-.++.|++.||+.|+..-- T Consensus 254 ~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~- 331 (419) T protein:vir:57 254 YKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQ-DLQKSTNNNIEHQGLQYVIYTMLAILKRHESAMMRDLLLPSE- 331 (419) T ss_pred EEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc- Confidence 988876666667888889999999999888753332 22345666555444444 556788888888888887765321 Q ss_pred hCCCCcccccEEEecCC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCC--ccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAG--RRRAK 312 (355) Q Consensus 236 lNf~~~~~~P~~~~~~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~--~~~~~ 312 (355) ....+.+|.++.. ..|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....+....... ....+ T Consensus 332 ----~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~ 402 (419) T protein:vir:57 332 ----RRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLS-----VNDIRRMENLTPIPGGDKYLTPLNMVDSKALTGIGK 402 (419) T ss_pred ----cCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeeccccccccccccccC Confidence 0112233433333 247788999999999999865 47899999998655555443322211100 00000 Q ss_pred cccccccccCCcccCccccchhHHHHHhH Q lcl|Aclame:pro 313 RLPGQRQGAALPSRSPRADPPRRRGPLRR 341 (355) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (355) +.|... .+.+.....+- T Consensus 403 ~~~~~~------------~~~~~~~~~~~ 419 (419) T protein:vir:57 403 ATPQQL------------KDIEAILCTRN 419 (419) T ss_pred CCcccC------------cchhhhhhccC Confidence 111110 00000000000 No 32 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=99.60 E-value=7e-15 Score=98.19 Aligned_cols=291 Identities=10% Similarity=0.050 Sum_probs=170.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCC--CCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVF--GKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~--g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.+|++... | .|..|.+.+|.+++ ...+.+|++.+..+.... ......+++..+|++++... +..+|.|.+.. T Consensus 135 y~~i~r~~~-G--~~~~L~~i~~~~v~-v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~~-dg~~G~spl~~ 209 (441) T protein:vir:94 135 YIEITRDKT-G--EPMNLTFRKTSEIE-LKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL-DGINGLSLLDT 209 (441) T ss_pred EEEEEECCC-C--cEEEEEEEcCceeE-EEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCCC-CCccccCHHHH Confidence 677777533 3 37789999998775 567788887765442211 11224588888988887654 44799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCc Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGA 155 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~ 155 (355) +....-.-....++...+...- +.|-++..+... ..+++ ..+.+++......+| +...+|++.|+ T Consensus 210 ~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~--~~~~e--------~~e~~r~~~~~~~~G~~nag~~~vl~~G~ 277 (441) T protein:vir:94 210 LSRTIESDNNGKDFLNNFLRNG--THAGGILKMKGV--LDNKK--------ARDRAREEFHKSFSGTKQAGKVVVLDESM 277 (441) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCcEEEEcCCC--CCCHH--------HHHHHHHHHHHHhcCccccCcceecCCCc Confidence 9888777777777777777653 344433333211 11111 112233322222223 22358999999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +++-++.+.....|.+..++..++|++++..+....+.. . ++++..+. +..+...+.-.++.|+..||+.|++.. T Consensus 278 ~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-~-~~~s~~q~-~~~~~~tl~P~~~~ie~eln~kl~~~~-- 352 (441) T protein:vir:94 278 TFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE-T-ANMSITDA-NLDYLSTLKPYITCVCAELNFKFNDEY-- 352 (441) T ss_pred eEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC-C-CCccHHHH-HHHHHHHHHHHHHHHHHHHhhhccccc-- Confidence 998887766666788888999999999988864333322 2 22222221 222344677888888888888664321 Q ss_pred hCCCCcccccEEEecC--CC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc-C----- Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA-A----- 306 (355) Q Consensus 236 lNf~~~~~~P~~~~~~--~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~-~----- 306 (355) ... +|+|+. .. .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++...-...... + T Consensus 353 -----~~~--~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T-----~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~ 420 (441) T protein:vir:94 353 -----VNR--EFKFDTTEIRVVDEKTQAEIDKINIDSGKMN-----IDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVD 420 (441) T ss_pred -----cCc--eEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCcceEeeccccccccccc Confidence 112 455543 22 36788999999999999865 478999999986554443221111110 0 Q ss_pred --CccccccccccccccCCcc Q lcl|Aclame:pro 307 --GRRRAKRLPGQRQGAALPS 325 (355) Q Consensus 307 --~~~~~~~~~~~~~~~~~~~ 325 (355) +.......+....+++... T Consensus 421 ~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 421 EYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccCCCCCCC Confidence 0011111111111122111 No 33 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=99.60 E-value=7e-15 Score=98.19 Aligned_cols=291 Identities=10% Similarity=0.050 Sum_probs=170.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCC--CCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVF--GKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~--g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.+|++... | .|..|.+.+|.+++ ...+.+|++.+..+.... ......+++..+|++++... +..+|.|.+.. T Consensus 135 y~~i~r~~~-G--~~~~L~~i~~~~v~-v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~~-dg~~G~spl~~ 209 (441) T protein:vir:79 135 YIEITRDKT-G--EPMNLTFRKTSEIE-LKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL-DGINGLSLLDT 209 (441) T ss_pred EEEEEECCC-C--cEEEEEEEcCceeE-EEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCCC-CCccccCHHHH Confidence 677777533 3 37789999998775 567788887765442211 11224588888988887654 44799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCc Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGA 155 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~ 155 (355) +....-.-....++...+...- +.|-++..+... ..+++ ..+.+++......+| +...+|++.|+ T Consensus 210 ~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~--~~~~e--------~~e~~r~~~~~~~~G~~nag~~~vl~~G~ 277 (441) T protein:vir:79 210 LSRTIESDNNGKDFLNNFLRNG--THAGGILKMKGV--LDNKK--------ARDRAREEFHKSFSGTKQAGKVVVLDESM 277 (441) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCcEEEEcCCC--CCCHH--------HHHHHHHHHHHHhcCccccCcceecCCCc Confidence 9888777777777777777653 344433333211 11111 112233322222223 22358999999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +++-++.+.....|.+..++..++|++++..+....+.. . ++++..+. +..+...+.-.++.|+..||+.|++.. T Consensus 278 ~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-~-~~~s~~q~-~~~~~~tl~P~~~~ie~eln~kl~~~~-- 352 (441) T protein:vir:79 278 TFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE-T-ANMSITDA-NLDYLSTLKPYITCVCAELNFKFNDEY-- 352 (441) T ss_pred eEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC-C-CCccHHHH-HHHHHHHHHHHHHHHHHHHhhhccccc-- Confidence 998887766666788888999999999988864333322 2 22222221 222344677888888888888664321 Q ss_pred hCCCCcccccEEEecC--CC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc-C----- Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA-A----- 306 (355) Q Consensus 236 lNf~~~~~~P~~~~~~--~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~-~----- 306 (355) ... +|+|+. .. .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++...-...... + T Consensus 353 -----~~~--~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T-----~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~ 420 (441) T protein:vir:79 353 -----VNR--EFKFDTTEIRVVDEKTQAEIDKINIDSGKMN-----IDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVD 420 (441) T ss_pred -----cCc--eEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCcceEeeccccccccccc Confidence 112 455543 22 36788999999999999865 478999999986554443221111110 0 Q ss_pred --CccccccccccccccCCcc Q lcl|Aclame:pro 307 --GRRRAKRLPGQRQGAALPS 325 (355) Q Consensus 307 --~~~~~~~~~~~~~~~~~~~ 325 (355) +.......+....+++... T Consensus 421 ~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 421 EYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccCCCCCCC Confidence 0011111111111122111 No 34 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=99.60 E-value=6.9e-15 Score=98.22 Aligned_cols=302 Identities=12% Similarity=0.026 Sum_probs=175.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE----EEeecCCCCCCceeeCCccEEEEecCCCCCccccchhH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV----AIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLL 76 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~----~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll 76 (355) +.++++.. .|. +..|.+.|+.+++ +..++.+.+. ........| ....+|+..+|++++....+.++|.|.+ T Consensus 118 y~~i~r~~-~G~--~~~L~~i~~~~v~-v~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~evih~~~~~~~~~~~G~s~i 192 (429) T protein:vir:10 118 YANIEFDR-KGK--VQALWPIDASKVT-VYIDDVGLLNSKTKMWYVVNTGG-QQRVLKPEEILHFKNGITLDGLVGVPTM 192 (429) T ss_pred EEEEEECC-CCc--EEEEEEEcCceeE-EEEcCcccccccceEEEEEccCC-eEEEEccccEEEecCCCCCCCcccccHH Confidence 66666643 233 7789999988775 4445443321 111222223 3467899999988877677788999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccC Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPH 153 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~ 153 (355) ..+....-.-....++...+...- +.|-++.+..... +++. . +.+++......+| +...+|++. T Consensus 193 ~~~~~~i~~~~~~~~~~~~~~~ng--~~~~~il~~~~~l---~~e~----~----~~~~~~~~~~~~g~~n~~~~~vl~~ 259 (429) T protein:vir:10 193 EYLKSTLENSASADKFINNFYKQG--LQVKGLVQYVGDL---NEDA----K----KVFRENFESMSSGLQNSHRIALMPV 259 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEEcCCCC---CHHH----H----HHHHHHHHHHhccccccCceeecCC Confidence 999988887777777777787653 3443333332211 1111 1 1222222322222 345789999 Q ss_pred CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVED 232 (355) Q Consensus 154 ~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~ 232 (355) |++++-++.+.....+.+..++..++|++++..+.-..+ ....|+++-.+-+. ......+.-.++.|++.||+.|++. T Consensus 260 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg-~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~ 338 (429) T protein:vir:10 260 GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLN-DLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLD 338 (429) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh Confidence 999998876665566778888999999999988754342 22335565444333 3456677889999999999888654 Q ss_pred HHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccc Q lcl|Aclame:pro 233 LVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRA 311 (355) Q Consensus 233 l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~ 311 (355) --. ....+.+|.++... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++....+.. ..+-.... T Consensus 339 ~~~----~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~ggD~~~~~~n-~~~~d~~~ 408 (429) T protein:vir:10 339 SEL----DKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLK-----PNEARSKEDLPPEAGGDRLLVNGN-MLPIDMAG 408 (429) T ss_pred hhc----CCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeeccc-ccchhhcc Confidence 211 11122233333332 47788999999999999865 478999999986544443322211 11111000 Q ss_pred -ccccccccccCCcccCcccc Q lcl|Aclame:pro 312 -KRLPGQRQGAALPSRSPRAD 331 (355) Q Consensus 312 -~~~~~~~~~~~~~~~~~~~~ 331 (355) ....+.....+.+....+.. T Consensus 409 ~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 409 QAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred ccccCCCCCCCCCCCCCCCCC Confidence 00001111111111100101 No 35 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=99.60 E-value=8.5e-15 Score=97.74 Aligned_cols=291 Identities=10% Similarity=0.049 Sum_probs=170.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCC-C-CCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGV-F-GKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~-~-g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++.. .| .+..|.+.||.+++ ...+.+|++.+...... . +.....+|+..+|++++.. .+.++|.|.+.. T Consensus 110 ~~~i~r~~-~G--~~~~L~~i~~~~v~-v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~ 184 (416) T protein:vir:45 110 YIEITRDK-TG--EPMNLTFRKTSEIE-LKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDT 184 (416) T ss_pred EEEEEECC-CC--cEEEEEEEcCceeE-EEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCC-CCCccccCHHHH Confidence 66777643 23 37789999988775 55677888765443211 1 1122468888998888764 355899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCc Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGA 155 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~ 155 (355) +....-.-....++...+...- +.|-++.++... ..+++. .+.+++.......| +...+|++.|+ T Consensus 185 ~~~~i~~~~~~~~~~~~~f~ng--~~~~gil~~~~~--~~~~~~--------~~~~~~~~~~~~~g~~nag~~~vl~~g~ 252 (416) T protein:vir:45 185 LSRTIESDNNGKDFLNNFLRNG--THAGGILKMKGV--LDNKKA--------RDRAREEFHKSFSGTKQAGKVVVLDESM 252 (416) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCcEEEEeCCC--CCCHHH--------HHHHHHHHHHHhcCccccCceeecCCCc Confidence 9988877777777777777653 344433333221 112111 11222222222222 22358899999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +++-++.+.....|.+..++..++|+.++..+.-..+.. ..+ .+..+. ...+...+.-.+..|+..||+.|.+.. T Consensus 253 ~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-~~~-~~~~~~-~~~~~~~l~P~~~~ie~~ln~~l~~~~-- 327 (416) T protein:vir:45 253 TFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE-TAN-MSITDA-NLDYLSTLKPYITCVCAELNFKFNDEY-- 327 (416) T ss_pred eeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-CCC-ccHHHH-HHHHHHHHHHHHHHHHHHHhhhccccc-- Confidence 998887666666788888999999999988864323322 222 222222 222334677788888888887664321 Q ss_pred hCCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc-C----- Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA-A----- 306 (355) Q Consensus 236 lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~-~----- 306 (355) ... +|+|+ ... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++...-...... + T Consensus 328 -----~~~--~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~ 395 (416) T protein:vir:45 328 -----VNR--EFKFDTTEIRVVDEKTQAEIDKINIDSGKMN-----IDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVD 395 (416) T ss_pred -----cCc--eEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCcceEeeccccccccccc Confidence 112 45554 322 47789999999999999876 478999999986544443221111110 0 Q ss_pred --CccccccccccccccCCcc Q lcl|Aclame:pro 307 --GRRRAKRLPGQRQGAALPS 325 (355) Q Consensus 307 --~~~~~~~~~~~~~~~~~~~ 325 (355) +............+++.+. T Consensus 396 ~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 396 EYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred ccCcccccccccccCCCCCCC Confidence 1111111112222222222 No 36 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=99.60 E-value=8.5e-15 Score=97.74 Aligned_cols=291 Identities=10% Similarity=0.049 Sum_probs=170.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCC-C-CCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGV-F-GKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~-~-g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++.. .| .+..|.+.||.+++ ...+.+|++.+...... . +.....+|+..+|++++.. .+.++|.|.+.. T Consensus 110 ~~~i~r~~-~G--~~~~L~~i~~~~v~-v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~ 184 (416) T protein:vir:81 110 YIEITRDK-TG--EPMNLTFRKTSEIE-LKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDT 184 (416) T ss_pred EEEEEECC-CC--cEEEEEEEcCceeE-EEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCC-CCCccccCHHHH Confidence 66777643 23 37789999988775 55677888765443211 1 1122468888998888764 355899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCc Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGA 155 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~ 155 (355) +....-.-....++...+...- +.|-++.++... ..+++. .+.+++.......| +...+|++.|+ T Consensus 185 ~~~~i~~~~~~~~~~~~~f~ng--~~~~gil~~~~~--~~~~~~--------~~~~~~~~~~~~~g~~nag~~~vl~~g~ 252 (416) T protein:vir:81 185 LSRTIESDNNGKDFLNNFLRNG--THAGGILKMKGV--LDNKKA--------RDRAREEFHKSFSGTKQAGKVVVLDESM 252 (416) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCcEEEEeCCC--CCCHHH--------HHHHHHHHHHHhcCccccCceeecCCCc Confidence 9988877777777777777653 344433333221 112111 11222222222222 22358899999 Q ss_pred eEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 156 ~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +++-++.+.....|.+..++..++|+.++..+.-..+.. ..+ .+..+. ...+...+.-.+..|+..||+.|.+.. T Consensus 253 ~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-~~~-~~~~~~-~~~~~~~l~P~~~~ie~~ln~~l~~~~-- 327 (416) T protein:vir:81 253 TFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE-TAN-MSITDA-NLDYLSTLKPYITCVCAELNFKFNDEY-- 327 (416) T ss_pred eeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-CCC-ccHHHH-HHHHHHHHHHHHHHHHHHHhhhccccc-- Confidence 998887666666788888999999999988864323322 222 222222 222334677788888888887664321 Q ss_pred hCCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc-C----- Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA-A----- 306 (355) Q Consensus 236 lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~-~----- 306 (355) ... +|+|+ ... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++...-...... + T Consensus 328 -----~~~--~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~ 395 (416) T protein:vir:81 328 -----VNR--EFKFDTTEIRVVDEKTQAEIDKINIDSGKMN-----IDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVD 395 (416) T ss_pred -----cCc--eEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCcceEeeccccccccccc Confidence 112 45554 322 47789999999999999876 478999999986544443221111110 0 Q ss_pred --CccccccccccccccCCcc Q lcl|Aclame:pro 307 --GRRRAKRLPGQRQGAALPS 325 (355) Q Consensus 307 --~~~~~~~~~~~~~~~~~~~ 325 (355) +............+++.+. T Consensus 396 ~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 396 EYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred ccCcccccccccccCCCCCCC Confidence 1111111112222222222 No 37 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=99.59 E-value=6.6e-15 Score=98.31 Aligned_cols=297 Identities=13% Similarity=0.078 Sum_probs=172.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++. +|+ +..|.+.++..+. +..+.+|++.+..... .| ....+|.+.++++++....+ .+|.|.+..+. T Consensus 129 yv~i~~~--~g~--~~~L~~l~~~~v~-v~~~~~g~~~y~~~~~-~g-~~~~~~~~~iih~r~~~~dg-~~G~spi~~~~ 200 (432) T protein:vir:81 129 YVRKVVT--DGR--IESLQYLANDRLT-ITTDPKGNTAYRYRRT-DG-QMIDIPKQQIWKIMGYSLDG-ENGLSAIRYGA 200 (432) T ss_pred EEEEEec--CCc--EEEEEEEcCCceE-EEECCCCcEEEEEEec-Cc-eEEEEccccEEEecCCCCCC-cccccHHHHHH Confidence 5666663 454 6788888888775 5667788876644322 23 45678999998888765544 78999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-.-....++-..|... | +.|-++........ ++ +.+ .+++...... .+...++++.|++++-+ T Consensus 201 ~~i~~~~~~~~~~~~~f~n-g-~~~~gil~~~~~l~---~e----~~~----~~~~~~~~~~-nag~~~vl~~g~~~~~l 266 (432) T protein:vir:81 201 QIFGTAIAAEAQAARAFRN-G-QLQSVYYQIDRFLT---DD----QYD----SFAKKVSGSV-EAGRAPLLEGGMDVKSL 266 (432) T ss_pred HHHHHHHHHHHHHHHHHhc-C-CCcceEEecCCCCC---HH----HHH----HHHHHHhhhh-cCCCceecCCCceEEEc Confidence 8877766676676666643 2 45544433322111 11 111 1222222221 22357899999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGD----TFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~----vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) +.+.....|.+..++..++|++++..+--.++ ....|+++.+. .........+.-.++.|+..||+.|++.-- T Consensus 267 ~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg-~~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~-- 343 (432) T protein:vir:81 267 GLNPVDAQLLQSRQYSVESICRFFGVPPSMIG-HSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLSPAE-- 343 (432) T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcC-CcCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-- Confidence 77666667888889999999999888653332 22234443322 222334456677788888888887765421 Q ss_pred CCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccc Q lcl|Aclame:pro 237 NWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 237 Nf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) ... -+|+|+. . ..|.++.++++.++++.|+.. .+++|+.+|+|+-+.+++.........+-+..... T Consensus 344 ---~~~--~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t-----~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~~ 413 (432) T protein:vir:81 344 ---RRR--YFADFDTSALLRADSAARSSYYSQLVNNGLMT-----RDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQ 413 (432) T ss_pred ---cCc--eEEEeechhhhccCHHHHHHHHHHHHhCCCCC-----HHHHHHHhCCCCCCCCcceEeecCcccchhhhccC Confidence 111 2455543 2 247789999999999999865 47999999998765444433222111111110000 Q ss_pred ccccccccCCcccCccccchh Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ 334 (355) +....+.+.....+....+ T Consensus 414 --~~~~~~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 414 --ASPEPASGLGNQQQDKVSK 432 (432) T ss_pred --CCCCCCCCCCCcccccccC Confidence 0000011111111111111 No 38 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=99.59 E-value=1e-14 Score=97.26 Aligned_cols=294 Identities=11% Similarity=0.041 Sum_probs=169.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+++... .|. +..|.+.|+.+++ +..+.+++.+..+.....| ....++...+||+++....+..||.|.+..+. T Consensus 115 y~~i~r~~-~G~--~~~L~~l~~~~v~-v~~~~~~~~~~y~~~~~~g-~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~ 189 (412) T protein:vir:26 115 YVLIERDI-YHQ--PSKLFLLNPDVVE-MLIENQSRELYYSIHAATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLK 189 (412) T ss_pred EEEEEECC-CCc--EEEEEEEcCceeE-EEEeCCCcEEEEEEEcCCc-eEEEEccccEEEeCCCCCCCCcccccHHHHHH Confidence 44554432 343 6688888888775 4555555544334333333 34568899999888765667889999988876 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-..... ..|. ...++.+ +-++...+... +++ ..+ .+++...+...++...++++.|++++-+ T Consensus 190 ~~i~~~~a~-~~~~--~~~~~~~-~~~i~~~~~~l---~~e----~~~----~~~~~~~~~~~~~g~~~vl~~g~~~~~l 254 (412) T protein:vir:26 190 NTTDFDNAV-RTFN--LTEMQKP-DSFMLKYGSNV---GKE----KRQ----QVLEDFKQYYEENGGILFQEPGVEIEPL 254 (412) T ss_pred HHHHHHHHH-HHHH--HHhcCCC-CceEEecCCCC---CHH----HHH----HHHHHHHHHhhcCCCeeecCCCceEEEc Confidence 655544433 3332 2223332 32222222221 111 112 2222222333345568899999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+...++. .+.++++..+-+...+ ...+.-.++.|++.||+.|++..- . T Consensus 255 ~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~-~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~---~- 329 (412) T protein:vir:26 255 PKKYVSEDIVASENLTRERVANVFQLPSVFLNA-RSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTD---R- 329 (412) T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc---c- Confidence 766665678888888899999999887554433 3446777666555444 556888899999999987765420 0 Q ss_pred CcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccc Q lcl|Aclame:pro 240 PEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPG 316 (355) Q Consensus 240 ~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (355) ... -.|+|+. . ..|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....... ..+.. ....... T Consensus 330 ~~~--~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~gl~p~~ggD~~~~~~n-~~~~~-~~~~~~~ 400 (412) T protein:vir:26 330 EKN--RYFKFNVKSYLRADSATQAEVYFKAVRSGYYT-----INDIREWEDLPPVEGGDKPLISGD-LYPID-TPLELRK 400 (412) T ss_pred cCc--ceEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeeccc-ccccc-cchhhcc Confidence 111 2455543 2 247789999999999999875 479999999986554544332211 01100 0011111 Q ss_pred cccccCCcccCc Q lcl|Aclame:pro 317 QRQGAALPSRSP 328 (355) Q Consensus 317 ~~~~~~~~~~~~ 328 (355) ...+++.+.+.. T Consensus 401 ~~~gG~~n~~e~ 412 (412) T protein:vir:26 401 SLKGGDKNVNES 412 (412) T ss_pred cccCCCCCcCCC Confidence 111111111111 No 39 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=99.59 E-value=1.2e-14 Score=96.97 Aligned_cols=297 Identities=12% Similarity=0.066 Sum_probs=171.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++. +|. +..|.+.|+.++. ...+.+|++.+..+. ..| ....++.+.++++++... +..+|.|.+..+. T Consensus 129 y~~~~~~--~g~--~~~L~~l~~~~v~-v~~~~~g~~~y~~~~-~~g-~~~~~~~~~iih~~~~~~-dg~~G~spi~~~~ 200 (432) T protein:vir:10 129 YVRKVVT--DGR--IESLQYLANDRLT-ITTDTKGNTAYRYRR-TDG-QMIDIPKQQIWKIMGYSL-DGENGLSAIRYGA 200 (432) T ss_pred EEEEEec--CCc--EEEEEEEcCCceE-EEEcCCCcEEEEEEe-cCc-eEEEEcCccEEEecCCCC-CCcccccHHHHHH Confidence 6677763 454 6788889888775 556778887664432 233 456789999988876644 3478999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-.-....++...|... | +.|-++.+..... +++ . .+.+++...... .+...++++.|++++-+ T Consensus 201 ~~i~~~~~~~~~~~~~f~n-g-~~~~gil~~~~~l---~~e----~----~~~~~~~~~~~~-nag~~~vl~~g~~~~~l 266 (432) T protein:vir:10 201 QIFGTAIAAEAQAARAFRN-G-QLQSVYYQIDRFL---TDD----Q----YDSFAKKVSGSV-EAGRAPLLEGGMDVKSL 266 (432) T ss_pred HHHHHHHHHHHHHHHHHhc-C-CCcceEEecCCCC---CHH----H----HHHHHHHHhhhh-hCCCceecCCCceEEEc Confidence 8877766666666677653 2 4554444432211 111 1 112222222221 22346889999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGD----TFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~----vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) +.+.....|.+..++...+|++++..+--..+ ....|+++.+. .........+.-.++.|+..||+.|++.-- T Consensus 267 ~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg-~~~~~t~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~-- 343 (432) T protein:vir:10 267 GLNPVDAQLLQSRQYSVESICRFFGVPPSMIG-HSSAGTTSWGSGIESQQLGFLSMTLSPWLRRIEQSIALNLLSPAE-- 343 (432) T ss_pred cCChHHHHHHHHHHHHHHHHHHHhCCCHHHcC-CccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc-- Confidence 77666667888889999999999887643332 22223433222 222334456777788888888887765421 Q ss_pred CCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccc Q lcl|Aclame:pro 237 NWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 237 Nf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) ... -+|+|+. . ..|.++.++.+.++++.|+.. .+++|+.+|+|+-+.+++.........+-+.... T Consensus 344 ----~~~-~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T-----~NE~R~~~glppi~g~~~~~~~~~~~~pl~~~~~- 412 (432) T protein:vir:10 344 ----RRR-YFADFDTSALLRADSAARSSYYSQLVNNGLMT-----RDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGL- 412 (432) T ss_pred ----cCc-eEEEeechhhhccCHHHHHHHHHHHHhCCCCC-----HHHHHHHhCCCCCCCCcceEeecCcccchhhhcc- Confidence 111 1455543 2 247788999999999999765 4799999999876544443322111111110000 Q ss_pred ccccccccCCcccCccccchh Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+....+.++........+. T Consensus 413 -~~~~~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 413 -QASPEPASGLGNQQQDKVSK 432 (432) T ss_pred -cCCCCCCCCCCCcccccccC Confidence 00000001111111111111 No 40 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=99.59 E-value=8.2e-15 Score=97.80 Aligned_cols=288 Identities=10% Similarity=-0.047 Sum_probs=171.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE-----EEeecCCCCCCceeeCCccEEEEecCCCCCccccchh Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV-----AIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSL 75 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~-----~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~l 75 (355) +.++++... |. +..|.+.|+.+++ +..+++|.+. ..+.....| ....+|...+|++++.. .+.++|.|. T Consensus 110 ~~~i~r~~~-G~--~~~L~~i~~~~V~-v~~~~~~~~~~~~~~~y~~~~~~g-~~~~~~~~evih~r~~~-~d~~~G~s~ 183 (409) T protein:vir:10 110 YVALDFKKN-GE--IKGLYPLKSDGMK-IFVDDTGLLNSENNVWYLYTDDLG-QRHKFMSDEILHFKGLT-ADGLAGLSV 183 (409) T ss_pred EEEEEEcCC-Cc--EEEEEEEcCCceE-EEEcCCccccccceEEEEEEeCCc-eeEEeccccEEEecCcC-CCCcccccH Confidence 677777543 33 6789999988775 4455554321 112222222 34578888888877654 456899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEcc Q lcl|Aclame:pro 76 LRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIP 152 (355) Q Consensus 76 l~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p 152 (355) +..+....-.-....++...+...- +.|-++.+..... +++ ..+.+++....+..| ....++++ T Consensus 184 i~~~~~~i~~~~~~~~~~~~~f~ng--~~~~gil~~~~~l---~~e--------~~~~~~~~~~~~~~g~~n~~~~~vl~ 250 (409) T protein:vir:10 184 IELLNHLIENGKSSETYLNNFFKNG--LQVKGLVQYAGDL---NPE--------AEEVFKENFERMSSGLKNAHRIAMLP 250 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CCCcEEEEcCCCC---CHH--------HHHHHHHHHHHHhccccccCCceecC Confidence 9999998877777777777777653 3443333332211 111 122334444444333 23478899 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF-ASFFTGSLNAVMKHIADVTQQHVVE 231 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh-~~v~~~~~~ad~~~i~~~ln~~li~ 231 (355) .|++++-++.+.....|.+..++..++|++++..+.-..+ ..+.++++..+.+ .......+.-.++.|+..||+.|+. T Consensus 251 ~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~kL~~ 329 (409) T protein:vir:10 251 IGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLN-DLDRATHSNITEQNREFYIDTLQSILNMYELEINYKLFL 329 (409) T ss_pred CCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcC-CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 9999998877766677888899999999999888743332 2233556554433 3444556778888888888887643 Q ss_pred HHHHhCCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCc Q lcl|Aclame:pro 232 DLVDQNWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGR 308 (355) Q Consensus 232 ~l~~lNf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~ 308 (355) .-- + ... -+|+|+. . ..|.++.++.+.++++.|+..+ +++|+.+|+|+-+.+|....+.. ..+.. T Consensus 330 ~~~-~---~~~--~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~-----NE~R~~lgl~p~~ggD~~~~~~n-~~~~~ 397 (409) T protein:vir:10 330 ISE-I---KNG--FYSKFNVDTILRADIKTRYESYKEAIQNGFKTP-----NEIRELEEDEPLEGGDVLLINGN-MIPVK 397 (409) T ss_pred chh-c---cCC--cEEEEechhhhccCHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCCCCcCeeeeccC-ccchh Confidence 210 0 011 1355543 2 2477889999999999998764 78999999987544443322211 11000 Q ss_pred cccccccccccccCC Q lcl|Aclame:pro 309 RRAKRLPGQRQGAAL 323 (355) Q Consensus 309 ~~~~~~~~~~~~~~~ 323 (355) .. +.....++.- T Consensus 398 ~~---~~~~~kgGe~ 409 (409) T protein:vir:10 398 MA---GEQYSKGGEK 409 (409) T ss_pred hc---cccccccCCC Confidence 00 0000001110 No 41 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=99.58 E-value=8.9e-15 Score=97.61 Aligned_cols=288 Identities=13% Similarity=0.031 Sum_probs=174.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce------EEEeecCCCCCCceeeCCccEEEEecCCCCCccccch Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL------VAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQS 74 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l------~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ 74 (355) +.++++. +|. +..|.+.||.+++ +..++++.+ .+..+.+..| ....+|...+||+++....+..+|.| T Consensus 111 ~~~i~r~--~g~--~~~l~~l~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~eiih~k~~~~~~~~~G~s 184 (411) T protein:vir:81 111 YVWCQYS--GPQ--LQALWILPSQYVT-IVVDDRGLLGEKNAIWYRYNDPYDG-KMYVFRNDEILHFKTSVTFDGITGLS 184 (411) T ss_pred EEEEEec--CCc--eEEEEEECCceEE-EEEcCcccccccceEEEEEEecCCc-eEEEEccccEEEEcCCCCCCCccccc Confidence 5566654 444 6678888988775 455555432 2222222233 34568999999888766667889999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEc Q lcl|Aclame:pro 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYI 151 (355) Q Consensus 75 ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~ 151 (355) .+..+....-.-....++-..+...- +.|-++.+...... ++ ..+.+++.......| ....+++ T Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~l~---~e--------~~~~~~~~~~~~~~g~~n~g~~~vl 251 (411) T protein:vir:81 185 VRDVLKHTVDGALESQKFMNNLYKTG--LTGKAVLEYTGDLN---QE--------ARDRLVKGFEQFANGSKNAGKIIPV 251 (411) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCC---HH--------HHHHHHHHHHHHhcCccccCCceec Confidence 99999998888888888888888653 34544433322111 11 112233333333333 2346889 Q ss_pred cCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS-FFTGSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 152 p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~-v~~~~~~ad~~~i~~~ln~~li 230 (355) +.|++++-++.+.....|.+..++..++|++++..+.-.++ ....++++..+-+.. .....+.-.+..|++.||++|+ T Consensus 252 ~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ll 330 (411) T protein:vir:81 252 PLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQIN-DYEKSSYASAEAQNLAFYVDTLLYVLKQYEEEITYKIL 330 (411) T ss_pred CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 99999988876655566888889999999999988854342 333467776654443 3455677888888888988776 Q ss_pred HHHHHhCCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCC Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAG 307 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~ 307 (355) +.-. + ... .+|+|+. . ..|.++.++.++++++.|+..+ +++|+.+|+|+-+.+|....... ..+- T Consensus 331 ~~~~-~---~~~--~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~-----NE~R~~~gl~p~~ggD~~~~~~n-~~pl 398 (411) T protein:vir:81 331 SNDL-I---SQG--HYFKFNVNVILRADIKTQMDSLSTAVQNGIMTP-----NEARDYLDMPADDYGNNLMANGN-YIPL 398 (411) T ss_pred Chhh-c---CCC--cEEEeechhhhccCHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCCCCCCeeeeccC-ccch Confidence 5421 0 111 2455543 2 2477889999999999998653 78999999985443333222111 1111 Q ss_pred ccccccccccccccCC Q lcl|Aclame:pro 308 RRRAKRLPGQRQGAAL 323 (355) Q Consensus 308 ~~~~~~~~~~~~~~~~ 323 (355) .. .+.....+++. T Consensus 399 ~~---~~~~~~kgGd~ 411 (411) T protein:vir:81 399 SM---LGANYGKGGDS 411 (411) T ss_pred hh---hhhhhccCCCC Confidence 11 00111111221 No 42 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=99.58 E-value=4.8e-15 Score=99.06 Aligned_cols=298 Identities=10% Similarity=-0.033 Sum_probs=173.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++... | .+..|.+.++.+++ +..+.++++.+.. .+ . ..+|.+-+++.++... +.+||.|.+..+. T Consensus 114 ~~~i~r~~~-G--~~~~L~~i~~~~v~-i~~~~~~~~~y~~-~~---~--~~~~~~~i~h~~~~~~-d~~~G~s~i~~~~ 182 (419) T protein:vir:80 114 YSFIDRDQD-G--VIQGLYPLDNEAVT-VMKGPDLKPMYRV-AG---A--DPLPQRLVHHVRWMSI-NGYTGLSPVLLHA 182 (419) T ss_pred EEEEEECCC-C--cEEEEEEecCceEE-EEECCCceEEEEE-cC---c--cccchhheEEecCCCC-CCcccccHHHHHH Confidence 667766543 3 37889999998775 4566677665432 22 1 2366666666666554 4589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCc-cccchhhHHHHHHHHHHHHHHHHHHHhcCC---ceeEEccCCce Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEA-IARDTARAEQWLNDQKEEGLQLAKEFRAGE---AAGGYIPHGAN 156 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~-~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~---~~~~v~p~~~~ 156 (355) ...-.-....++...+...- +.|-++.+..... ...+. +..+.+++......+|. ...++++.|++ T Consensus 183 ~~i~~~~~~~~~~~~~f~ng--~~~~gil~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~ 252 (419) T protein:vir:80 183 NAIGHAQAIQQYAGKSFMNG--TALSGVIERPTDAPALKDQ--------ASVDRITDGWNAKFGGSGNAKKVALLQEGMK 252 (419) T ss_pred HHHHHHHHHHHHHHHHHhcC--CCccEEEEecCCCCcccCH--------HHHHHHHHHHHHHhcCccccCCceecCCCce Confidence 88777777777777777753 4453333222111 11111 12333444444444442 33688999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) ++-++.+.....|.+..++..++|+.++..+.-..+ ....++++-.+-+. ......+.-.++.|+..||+.|+.+--. T Consensus 253 ~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg-~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~ 331 (419) T protein:vir:80 253 FKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER 331 (419) T ss_pred EEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhc-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc Confidence 888876655566888889999999999888754332 22345665554443 3345567888899999999877654211 Q ss_pred hCCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAK 312 (355) Q Consensus 236 lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~ 312 (355) ... .|+|+ ... .|.++.++.++++++.|++. .+++|+.+|+|+-+.+|....+..-. ... T Consensus 332 -----~~~--~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~g~~p~~gGD~~~~~~n~~--~~~--- 394 (419) T protein:vir:80 332 -----KQY--FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLS-----INDIRRLENMPPVKGGDIYLSPMNMV--DAS--- 394 (419) T ss_pred -----CCe--EEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceeeeccccc--ccc--- Confidence 111 34554 322 37789999999999999876 47899999998765555433221110 000 Q ss_pred cccccccccCCcccCccccchhHHHHHhHhhhchHHhhhc Q lcl|Aclame:pro 313 RLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCA 352 (355) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (355) .+.....+. .. ..+ ...+... |..+ T Consensus 395 -~~~~~~~~~--~~---~~~-~~~~~~~--------~~l~ 419 (419) T protein:vir:80 395 -KPQPIPMGK--TE---PTK-AALDEIG--------RILS 419 (419) T ss_pred -ccccccCCC--CC---chh-hhHHHHH--------hhcC Confidence 000000000 00 000 0101111 1111 No 43 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=99.58 E-value=1.3e-14 Score=96.74 Aligned_cols=288 Identities=12% Similarity=-0.004 Sum_probs=173.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++. +|. +..|.+.++.+++ +..+.+|++.+.... ..| ..+.++...+||+++.. .+.++|.|.+..+. T Consensus 137 ~~~i~r~--~g~--~~~L~pl~~~~v~-~~~~~~~~~~y~~~~-~~g-~~~~~~~~dViHir~~~-~dg~~G~spi~~~~ 208 (431) T protein:vir:10 137 MARIVWS--GNR--PIRLIPMDRGSAK-GRLTSTWQIVYDYTT-PTG-DKIELPAREVFHLRDLS-IDGVSGVSRVKLSG 208 (431) T ss_pred EEEEEEc--CCc--eEEEEEEcCceeE-EEEcCCCeEEEEEEe-CCc-eEEEEchhhEEEecCcC-CCCcccccHHHHHH Confidence 7788874 343 5678888888775 556777777654332 233 34678988888887654 45589999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCceE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGANF 157 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~~i 157 (355) ...-.-....++...+...- +.|-++.++....+ ++ ..+.+++...+..+| ....+|++.|+++ T Consensus 209 ~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~ls---~e--------~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~ 275 (431) T protein:vir:10 209 NALELAEQAERAASRTFRTG--VMAGGAIEVPKELS---DN--------AYGRMKASVQENHTGSENAGSWMLLEEGATA 275 (431) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccEEEecCCCCC---HH--------HHHHHHHHHHHHhcCccccCCceecCCCceE Confidence 88777777777777777643 34543333322111 11 122343444433333 2345899999999 Q ss_pred EEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 158 TLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 158 e~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) +-++.+.....|.+.-++-.++|++++..+.-..+. ..+++++-.+-+. .....-+.-.++.|++.||+.|++.-.. T Consensus 276 ~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~-~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~- 353 (431) T protein:vir:10 276 KQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMM-DDTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKML- 353 (431) T ss_pred EEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhc- Confidence 888766655668788888899999998886543432 2334555444333 3445567888889999999877654211 Q ss_pred CCCCcccccEEEecCC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC--ccccccccccccCCcccccc Q lcl|Aclame:pro 237 NWGPEEPAPRLVPAQL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE--RDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 237 Nf~~~~~~P~~~~~~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~--~~~~~~~~~~~~~~~~~~~~ 313 (355) ...+.+|.++.. ..|.++.++.+++++.+|+... -.+.+++|+.+|+|+-+. +|....+...... .... T Consensus 354 ----~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g-~lT~NE~R~~~gl~p~~~~~gD~~~~p~n~~~~---~~~~ 425 (431) T protein:vir:10 354 ----GQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSP-WMKQNEVREMLDLPRADDPVADQLRNPMTQKQK---GSGD 425 (431) T ss_pred ----CCceEEEechhhhccCHHHHHHHHHHHHhcccccC-ccCHHHHHHHhCCCCCCCccccceecccccccC---CCCC Confidence 122233433332 2477899999999999987421 124689999999986433 3322221111100 0000 Q ss_pred ccccccccCCcccCcccc Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRAD 331 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~~ 331 (355) .+ |+.. T Consensus 426 ~~------------p~~~ 431 (431) T protein:vir:10 426 EP------------PATT 431 (431) T ss_pred CC------------CCCC Confidence 00 0000 No 44 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=99.58 E-value=1.2e-14 Score=97.00 Aligned_cols=294 Identities=10% Similarity=0.022 Sum_probs=167.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++.. .|. +..|.+.|+.+++ +..+.+++.+..+.....| ..+.+|...+||+++....+..||.|.+..+. T Consensus 112 y~~i~r~~-~G~--~~~L~~l~~~~v~-~~~~~~~~~~~y~~~~~~g-~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~ 186 (409) T protein:vir:93 112 YVLIERDI-YHQ--PSKLFLLNPDVVE-MLIENQSRELYYSIHAATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLK 186 (409) T ss_pred EEEEEECC-CCc--EEEEEEEcCceeE-EEEeCCCcEEEEEEEcCCc-eEEEEccccEEEeCCCCCCCccccccHHHHHH Confidence 45555532 233 7788899988775 4455555543333333333 34568999999888665567788999988776 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-......+ +. .-.++.+ +-++...+... +.+ ..+..++.+. +...++...++++.|++++-+ T Consensus 187 ~~i~~~~~~~~-~~--~~~~~~~-~~~i~~~~~~l---~~e----~~~~~~~~~~----~~~~~~g~~~vl~~g~~~~~l 251 (409) T protein:vir:93 187 NTTDFDNAVRT-FN--LTEMQKP-DSFMLKYGSNV---GKE----KRQQVLEDFK----QYYEENGGILFQEPGVEIEPL 251 (409) T ss_pred HHHHHHHHHHH-HH--HHhcCCC-CceEEecCCCC---CHH----HHHHHHHHHH----HHhhcCCCeeecCCCceEEEc Confidence 65554443333 22 2223333 22222222221 111 1122222222 222344567899999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS-FFTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+.-..+ ..++++++..+-+.. ....-+.-.++.|++.||+.|++..- . T Consensus 252 ~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg-~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~---~- 326 (409) T protein:vir:93 252 PKKYVSEDIVASENLTRERVANVFQLPSVFLN-ARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTD---R- 326 (409) T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc---c- Confidence 76665567888888999999999988754443 233456666555443 44557788888999999987776421 0 Q ss_pred CcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccc Q lcl|Aclame:pro 240 PEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPG 316 (355) Q Consensus 240 ~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (355) ... -.|+|+. . ..|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....... ..+-. ....... T Consensus 327 ~~~--~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~g~~p~~ggD~~~~~~n-~~~~~-~~~~~~~ 397 (409) T protein:vir:93 327 EKN--RYFKFNVKSYLRADSATQAEVYFKAVRSGYYT-----INDIREWEDLPPVEGGDKPLISGD-LYPID-TPLELRK 397 (409) T ss_pred cCc--ceEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeeccc-ccccc-cchhhcc Confidence 111 2455543 2 246788999999999999865 479999999986544444332111 11110 0011111 Q ss_pred cccccCCcccCc Q lcl|Aclame:pro 317 QRQGAALPSRSP 328 (355) Q Consensus 317 ~~~~~~~~~~~~ 328 (355) ...++..+.+.. T Consensus 398 ~~~gG~~n~~e~ 409 (409) T protein:vir:93 398 SLKGGDKNVNES 409 (409) T ss_pred cccCCCCCcCCC Confidence 111111111111 No 45 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=99.58 E-value=1.4e-14 Score=96.55 Aligned_cols=300 Identities=13% Similarity=0.035 Sum_probs=173.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++. +|. +..|.+.+|.+++ +..+.+|++.+..+.. .| ....+++..+|++++.. .+.++|.|.+..+. T Consensus 124 y~~i~r~--~g~--~~~L~~l~p~~v~-i~~~~~g~~~y~~~~~-~g-~~~~~~~~dIih~r~~~-~d~~~G~spi~~~~ 195 (437) T protein:vir:10 124 YARKLRS--AGV--LIGLELMLPQRTT-VKRLTSGALQYTYRNV-DG-TVSTLAEDDVFHVRGFS-LDGLMGLTPIQYAR 195 (437) T ss_pred EEEEEec--CCc--EEEEEEEcCcceE-EEECCCCeEEEEEEec-Cc-eEEEEccccEEEecCcC-CCCcccccHHHHHH Confidence 6666664 353 6678888888775 5566778776654432 33 34578888888877654 45689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCceE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGANF 157 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~~i 157 (355) ...-.-....++-..+...- +.|-++....... +++ ..+ .+++.......| +...+|++.|+++ T Consensus 196 ~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~l---~~e----~~~----~~~~~~~~~~~g~~nag~~~vl~~g~~~ 262 (437) T protein:vir:10 196 EVLGNSTAANKTSASVFRNG--LRPSGVLSTDQIL---QKE----KRA----EIRTDLAEQFGGAMQAGKTMVLEAGMKY 262 (437) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccEEEEcCCCC---CHH----HHH----HHHHHHHHHhcCccccCcceeccCCceE Confidence 88877777777777777753 3443333332211 111 111 222222222222 2346889999998 Q ss_pred EEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 158 TLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY--A-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 158 e~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~--A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +-++.+.....|.+..++..++|++++..+--..+ ....+|+ + ..+........-+.-.+..|+..||+.|++.- T Consensus 263 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~- 340 (437) T protein:vir:10 263 QAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVG-HSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPG- 340 (437) T ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc- Confidence 88876666667888889999999999888754332 2222332 2 22333345566678888889999988776431 Q ss_pred HhCCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccC----- Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAA----- 306 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~----- 306 (355) .... -.|+|+ ..- .|.++.+++++++++.|+.. .+++|+.+|+|+-+.+++.........+ T Consensus 341 -----e~~~-~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~~~ 409 (437) T protein:vir:10 341 -----ERDQ-FYAEFSVEGLLRADSAGRAAFYSTMTQNGLMT-----RDECRAKENLPPMGGNAAVLTVQSALLPIDKLG 409 (437) T ss_pred -----ccCc-eEEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCcceEeecCcccchhhcc Confidence 1111 134554 322 36789999999999999865 4789999999865444433321111111 Q ss_pred CccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 307 GRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.....+.....+++.......+.+.. T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 437 (437) T protein:vir:10 410 EHTTATAAQDALKAWLYQEEKTRATQER 437 (437) T ss_pred CcCCCcchhccccccCCCCCCCCccccC Confidence 1111111111111111111111111111 No 46 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=99.58 E-value=1.3e-14 Score=96.72 Aligned_cols=298 Identities=11% Similarity=-0.026 Sum_probs=170.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++.. +| .+..|.+.+|.+++ +..+.+|++.+..+ +. . .+|.+-+++.++... +..+|.|.+..+. T Consensus 114 ~~~i~r~~-~G--~~~~l~pl~~~~v~-v~~~~~~~~~y~~~-~~---~--~~~~~~i~h~~~~~~-dg~~G~s~i~~~~ 182 (419) T protein:vir:14 114 YSFIDRDS-DG--VIQGLYPLDNEAVT-VMRGSDLKPVYRVR-GS---D--PMPQRLVHHVRWMSI-NGYTGLSPVLLHA 182 (419) T ss_pred EEEEEECC-CC--cEEEEEEecCceEE-EEECCCceEEEEEc-cC---c--ccchhheeEecCcCC-CCcccccHHHHHH Confidence 66666643 24 37789999998775 45577777665432 21 1 255555665555544 5589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCc-cccchhhHHHHHHHHHHHHHHHHHHHhcCC---ceeEEccCCce Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEA-IARDTARAEQWLNDQKEEGLQLAKEFRAGE---AAGGYIPHGAN 156 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~-~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~---~~~~v~p~~~~ 156 (355) ...-.-....++...+...- +.|-++..+.... ...+. +..+.+++.......|. ...++++.|++ T Consensus 183 ~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~ 252 (419) T protein:vir:14 183 NAIGHAQAIQQYAGKSFMNG--TALSGVIERPKDAPALKDQ--------ASVDRITDGWNAKFGGSGNAKKVALLQEGMT 252 (419) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccEEEEecCCCCcccCH--------HHHHHHHHHHHHHhcCccccCCceecCCCce Confidence 88777777777777777642 3443222221111 11111 12333444444444442 23588999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASF-FTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) ++-++.+.....|.+..++..++|++++..+--..+ ....++++-.+-+... ....+.-.++.|++.||+.|+..-- T Consensus 253 ~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg-~~~~~t~s~~E~~~~~f~~~~L~P~~~~ie~~l~~kll~~~~- 330 (419) T protein:vir:14 253 FRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE- 330 (419) T ss_pred EEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhc-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc- Confidence 888876655556788888999999999888754332 2234566654444333 3557778888888888887754321 Q ss_pred hCCCCcccccEEEec--CC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPA--QL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAK 312 (355) Q Consensus 236 lNf~~~~~~P~~~~~--~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~ 312 (355) ...+ +++|+ .. ..|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....+..-.. ..... T Consensus 331 -----~~~~-~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~gGD~~~~~~n~~~-~~~~~- 397 (419) T protein:vir:14 331 -----RKQY-FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLS-----INDIRRLENMPPVKGGDIYLSPMNMVD-ASKPQ- 397 (419) T ss_pred -----cCCe-EEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeecccccc-ccccc- Confidence 1111 35554 32 247789999999999999875 478999999986555554333211110 00000 Q ss_pred cccccccccCCcccCccccchhHHHHHh Q lcl|Aclame:pro 313 RLPGQRQGAALPSRSPRADPPRRRGPLR 340 (355) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (355) ..+... .....+...+....+. T Consensus 398 ~~~~~~------~~~~~~~~~e~~~~l~ 419 (419) T protein:vir:14 398 QLPVGK------SEPTKAAIDEIGRILS 419 (419) T ss_pred cccCCC------CCCccccccchhcccC Confidence 000000 0000001001100000 No 47 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=99.58 E-value=9.4e-15 Score=97.49 Aligned_cols=288 Identities=12% Similarity=0.003 Sum_probs=172.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++.. +|+ +..|.+.+|.+++ ... .++++.+..+ ..| ....++++.+|++++.. .+..+|.|.+..+. T Consensus 131 y~~i~r~~-~G~--~~~L~~l~~~~v~-v~~-~~~~~~y~~~--~~g-~~~~~~~~eVihir~~~-~dg~~G~spi~~~~ 201 (424) T protein:vir:18 131 YALVDRNS-AGD--VISLLPLQSANMD-VKL-VGKKVVYRYQ--RDS-EYADFSQKEIFHLKGFG-FTGLVGLSPIAFAC 201 (424) T ss_pred EEEEEECC-CCc--EEEEEEecCcceE-EEE-cCCeEEEEEE--eCC-eEEEeccccEEEecCcC-CCCcccccHHHHHH Confidence 66676643 344 6788888888775 333 3445544322 223 34578899988887654 45589999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCceEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGANFT 158 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~ie 158 (355) ...-.-....++...+...- +.|-++...+... .+. +..+.+++..+.+.+|.. ..++++.|++++ T Consensus 202 ~~i~~~~~~~~~~~~~f~ng--~~~~gil~~~~~~--l~~--------e~~~~~~~~~~~~~~~~nag~~~vl~~g~~~~ 269 (424) T protein:vir:18 202 KSAGVAVAMEDQQRDFFANG--AKSPQILSTGEKV--LTE--------QQRSQVEENFKEIAGGPVKKRLWILEAGFSTS 269 (424) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCcceEEEeCCcC--CCH--------HHHHHHHHHHHHHhCCcccCCceeccCCceEE Confidence 88777677777777777643 3453333332211 111 122334444455444433 358999999999 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY--A-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~--A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) -++.+.....|.+..++...+|++++..+.-.++ ...++|+ + ..+-........+.-.++.|+..||+.|++.-- T Consensus 270 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~- 347 (424) T protein:vir:18 270 AIGVTPQDAEMMASRKFQVSELARFFGVPPHLVG-DVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPSKD- 347 (424) T ss_pred ecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhC-CCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc- Confidence 8887766677888899999999999888754342 2223333 2 233344555777888899999999988865420 Q ss_pred hCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRL 314 (355) Q Consensus 236 lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (355) ....+.+|.++..- .|.++.++.+.++++.|+.. .+++|+.+|+|+-+.+|+......- .+...-.... T Consensus 348 ----~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~ggD~~~~~~n~-~~l~~~~~~~ 417 (424) T protein:vir:18 348 ----VGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRT-----INEMRRTDNMPPLPGGDVAMRQAQY-VPITDLGTNK 417 (424) T ss_pred ----cCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeeccCc-cchhhhhccC Confidence 11222334333332 47789999999999999876 4789999999865444433222111 0100000000 Q ss_pred cccccccCCc Q lcl|Aclame:pro 315 PGQRQGAALP 324 (355) Q Consensus 315 ~~~~~~~~~~ 324 (355) +... .+. T Consensus 418 ~~~~---n~a 424 (424) T protein:vir:18 418 EPRN---NGA 424 (424) T ss_pred Cccc---cCC Confidence 0000 000 No 48 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=99.57 E-value=2.1e-14 Score=95.55 Aligned_cols=294 Identities=11% Similarity=0.034 Sum_probs=166.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.++++.. .|. +..|.+.||.+++ +..+.+++.+..+.....| ..+.+|...+|++++....+..+|.|.+..+. T Consensus 112 y~~i~r~~-~G~--~~~L~~l~~~~v~-v~~~~~~~~~~y~~~~~~g-~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~ 186 (409) T protein:vir:94 112 YVLIERDI-YHQ--PSKLFLLNPDVVE-MLIENQSRELYYSIHAATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLK 186 (409) T ss_pred EEEEEECC-CCc--EEEEEEEcCceeE-EEEeCCCcEEEEEEEcCCc-eEEEEccccEEEecCCCCCCccccccHHHHHH Confidence 44555432 333 6788889888775 4455555544333333333 34568888888888665567788999988876 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-...... .|. ...++.+ +-++...+... +.+ ..+ .+++...+...++...++++.|++++-+ T Consensus 187 ~~i~~~~~~~-~~~--~~~~~~~-~~~i~~~~~~l---~~e----~~~----~~~~~~~~~~~~~g~~~vl~~g~~~~~l 251 (409) T protein:vir:94 187 NTTDFDNAVR-TFN--LTEMQKP-DSFMLKYGSNV---GKE----KRQ----QVLEDFKQYYEENGGILFQEPGVEIEPL 251 (409) T ss_pred HHHHHHHHHH-HHH--HHhcCCC-CeeEEecCCCC---CHH----HHH----HHHHHHHHHhhcCCCeeecCCCceEEEc Confidence 6655544433 332 2223333 22222222221 111 112 2222223333345567899999999988 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASF-FTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+.-..+. .+.++++-.+-+... ...-+.-.++.|++.||+.|++.. T Consensus 252 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~Ll~~~------ 324 (409) T protein:vir:94 252 PKKYVSEDIVASENLTRERVANVFQLPSVFLNA-RSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT------ 324 (409) T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ Confidence 766666678888889999999999887544432 234566655544433 355677888888888988776642 Q ss_pred CcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccc Q lcl|Aclame:pro 240 PEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPG 316 (355) Q Consensus 240 ~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (355) ....-..|+|+. . ..|.++.++++.++++.|+.. .+++|+.+|+|+-+.+|....... ..+-... ..... T Consensus 325 ~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~g~~p~~ggD~~~~~~n-~~~~~~~-~~~~~ 397 (409) T protein:vir:94 325 DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYT-----INDIREWEDLPPVEGGDKPLISGD-LYPIDTP-LELRK 397 (409) T ss_pred cccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeEeeccc-ccccccc-hhhcc Confidence 011112455543 2 247788999999999999865 478999999986544443322111 1111000 00011 Q ss_pred cccccCCcccCc Q lcl|Aclame:pro 317 QRQGAALPSRSP 328 (355) Q Consensus 317 ~~~~~~~~~~~~ 328 (355) ...+++.+.+.. T Consensus 398 ~~kGG~~n~~e~ 409 (409) T protein:vir:94 398 SLKGGDKNVNES 409 (409) T ss_pred cccCCCCCcCCC Confidence 111111111111 No 49 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=99.56 E-value=1.2e-14 Score=96.99 Aligned_cols=286 Identities=12% Similarity=0.005 Sum_probs=171.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++... |. +..|.+.+|.++. ... .++++.+..+. .| ....+|++.+|++++.. .+.++|.|.+..+. T Consensus 131 y~~i~r~~~-G~--~~~L~pl~~~~V~-v~~-~~~~~~y~~~~--~g-~~~~~~~~eIih~r~~~-~dg~~G~spi~~~~ 201 (424) T protein:vir:18 131 YALVDRNSA-GD--VISLLPLQSANMD-VKL-VGKKVVYRYQR--DS-EYADFSQKEIFHLKGFG-FTGLVGLSPIAFAC 201 (424) T ss_pred EEEEEECCC-Cc--EEEEEEecCcceE-EEE-cCCeEEEEEEe--CC-eEEEeccccEEEecCcC-CCCcccccHHHHHH Confidence 677877543 43 6778888888775 332 24455443322 23 34578999988887654 45589999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCceEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGANFT 158 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~ie 158 (355) ...-.-....++...|...- +.|-++....... .++ +..+.+++....+.+|.+ ..++++.|++++ T Consensus 202 ~~i~~~~a~~~~~~~~f~ng--~~p~gil~~~~~~--l~~--------e~~~~~~~~~~~~~~g~nag~~~vl~~g~~~~ 269 (424) T protein:vir:18 202 KSAGVAVAMEDQQRDFFANG--AKSPQILSTGEKV--LTE--------QQRSQVEENFKEIAGGPVKKRLWILEAGFSTS 269 (424) T ss_pred HHHHHHHHHHHHHHHHHHcc--CCcceEEEeCCcC--CCH--------HHHHHHHHHHHHHhCCcccCCceeccCCceEE Confidence 87776666667777777643 3443333322111 111 122334444455444433 368999999999 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY--A-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~--A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) -++.+.....|.+..++..++|++++..+--..+ ...++++ + .-+.........+.-.++.|++.||+.|++..- T Consensus 270 ~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~- 347 (424) T protein:vir:18 270 AIGVTPQDAEMMASRKFQVSELARFFGVPPHLVG-DVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPAKD- 347 (424) T ss_pred ecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc- Confidence 8887766667888889999999999988754332 2222332 2 122333455667888999999999988876521 Q ss_pred hCCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAK 312 (355) Q Consensus 236 lNf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~ 312 (355) .... +|+|+. . ..|.++.++.+.++++.|+.. .+++|+.+|+|+-+.+|.......-. +... T Consensus 348 ----~~~~--~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~gGD~~~~~~n~~-~l~~--- 412 (424) T protein:vir:18 348 ----VGRI--HAEHNLDGLLRGDSASRAAFMKAMGEAGLRT-----INEMRRTDNLPPLPGGDVAMRQSQYV-PITD--- 412 (424) T ss_pred ----cCCe--EEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcCeeeeccCcc-chHh--- Confidence 1122 345543 2 247788999999999999876 47899999998654444332221111 1000 Q ss_pred cccccccccCCc Q lcl|Aclame:pro 313 RLPGQRQGAALP 324 (355) Q Consensus 313 ~~~~~~~~~~~~ 324 (355) .+........+. T Consensus 413 ~~~~~~p~~~ga 424 (424) T protein:vir:18 413 LGTNKEPRNNGA 424 (424) T ss_pred hhccCCCccCCC Confidence 000000000000 No 50 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=99.56 E-value=3.4e-14 Score=94.42 Aligned_cols=302 Identities=12% Similarity=0.029 Sum_probs=173.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE----EEeecCCCCCCceeeCCccEEEEecCCCCCccccchhH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV----AIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLL 76 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~----~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll 76 (355) +.++++... |. +..|.+.++.+++ +..++.+.+. ........| ....+|+..+|++++....+..+|.|.+ T Consensus 121 y~~i~r~~~-G~--~~~L~~i~~~~v~-v~~d~~~~~~~~~~~~y~~~~~g-~~~~~~~~eiih~r~~~~~~~~~G~s~~ 195 (432) T protein:vir:10 121 YANIEFDRK-GK--VQALWPIDASKVT-VYIDDVGLLNSKTKMWYVVNTGG-QQRVLKPEEILHFKNGITLDGLVGVPTM 195 (432) T ss_pred EEEEEECCC-Cc--EEEEEEEcCceeE-EEEcCcccccccceEEEEEecCC-eEEEEccccEEEecCCCCCCCcccccHH Confidence 667777433 33 7788889888775 4444433211 111112223 3467899999988876666778999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccC Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPH 153 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~ 153 (355) ..+....-.-....++-..+...- +.|-++.+.... -+++ . .+.+++......+| +...++++. T Consensus 196 ~~~~~~i~~~~~~~~~~~~~~~ng--~~p~gil~~~~~---l~~e----~----~~~~~~~~~~~~~g~~n~~~~~vl~~ 262 (432) T protein:vir:10 196 EYLKSTLENSASADKFINNFYKQG--LQVKGLVQYVGD---LNED----A----KKVFRENFESMSSGLQNSHRIALMPV 262 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEEcCCC---CCHH----H----HHHHHHHHHHHhcccccCCcceecCC Confidence 999888877777777777777643 344333333221 1111 1 12233333333222 345689999 Q ss_pred CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVED 232 (355) Q Consensus 154 ~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~ 232 (355) |++++-++.+.....|.+..++..++|++++..+.-..+ ....|+++-.+-+. ......+.-.++.|+..||+.|++. T Consensus 263 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg-~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~ 341 (432) T protein:vir:10 263 GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLN-DLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLD 341 (432) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh Confidence 999998876665566888889999999999888754442 22345666444333 3446677888999999999888754 Q ss_pred HHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccc Q lcl|Aclame:pro 233 LVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRA 311 (355) Q Consensus 233 l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~ 311 (355) -- . ....+.+|.++... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++....+.. ..+-.... T Consensus 342 ~~-~---~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~g~~pi~ggD~~~~~~n-~~~~~~~~ 411 (432) T protein:vir:10 342 SE-L---DKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLK-----PNEARSKEDLPPEAGGDRLLVNGN-MLPIDMAG 411 (432) T ss_pred hh-c---CCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeEeeccc-ccchhhcc Confidence 21 1 11122233333332 37788999999999999875 478999999986444443222211 11111000 Q ss_pred c-cccccccccCCcccCccccch Q lcl|Aclame:pro 312 K-RLPGQRQGAALPSRSPRADPP 333 (355) Q Consensus 312 ~-~~~~~~~~~~~~~~~~~~~~~ 333 (355) . ..++.....+.+....+. . T Consensus 412 ~~~~k~~~~~~~~~~~~~~~--~ 432 (432) T protein:vir:10 412 QAYLKGGDTNGEVSKEGNEG--N 432 (432) T ss_pred ccccCCCCCCCCCCCCCCCC--C Confidence 0 000111101110000000 0 No 51 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=99.56 E-value=3.4e-14 Score=94.42 Aligned_cols=302 Identities=12% Similarity=0.029 Sum_probs=173.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE----EEeecCCCCCCceeeCCccEEEEecCCCCCccccchhH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV----AIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLL 76 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~----~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll 76 (355) +.++++... |. +..|.+.++.+++ +..++.+.+. ........| ....+|+..+|++++....+..+|.|.+ T Consensus 121 y~~i~r~~~-G~--~~~L~~i~~~~v~-v~~d~~~~~~~~~~~~y~~~~~g-~~~~~~~~eiih~r~~~~~~~~~G~s~~ 195 (432) T protein:vir:10 121 YANIEFDRK-GK--VQALWPIDASKVT-VYIDDVGLLNSKTKMWYVVNTGG-QQRVLKPEEILHFKNGITLDGLVGVPTM 195 (432) T ss_pred EEEEEECCC-Cc--EEEEEEEcCceeE-EEEcCcccccccceEEEEEecCC-eEEEEccccEEEecCCCCCCCcccccHH Confidence 667777433 33 7788889888775 4444433211 111112223 3467899999988876666778999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccC Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPH 153 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~ 153 (355) ..+....-.-....++-..+...- +.|-++.+.... -+++ . .+.+++......+| +...++++. T Consensus 196 ~~~~~~i~~~~~~~~~~~~~~~ng--~~p~gil~~~~~---l~~e----~----~~~~~~~~~~~~~g~~n~~~~~vl~~ 262 (432) T protein:vir:10 196 EYLKSTLENSASADKFINNFYKQG--LQVKGLVQYVGD---LNED----A----KKVFRENFESMSSGLQNSHRIALMPV 262 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEEcCCC---CCHH----H----HHHHHHHHHHHhcccccCCcceecCC Confidence 999888877777777777777643 344333333221 1111 1 12233333333222 345689999 Q ss_pred CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVED 232 (355) Q Consensus 154 ~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~ 232 (355) |++++-++.+.....|.+..++..++|++++..+.-..+ ....|+++-.+-+. ......+.-.++.|+..||+.|++. T Consensus 263 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg-~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~ 341 (432) T protein:vir:10 263 GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLN-DLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLD 341 (432) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh Confidence 999998876665566888889999999999888754442 22345666444333 3446677888999999999888754 Q ss_pred HHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccc Q lcl|Aclame:pro 233 LVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRA 311 (355) Q Consensus 233 l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~ 311 (355) -- . ....+.+|.++... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++....+.. ..+-.... T Consensus 342 ~~-~---~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~g~~pi~ggD~~~~~~n-~~~~~~~~ 411 (432) T protein:vir:10 342 SE-L---DKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLK-----PNEARSKEDLPPEAGGDRLLVNGN-MLPIDMAG 411 (432) T ss_pred hh-c---CCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeEeeccc-ccchhhcc Confidence 21 1 11122233333332 37788999999999999875 478999999986444443222211 11111000 Q ss_pred c-cccccccccCCcccCccccch Q lcl|Aclame:pro 312 K-RLPGQRQGAALPSRSPRADPP 333 (355) Q Consensus 312 ~-~~~~~~~~~~~~~~~~~~~~~ 333 (355) . ..++.....+.+....+. . T Consensus 412 ~~~~k~~~~~~~~~~~~~~~--~ 432 (432) T protein:vir:10 412 QAYLKGGDTNGEVSKEGNEG--N 432 (432) T ss_pred ccccCCCCCCCCCCCCCCCC--C Confidence 0 000111101110000000 0 No 52 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=99.56 E-value=3.4e-14 Score=94.42 Aligned_cols=302 Identities=12% Similarity=0.029 Sum_probs=173.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE----EEeecCCCCCCceeeCCccEEEEecCCCCCccccchhH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV----AIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLL 76 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~----~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll 76 (355) +.++++... |. +..|.+.++.+++ +..++.+.+. ........| ....+|+..+|++++....+..+|.|.+ T Consensus 121 y~~i~r~~~-G~--~~~L~~i~~~~v~-v~~d~~~~~~~~~~~~y~~~~~g-~~~~~~~~eiih~r~~~~~~~~~G~s~~ 195 (432) T protein:vir:10 121 YANIEFDRK-GK--VQALWPIDASKVT-VYIDDVGLLNSKTKMWYVVNTGG-QQRVLKPEEILHFKNGITLDGLVGVPTM 195 (432) T ss_pred EEEEEECCC-Cc--EEEEEEEcCceeE-EEEcCcccccccceEEEEEecCC-eEEEEccccEEEecCCCCCCCcccccHH Confidence 667777433 33 7788889888775 4444433211 111112223 3467899999988876666778999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccC Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPH 153 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~ 153 (355) ..+....-.-....++-..+...- +.|-++.+.... -+++ . .+.+++......+| +...++++. T Consensus 196 ~~~~~~i~~~~~~~~~~~~~~~ng--~~p~gil~~~~~---l~~e----~----~~~~~~~~~~~~~g~~n~~~~~vl~~ 262 (432) T protein:vir:10 196 EYLKSTLENSASADKFINNFYKQG--LQVKGLVQYVGD---LNED----A----KKVFRENFESMSSGLQNSHRIALMPV 262 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEEcCCC---CCHH----H----HHHHHHHHHHHhcccccCCcceecCC Confidence 999888877777777777777643 344333333221 1111 1 12233333333222 345689999 Q ss_pred CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVED 232 (355) Q Consensus 154 ~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~ 232 (355) |++++-++.+.....|.+..++..++|++++..+.-..+ ....|+++-.+-+. ......+.-.++.|+..||+.|++. T Consensus 263 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg-~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~ 341 (432) T protein:vir:10 263 GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLN-DLSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLD 341 (432) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh Confidence 999998876665566888889999999999888754442 22345666444333 3446677888999999999888754 Q ss_pred HHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccc Q lcl|Aclame:pro 233 LVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRA 311 (355) Q Consensus 233 l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~ 311 (355) -- . ....+.+|.++... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.++....+.. ..+-.... T Consensus 342 ~~-~---~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~g~~pi~ggD~~~~~~n-~~~~~~~~ 411 (432) T protein:vir:10 342 SE-L---DKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLK-----PNEARSKEDLPPEAGGDRLLVNGN-MLPIDMAG 411 (432) T ss_pred hh-c---CCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeEeeccc-ccchhhcc Confidence 21 1 11122233333332 37788999999999999875 478999999986444443222211 11111000 Q ss_pred c-cccccccccCCcccCccccch Q lcl|Aclame:pro 312 K-RLPGQRQGAALPSRSPRADPP 333 (355) Q Consensus 312 ~-~~~~~~~~~~~~~~~~~~~~~ 333 (355) . ..++.....+.+....+. . T Consensus 412 ~~~~k~~~~~~~~~~~~~~~--~ 432 (432) T protein:vir:10 412 QAYLKGGDTNGEVSKEGNEG--N 432 (432) T ss_pred ccccCCCCCCCCCCCCCCCC--C Confidence 0 000111101110000000 0 No 53 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=99.56 E-value=3.8e-14 Score=94.17 Aligned_cols=288 Identities=9% Similarity=-0.042 Sum_probs=169.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|++... |. +..|.+.++..+.. ...++++.+.... ..+ ...++++.+|++++.. .+..+|.|.+..+. T Consensus 129 ~~~i~r~~~-G~--~~~L~~l~~~~v~i--~~~~~~~~y~~~~-~~~--~~~~~~~eVih~r~~~-~d~~~G~spi~~~~ 199 (424) T protein:vir:45 129 YTWVKRNRR-GE--VISLDCCMPWETTL--MNTGGRYTYGLYN-EYG--AFAISPDDMIHIRALG-NNQKMGLSPIMQHA 199 (424) T ss_pred EEEEEEcCC-Cc--EEEEEEecCceEEE--EEcCCeEEEEEEe-cCc--eEEECcccEEEecCcC-CCCcccccHHHHHH Confidence 667777543 33 66788888876643 2344555544332 222 3468888888887654 45689999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC----CceeEEccCCce Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG----EAAGGYIPHGAN 156 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G----~~~~~v~p~~~~ 156 (355) ...-.-....++-..|...- +.|-++.+.....+ ++ ..+.+++.......| +...+|++.|++ T Consensus 200 ~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~l~---~e--------~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~ 266 (424) T protein:vir:45 200 ETIGMGMSGQKYTESFFSGN--ARPAGIVSVKSGLN---KE--------SWGWLKDQWQKASQALRRQENKTMLLPADLD 266 (424) T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccEEEEeCCCCC---HH--------HHHHHHHHHHHHhccccccCCceeEcCCCce Confidence 88777666777667777542 34544433322211 11 122222222222222 235689999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF-ASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh-~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) ++-++.+.....|.+..++-..+|++++..+--..+ ....++++-.+-+ .......+.-.++.|++.||+.|++.--. T Consensus 267 ~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~kLl~~~e~ 345 (424) T protein:vir:45 267 YKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMIN-DLEKATFSNISAQAIQFVRYTMMPWVTNWEQELNRRLFTRAEL 345 (424) T ss_pred EEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh Confidence 998876655556888888999999999888754332 2233555544433 33445567888899999999888654211 Q ss_pred hCCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAK 312 (355) Q Consensus 236 lNf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~ 312 (355) . ... +|+|+. . ..|.++.++.+.++++.|+.. .+++|+.+|+|+-+.+|....+.....+.....+ T Consensus 346 ~----~g~--~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T-----~NE~R~~~gl~pi~ggD~~~~~~n~~~~~~~~~~ 414 (424) T protein:vir:45 346 A----AGY--YVRFNLTGLLRGTPQERAQFYHFAITDGWMS-----RNEARAFEDMNPVEGLDEMLVSVNAANPAGDFKP 414 (424) T ss_pred c----CCc--EEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceeeecccccccccccCC Confidence 0 111 355543 2 246788999999999999865 4789999999865555544333221111111111 Q ss_pred cccccccccCCcccCccccc Q lcl|Aclame:pro 313 RLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~ 332 (355) +..... . ..+ T Consensus 415 ~~~~~~---~-------~~~ 424 (424) T protein:vir:45 415 PKNDEG---K-------TNE 424 (424) T ss_pred CCCCCC---C-------CCC Confidence 100000 0 011 No 54 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=99.55 E-value=5.1e-14 Score=93.44 Aligned_cols=311 Identities=10% Similarity=0.041 Sum_probs=167.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCc---eEEEeecCCCCCC--ceeeCCccEEEEecCCCCCccccchh Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG---LVAIEQWGVFGKA--TVRIPVDRLVVFVNEREGANWLGQSL 75 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~---l~~~~q~~~~g~~--~~~ip~~k~i~~~~~~~~~~p~G~~l 75 (355) +.+|++. +|. +..|.+.+|..+.-.....++. +....+....|.. ...+++..+|++++....+..+|.|. T Consensus 120 ~~~i~~~--~g~--~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~ 195 (457) T protein:vir:13 120 FLAVRWQ--GPN--IVGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSP 195 (457) T ss_pred EEEEEec--CCc--EEEEEEEccCceEEEEecCCCccceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccH Confidence 6667664 343 5677788777665332222221 1111222222222 23477888888877766677899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCC---ceeEEcc Q lcl|Aclame:pro 76 LRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE---AAGGYIP 152 (355) Q Consensus 76 l~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~---~~~~v~p 152 (355) +..+....-.-....++...|...- ++|-++.+.....+ + +..+.+++......+|. ...+|++ T Consensus 196 i~~~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~ls---~--------e~~~~~~~~~~~~~~g~~nag~~~vl~ 262 (457) T protein:vir:13 196 ISYARESIGLALAAQKYGSKFFANG--AMPGAVVEVPGTMS---E--------EGLARAREAWRAANSGVDNAHRVALLT 262 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEcCCCCC---H--------HHHHHHHHHHHHHhcCccccCcceecC Confidence 9999988877777777777777643 45544433322111 1 12333444444444442 3468999 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY--A-LGDTFASFFTGSLNAVMKHIADVTQQHV 229 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~--A-l~~vh~~v~~~~~~ad~~~i~~~ln~~l 229 (355) .|++++-++.+.....|.+..++...+|++++..+-..++ ...++++ + ..+.........+.-.++.|+..||+.| T Consensus 263 ~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L 341 (457) T protein:vir:13 263 EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLIS-DATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL 341 (457) T ss_pred CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcC-CCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 9999998876655556778888999999999888643332 2222332 1 2333334445667788888888888877 Q ss_pred HHHHHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc--cccccccc---- Q lcl|Aclame:pro 230 VEDLVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER--DDGADAAA---- 302 (355) Q Consensus 230 i~~l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~--~~~~~~~~---- 302 (355) ++..- ....+-+|.++... .|.++.++.+.++++.|++. .+++|+.+|+|+-.++ +....+.. T Consensus 342 ~~~~~-----~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T-----~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~ 411 (457) T protein:vir:13 342 FAETA-----DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYS-----IDEVRAAEDMTPLPDGLGEKYRVPLNLGEV 411 (457) T ss_pred cCccc-----cCceeEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCcccceeeccccccc Confidence 65421 11112234333332 37789999999999999866 3789999999754443 22211100 Q ss_pred ----cccCCcccc-----ccccccccccCCcccCccccchhHHHHHhHhhhchH Q lcl|Aclame:pro 303 ----AKAAGRRRA-----KRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPA 347 (355) Q Consensus 303 ----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355) ...+...+. ...+.......+......+....-++. + T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~--------~ 457 (457) T protein:vir:13 412 GEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATEEDDEDD--------A 457 (457) T ss_pred cccccccccCCCCCCCCCccccCCCCCCCCCCccccCCCCccccc--------C Confidence 000000000 000000000000000000000000000 0 No 55 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=99.55 E-value=5.8e-14 Score=93.17 Aligned_cols=311 Identities=11% Similarity=0.039 Sum_probs=168.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCC---ceEEEeecCCCCCCc--eeeCCccEEEEecCCCCCccccchh Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDG---GLVAIEQWGVFGKAT--VRIPVDRLVVFVNEREGANWLGQSL 75 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g---~l~~~~q~~~~g~~~--~~ip~~k~i~~~~~~~~~~p~G~~l 75 (355) +.+|.+. +|. +..|.+.+|.++.......++ .+....+....|... ..+++..+|++++....+..+|.|. T Consensus 120 ~~~i~~~--~g~--~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp 195 (457) T protein:vir:62 120 FLAVRWA--GPN--IAGLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSP 195 (457) T ss_pred EEEEEeC--CCc--EEEEEEEcCcceEEEEeccCCccceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccH Confidence 6666554 343 556778877766532222221 122111111222222 3467888888887777777899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCC---ceeEEcc Q lcl|Aclame:pro 76 LRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE---AAGGYIP 152 (355) Q Consensus 76 l~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~---~~~~v~p 152 (355) +..+....-.-....++...|...- +.|-++.++....+ ++ .++.+++...+..+|. ...++++ T Consensus 196 ~~~~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~ls---~e--------~~~~~~~~~~~~~~G~~nag~~~vl~ 262 (457) T protein:vir:62 196 ISYARESIGLALAAQKYGAHFFRNG--AMPGAVVEVPGTMS---EE--------GLARAREAWRAANSGVDNAHRVALLT 262 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CCcceEEEcCCCCC---HH--------HHHHHHHHHHHHhcCccccCcceecC Confidence 9999988888777777777787643 45544433332211 11 1233444444443342 3368999 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL---GDTFASFFTGSLNAVMKHIADVTQQHV 229 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al---~~vh~~v~~~~~~ad~~~i~~~ln~~l 229 (355) .|++++-++.+.....|.+..++...+|++++..+-..++ ....+++.. .+.........+.-.++.|+..||+.| T Consensus 263 ~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L 341 (457) T protein:vir:62 263 EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLIS-DATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL 341 (457) T ss_pred CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcC-CCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 9999998877666666888888999999999887643332 222233322 223334445567778888888888877 Q ss_pred HHHHHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc--ccccccccc--- Q lcl|Aclame:pro 230 VEDLVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER--DDGADAAAA--- 303 (355) Q Consensus 230 i~~l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~--~~~~~~~~~--- 303 (355) ++..- ....+-+|.++... .|.++.++.+.++++.|++. .+++|+.+|+|+-+++ +....+..- T Consensus 342 ~~~~~-----~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~ 411 (457) T protein:vir:62 342 FAETA-----DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYS-----IDEVRAAEDMTPLPDGLGEKYRVPLNLGEI 411 (457) T ss_pred cCccc-----cCceEEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCcceeeeccccccc Confidence 65421 11112234333332 37789999999999999865 4799999999865444 322211100 Q ss_pred -ccCCcccccccccccc---------ccCCcccCccccchhHHHHHhHhhhchH Q lcl|Aclame:pro 304 -KAAGRRRAKRLPGQRQ---------GAALPSRSPRADPPRRRGPLRRRPRHPA 347 (355) Q Consensus 304 -~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355) ..+...+.+.+..... ..+.....|..++.+-... + T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~ 457 (457) T protein:vir:62 412 GEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDDD--------A 457 (457) T ss_pred cccccccccCCCccCCCCccCCCCCCCCCCCCCCCcccccccccc--------C Confidence 0000000000000000 0000000010000000000 0 No 56 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=99.54 E-value=7.9e-14 Score=92.42 Aligned_cols=297 Identities=10% Similarity=0.033 Sum_probs=167.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+|+....+|. |..|.+.||.+++ +..+++|++.+..... .|.....+|...+||+++... +..+|.|.+..+. T Consensus 107 y~~i~r~~~g~~--~~~l~~l~p~~v~-v~~~~~~~~~y~~~~~-~~~~~~~~~~~dviH~r~~~~-d~~~G~s~l~~~~ 181 (417) T protein:vir:38 107 YSRIVRDPITNE--PAMFEFYAPSQTQ-VDTSDPDNIIYRFTPY-NSSMQKVCGFEDVIHWKFFSY-DTIMGRSPLLSLG 181 (417) T ss_pred EEEEEEcCCCCE--EEEEEEeCCceEE-EEEcCCCeEEEEEEEc-CCcEEEEecCcceEEecCCCC-CCccccCHHHHHH Confidence 666766444433 6678888888775 4556677776543322 233345578888888887643 4478999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC--CceeEEccCCceEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG--EAAGGYIPHGANFT 158 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G--~~~~~v~p~~~~ie 158 (355) ...-.-....++...|... | +.|-++........ ++ ..+.+++......+| +...+|++.|++++ T Consensus 182 ~~i~~~~~~~~~~~~~f~n-g-~~p~~il~~~~~l~---~e--------~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~ 248 (417) T protein:vir:38 182 DEIGLQESGVSTLQKFFKS-G-LKGSIIKAKESRLS---AE--------ARQKIREDFERAQAGADAGSPIIVDATMDYQ 248 (417) T ss_pred HHHHHHHHHHHHHHHHHhc-c-CCCcEEEEeCCCCC---HH--------HHHHHHHHHHHHhcccccCCceeccCCceEE Confidence 8877777777777777753 2 44544333322111 11 122333333443433 23467889999998 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN 237 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN 237 (355) -++.+.....|.+..++..++|++++..+.-..+ .. ++++- .+.........+.-.++.|++.||+.|+++.-.. T Consensus 249 ~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg-~~--~~~s~~e~~~~~~~~~tl~P~~~~ie~~l~~~Ll~~~~~~- 324 (417) T protein:vir:38 249 PLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLA-QN--SPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDAQRH- 324 (417) T ss_pred EccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhC-CC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhcc- Confidence 8877665566888888899999998777644343 22 23332 2233344456788888889999998886653211 Q ss_pred CCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcc-c-cccccc---------cccC Q lcl|Aclame:pro 238 WGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERD-D-GADAAA---------AKAA 306 (355) Q Consensus 238 f~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~-~-~~~~~~---------~~~~ 306 (355) . -.|.|+... ........++++++.|+.. .+++|+.+|+|+-..++ + ...+.. ...+ T Consensus 325 -----~-~~~~fd~~~-l~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~ 392 (417) T protein:vir:38 325 -----Q-YCIGFDTKS-VNGLPIADVNTAVNGGLWT-----GNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAE 392 (417) T ss_pred -----c-ceEEechhh-hhHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCCeeeecccccccccccccccc Confidence 1 256665432 2233345577889999865 47899999998543332 1 111100 0001 Q ss_pred CccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 307 GRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .....+.++....... ......... T Consensus 393 ~~~~~kgg~~~~~~~~---~~~~~~~~~ 417 (417) T protein:vir:38 393 HAAELKGGDTNAKGNQ---NGSGTNANS 417 (417) T ss_pred cccccCCCCCCCCCCC---cCCCCcCCC Confidence 1111111222111110 000000000 No 57 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=99.53 E-value=1.4e-13 Score=91.03 Aligned_cols=326 Identities=13% Similarity=0.085 Sum_probs=171.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE----EEeecCCCCCCceeeCCccEEEEecCCCCC---ccccc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV----AIEQWGVFGKATVRIPVDRLVVFVNEREGA---NWLGQ 73 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~----~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~---~p~G~ 73 (355) .+|+++.+++ .-.+..|.+.+|.+++ +..+.+|.+. ...+. ..|.....++....|+|+.....+ .+||. T Consensus 182 ~~~~~~~rd~-~G~~~~L~pl~p~~V~-v~~~~~g~~~~~~~~y~~~-~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~ 258 (563) T protein:vir:95 182 NFEKVFNKNN-KTKLEKFIAVDPSTIF-YATDKKGKIIKGGKRFVQV-VDKRVVASFTSRELAMGIRNPRTELSSSGYGL 258 (563) T ss_pred EEEEEEEecC-CCceEEEEEeCCceeE-EEECCCCceeccceeEEEE-eCCceeEEecCcceEEEeccCCCCcccCcccc Confidence 7788887643 3347789999998885 4556666543 12222 234444567888888888765543 67899 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCC-ce---eE Q lcl|Aclame:pro 74 SLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE-AA---GG 149 (355) Q Consensus 74 ~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~-~~---~~ 149 (355) |.+..+......-....++-..|...- +.|-++........ -+. + ..+.+++......+|. .+ .+ T Consensus 259 Spi~~a~~~i~~~~~~~~~~~~~f~ng--~~p~giL~~~~~~~-ls~----e----~~~~~~~~~~~~~~G~~nagk~~~ 327 (563) T protein:vir:95 259 SEVEIAMKEFIAYNNTESFNDRFFSHG--GTTRGILQIRSDQQ-QSQ----H----ALENFKREWKSSLSGINGSWQIPV 327 (563) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCceEEEeCCCCC-CCH----H----HHHHHHHHHHHHhccccccccceE Confidence 999999999988888888888888754 34433322211110 111 1 1233444444433342 22 47 Q ss_pred EccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc--------CCccc--hhhhHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 150 YIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG--------DKSTG--SYALGD-TFASFFTGSLNAVM 218 (355) Q Consensus 150 v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~--------~~~~G--S~Al~~-vh~~v~~~~~~ad~ 218 (355) |++.|++++-++.+.....|.+..++..++|++++..+--.++- ...++ +++-.+ .........+.-.+ T Consensus 328 vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l 407 (563) T protein:vir:95 328 VMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLL 407 (563) T ss_pred EcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHH Confidence 88999999888777666778899999999999998776422210 11112 223222 23335556778888 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCccHHHHHHHH--HHHHhCCCcccchhhHHHHHHHhCCCCCCCccc Q lcl|Aclame:pro 219 KHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKEQPVTAEAI--RALVECGAFTADPELEKDLRARYGLPAPAERDD 296 (355) Q Consensus 219 ~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~--~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~ 296 (355) ..|+..||+.|++.. + . . -+|.|.. .|.+..++.. .++++.|++. .+++|+.+|+|+-+.+|. T Consensus 408 ~~ie~~ln~~L~~~~-----~-~-~-~~~~f~r--~D~~~~~e~~~~~~~~~~G~lT-----~NE~R~~~gl~Pi~gGD~ 472 (563) T protein:vir:95 408 RFIEDLVNRHIISEY-----G-D-K-YTFQFVG--GDTKSATDKLNILKLETQIFKT-----VNEAREEQGKKPIEGGDI 472 (563) T ss_pred HHHHHHHHhhhchhc-----c-c-c-cEEEecc--CCHHHHHHHHHHHHHhcCCccC-----HHHHHHHhCCCCCCCcce Confidence 899999999887642 1 1 1 2455543 3444444443 3467778754 479999999986655554 Q ss_pred ccccccccc-CCccc---------cc---------cccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 297 GADAAAAKA-AGRRR---------AK---------RLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 297 ~~~~~~~~~-~~~~~---------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) ...+..-.. ....+ .. .++...+....+..+..+.....+...........-.+.--+| T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563) T protein:vir:95 473 ILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQIKGDDNVYRTQTSNKG 550 (563) T ss_pred eecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCccccccccccccccccccccCcccc Confidence 332211000 00000 00 0000000000000000000000000000001111111111222 No 58 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=99.53 E-value=1.4e-13 Score=91.03 Aligned_cols=326 Identities=13% Similarity=0.085 Sum_probs=171.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE----EEeecCCCCCCceeeCCccEEEEecCCCCC---ccccc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV----AIEQWGVFGKATVRIPVDRLVVFVNEREGA---NWLGQ 73 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~----~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~---~p~G~ 73 (355) .+|+++.+++ .-.+..|.+.+|.+++ +..+.+|.+. ...+. ..|.....++....|+|+.....+ .+||. T Consensus 182 ~~~~~~~rd~-~G~~~~L~pl~p~~V~-v~~~~~g~~~~~~~~y~~~-~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~ 258 (563) T protein:vir:99 182 NFEKVFNKNN-KTKLEKFIAVDPSTIF-YATDKKGKIIKGGKRFVQV-VDKRVVASFTSRELAMGIRNPRTELSSSGYGL 258 (563) T ss_pred EEEEEEEecC-CCceEEEEEeCCceeE-EEECCCCceeccceeEEEE-eCCceeEEecCcceEEEeccCCCCcccCcccc Confidence 7788887643 3347789999998885 4556666543 12222 234444567888888888765543 67899 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCC-ce---eE Q lcl|Aclame:pro 74 SLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE-AA---GG 149 (355) Q Consensus 74 ~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~-~~---~~ 149 (355) |.+..+......-....++-..|...- +.|-++........ -+. + ..+.+++......+|. .+ .+ T Consensus 259 Spi~~a~~~i~~~~~~~~~~~~~f~ng--~~p~giL~~~~~~~-ls~----e----~~~~~~~~~~~~~~G~~nagk~~~ 327 (563) T protein:vir:99 259 SEVEIAMKEFIAYNNTESFNDRFFSHG--GTTRGILQIRSDQQ-QSQ----H----ALENFKREWKSSLSGINGSWQIPV 327 (563) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCceEEEeCCCCC-CCH----H----HHHHHHHHHHHHhccccccccceE Confidence 999999999988888888888888754 34433322211110 111 1 1233444444433342 22 47 Q ss_pred EccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc--------CCccc--hhhhHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 150 YIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG--------DKSTG--SYALGD-TFASFFTGSLNAVM 218 (355) Q Consensus 150 v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~--------~~~~G--S~Al~~-vh~~v~~~~~~ad~ 218 (355) |++.|++++-++.+.....|.+..++..++|++++..+--.++- ...++ +++-.+ .........+.-.+ T Consensus 328 vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l 407 (563) T protein:vir:99 328 VMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLL 407 (563) T ss_pred EcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHH Confidence 88999999888777666778899999999999998776422210 11112 223222 23335556778888 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCccHHHHHHHH--HHHHhCCCcccchhhHHHHHHHhCCCCCCCccc Q lcl|Aclame:pro 219 KHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKEQPVTAEAI--RALVECGAFTADPELEKDLRARYGLPAPAERDD 296 (355) Q Consensus 219 ~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~--~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~ 296 (355) ..|+..||+.|++.. + . . -+|.|.. .|.+..++.. .++++.|++. .+++|+.+|+|+-+.+|. T Consensus 408 ~~ie~~ln~~L~~~~-----~-~-~-~~~~f~r--~D~~~~~e~~~~~~~~~~G~lT-----~NE~R~~~gl~Pi~gGD~ 472 (563) T protein:vir:99 408 RFIEDLVNRHIISEY-----G-D-K-YTFQFVG--GDTKSATDKLNILKLETQIFKT-----VNEAREEQGKKPIEGGDI 472 (563) T ss_pred HHHHHHHHhhhchhc-----c-c-c-cEEEecc--CCHHHHHHHHHHHHHhcCCccC-----HHHHHHHhCCCCCCCcce Confidence 899999999887642 1 1 1 2455543 3444444443 3467778754 479999999986655554 Q ss_pred ccccccccc-CCccc---------cc---------cccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 297 GADAAAAKA-AGRRR---------AK---------RLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 297 ~~~~~~~~~-~~~~~---------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) ...+..-.. ....+ .. .++...+....+..+..+.....+...........-.+.--+| T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (563) T protein:vir:99 473 ILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQIKGDDNVYRTQTSNKG 550 (563) T ss_pred eecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCccccccccccccccccccccCcccc Confidence 332211000 00000 00 0000000000000000000000000000001111111111222 No 59 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=99.52 E-value=1.1e-13 Score=91.62 Aligned_cols=300 Identities=15% Similarity=0.045 Sum_probs=163.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeee-cCCCceEEEee-cCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDV-APDGGLVAIEQ-WGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~-~~~g~l~~~~q-~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +..| .+..++...+..|.+.++..++.-.. +..+++.+... ....+.....+|...+||++.....+..+|.|.+.. T Consensus 115 ~~~i-~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~ 193 (423) T protein:vir:81 115 FWLL-PGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYIIIESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQS 193 (423) T ss_pred EEEE-EecCCcCcceEEEeecccceeeeeeccCCCcceEEEEEEecCCCceEEEEcccceEEecCCCCCCccccccHHHH Confidence 3333 22222222333465666554432222 22355554321 111222346788888887775555566789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCce--EEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCce Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVP--IYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGAN 156 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p--~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ 156 (355) +....-.-....++...|... | +.| +++.+........+. ++....++.+++....-..+....++++.|++ T Consensus 194 ~~~~i~~~~~~~~~~~~~f~n-g-~~p~gvi~~~~~~~~~~l~~----e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~ 267 (423) T protein:vir:81 194 LRDILGEQIEAAIFRAQMWRN-G-PRPGMVIMRDPESKAGKWDA----ESRTRFMANLRASFSPKSSDVGGTLLLEDGMK 267 (423) T ss_pred HHHHHHHHHHHHHHHHHHHhc-c-CCCceEEEecCcccCccCCH----HHHHHHHHHHHHHhccccccCCcceecCCCce Confidence 998887777777777777754 3 334 333222111111111 11222222222222111112234678999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) ++-++.+.....|.+..++...+|++++..+.-.. +..+.++|+-.+-+. ......+.-.++.|++.||+.|++..-. T Consensus 268 ~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~l-g~~~~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~ 346 (423) T protein:vir:81 268 AENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMV-GQLDNANYSNVREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGI 346 (423) T ss_pred EEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHh-cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccc Confidence 98887665555677888899999999988864333 222345666544444 3444467888899999999988775311 Q ss_pred hCCCCcccccEEEec--CCC-ccHHHHHHHHHHHH-hCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALV-ECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRA 311 (355) Q Consensus 236 lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~-~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~ 311 (355) ..... .|+|+ ... .|.++.++.+++++ +.|+.. .+++|+.+|+|+-+.+|....+..- .+... T Consensus 347 ---~~~~~--~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T-----~NE~R~~~gl~p~~gGD~~~~p~n~-~~~~~-- 413 (423) T protein:vir:81 347 ---DNEKF--YFEFNLEEKLRASFEEAAEIKRAAVGNVAWMT-----INEVRAMDNLPSIDGGDDLARPLNT-EFGDS-- 413 (423) T ss_pred ---ccCcc--EEEecchhhhccCHHHHHHHHHHHHhCCCCcC-----HHHHHHHhCCCCCCCcceeeccccc-ccCcc-- Confidence 01112 34454 322 47788899988865 678755 4789999999876555544432211 11111 Q ss_pred cccccccccc Q lcl|Aclame:pro 312 KRLPGQRQGA 321 (355) Q Consensus 312 ~~~~~~~~~~ 321 (355) ...++..+.. T Consensus 414 ~~~~~~~~~t 423 (423) T protein:vir:81 414 EDAPGEEVET 423 (423) T ss_pred CCCCCCCCCC Confidence 1111111100 No 60 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=99.51 E-value=2.1e-13 Score=90.05 Aligned_cols=325 Identities=13% Similarity=0.083 Sum_probs=172.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEE----EeecCCCCCCceeeCCccEEEEecCCCCC---ccccc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVA----IEQWGVFGKATVRIPVDRLVVFVNEREGA---NWLGQ 73 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~----~~q~~~~g~~~~~ip~~k~i~~~~~~~~~---~p~G~ 73 (355) .+|++|.+++ .-.+..|.+.+|.+++ +..+.+|.+.. ..+. ..+.....++...+|+|++....+ ..||. T Consensus 181 ~~~i~~~rd~-~g~~~~L~pl~p~~V~-v~~~~dg~~~~~~~~~~~~-~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~ 257 (576) T protein:vir:96 181 NFEKVFNKKN-ATTMDKFIAVDPSTIF-YATDKNGKIIKGGKRFVQV-INKKVVASFTSREMAMGIRNPRTELSSSGYGL 257 (576) T ss_pred EEEEEEecCC-CCceEEEEEeCCceeE-EEECCCCceeeeeeEEEEe-cCCceEEEecccceEEEeecCCCCcccCcccc Confidence 7788887643 2336788899999885 55666766432 2232 233445578888889888766544 67899 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC--Cce--eE Q lcl|Aclame:pro 74 SLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG--EAA--GG 149 (355) Q Consensus 74 ~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G--~~~--~~ 149 (355) |.+..+......-....++-..|...- +.|-++..+..... .+.+ ..+.+++...+..+| ++. .+ T Consensus 258 Spi~~a~~~i~~~~~~~~~~~~~f~Ng--~~p~giL~~~~~~~-ls~e--------~~~~lr~~~~~~~~G~~nag~~p~ 326 (576) T protein:vir:96 258 SEVEIAMKQFIAYNNTETFNDRFFSHG--GTTRGILQIKSEQQ-QSQR--------ALENFKREWKSSFSGINGSWQVPV 326 (576) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCC-CCHH--------HHHHHHHHHHHHhcccccccccee Confidence 999999998888888888888888743 34433322211110 1111 123344444443333 222 37 Q ss_pred EccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccC--------Cccc--hhhhH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 YIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGD--------KSTG--SYALG-DTFASFFTGSLNAVM 218 (355) Q Consensus 150 v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~--------~~~G--S~Al~-~vh~~v~~~~~~ad~ 218 (355) |++.|++++-++.+.....|.+..++..++|++++..+-..++-. .++| +|+-. +.........+.-.+ T Consensus 327 vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~ 406 (576) T protein:vir:96 327 VMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLL 406 (576) T ss_pred ecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHH Confidence 889999998887777777899999999999999987764322110 0112 33433 333445556788888 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCccHHHHHHHHHH--HHhCCCcccchhhHHHHHHHhCCCCCCCccc Q lcl|Aclame:pro 219 KHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKEQPVTAEAIRA--LVECGAFTADPELEKDLRARYGLPAPAERDD 296 (355) Q Consensus 219 ~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~~~--l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~ 296 (355) +.|+..||+.|++.. +. . -.|.|.. .+.+..++.... +...|++. .+++|+.+|+|+-+.+|. T Consensus 407 ~~ie~~ln~~Ll~~~-----~~--~-~~~~f~r--~d~~~~~e~~~~~~~~~~G~lT-----~NE~R~~~gl~piegGD~ 471 (576) T protein:vir:96 407 RFIEDLINTHIISEY-----SD--K-YVFQFVG--GDTKSELDKIKILQEEVKTYKT-----VNEARKEKGLKPIEGGDV 471 (576) T ss_pred HHHHHHHHhhhchhc-----cC--c-eEEEecc--CCHHHHHHHHHHHHHHhcCccC-----HHHHHHHhCCCCCCCcce Confidence 999999999887642 11 1 2455543 344555555543 34567654 478999999986544443 Q ss_pred cccccccccCC-cccccccccccc----------ccCCcccCccc--cchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 297 GADAAAAKAAG-RRRAKRLPGQRQ----------GAALPSRSPRA--DPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 297 ~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) ...+..-.... .......+.... ....+...+.. .+....+..... ....+....-|| T Consensus 472 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~-~~~~~~~~~~~~ 542 (576) T protein:vir:96 472 LLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESND-PTKIDSPVGTDG 542 (576) T ss_pred eccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCccccccccc-CCCCCCcccccc Confidence 32211100000 000000000000 00000000000 000000110000 000011111222 No 61 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=99.49 E-value=4e-13 Score=88.56 Aligned_cols=297 Identities=10% Similarity=0.063 Sum_probs=167.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..+++....+|. +..|.+.+|..++ +..+++|++.+.......| ....+|...+||+++... +..+|.|.+..+. T Consensus 104 y~~i~r~~~~g~--~~~L~~i~p~~v~-v~~~~~~~~~y~~~~~~~~-~~~~~~~~evih~r~~~~-dg~~G~spi~~~~ 178 (406) T protein:vir:97 104 FSRILRDPKTNQ--ALQFQFYRPSETT-VEETDNHEIVYTFTDMLTA-KQVKCFAHDVIHWKFFSH-DTILGRSPLLSLG 178 (406) T ss_pred EEEEEecCCCCe--EEEEEEECCCeeE-EEEcCCceEEEEEEecCCc-eEEEEccccEEEecCCCC-CCcccccHHHHHH Confidence 566665433443 6788999988775 5566777777644333333 446788999998887643 3477999999888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCceEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGANFT 158 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~ie 158 (355) ...-.-....++...|.. .|. .|-++...+... +.+ ..+.+++.......|.. ..+|++.|++++ T Consensus 179 ~~i~~~~a~~~~~~~~f~-ng~-~~~~i~~~~~~l---~~e--------~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~ 245 (406) T protein:vir:97 179 DEIDLQTGGINTLIKFFK-DGF-SSGILTMKGAQL---SGD--------ARQRARQEFEKMREGSVGGSPLVFDSTMEYT 245 (406) T ss_pred HHHHHHHHHHHHHHHHHh-ccC-CCceEEecCCCC---CHH--------HHHHHHHHHHHHhcccccCceeecCCCceEE Confidence 777666677777777775 343 343332222111 111 12223333344444433 357889999999 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) -++.+.....|.+..++..++|++++..+.-.++.. ..+| +..+.........+.-.++.|++.||+.|++.--. T Consensus 246 ~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~-~~~~-~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~--- 320 (406) T protein:vir:97 246 PLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVN-SPNQ-SVAQLMEDYVTNDLPFYFDAITSELGLKTLNDKDR--- 320 (406) T ss_pred EccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCC-CCcc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhhc--- Confidence 887665555577777888999999887765444322 1222 22333344455667788888889998877543210 Q ss_pred CCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC--ccccccccccc-c-CCccccccc Q lcl|Aclame:pro 239 GPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE--RDDGADAAAAK-A-AGRRRAKRL 314 (355) Q Consensus 239 ~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~--~~~~~~~~~~~-~-~~~~~~~~~ 314 (355) . .-+++|+. ..+....++.+.++++.|+.. .+++|+.+|+|+-.+ ++....+..-. . ......... T Consensus 321 ---~-~~~i~fd~-~~~~~~~~~~~~~~~~~g~~T-----~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~~~~~~~~~~ 390 (406) T protein:vir:97 321 ---R-LYHIEFDT-RSVTGRNVDEIVKLVNNQILT-----PNQGLVELGKQKSTDPNMDRYQSSLNYVFLDKKEEYQDKV 390 (406) T ss_pred ---c-ceeEEEec-CccchhhHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCCeEeeccCccchhccccccccc Confidence 1 12455543 235667788888999999765 478999999986433 23322221100 0 000000000 Q ss_pred cccccccCCcccCccc Q lcl|Aclame:pro 315 PGQRQGAALPSRSPRA 330 (355) Q Consensus 315 ~~~~~~~~~~~~~~~~ 330 (355) .....+++......+. T Consensus 391 ~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 391 GIKGKGGEVNAEEDKS 406 (406) T ss_pred ccccCCCCCCCCCCCC Confidence 0011111111111111 No 62 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=99.49 E-value=3.4e-13 Score=88.92 Aligned_cols=325 Identities=11% Similarity=0.025 Sum_probs=166.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCc-----eEEEeecCCCCCCceeeCCccEEEEecCCCCC---cccc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG-----LVAIEQWGVFGKATVRIPVDRLVVFVNEREGA---NWLG 72 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~-----l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~---~p~G 72 (355) ..|+++... | .|..|.+.+|.++. +..+.++. .++ .+.. .|.....++...+|++++....+ ..|| T Consensus 182 yi~i~r~~~-G--~~~~L~pl~p~~V~-v~~d~~~~~~~~~~~y-~~~~-~g~~~~~~~~~eiih~~~~~~~~~~~~~~G 255 (574) T protein:vir:80 182 NFEKVFDKD-G--NFIKFDTVDPTTIF-LATNGEGKLIKNGERF-VQVI-DNRIVAKFNERELAFAVRNPRADIEVGQYG 255 (574) T ss_pred EEEEEECCC-C--cEEEEEEEcCceeE-EEEcCccccccCceEE-EEEe-CCceEEEEccccEEEEeccCCCCccccccc Confidence 778888643 4 37789999998885 34444432 222 2222 34445678888899888765543 5689 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC-Cce---e Q lcl|Aclame:pro 73 QSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG-EAA---G 148 (355) Q Consensus 73 ~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G-~~~---~ 148 (355) .|.+..+......-....++-..|...- +.|-++..+.... ..+. +..+.+++...+..+| .++ . T Consensus 256 ~spi~~a~~~i~~~~~a~~~~~~~f~ng--~~p~gil~~~~~~-~ls~--------e~~~~lk~~~~~~~~G~~n~g~~~ 324 (574) T protein:vir:80 256 YPELEIALKQFIAHENTEVFNDRFFSHG--GTTRGILHVKTGQ-QQSQ--------QALDIFRREWRSSLAGINGSWQIP 324 (574) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCC-CCCH--------HHHHHHHHHHHHHhccccccccce Confidence 9999999988888777888878888753 3443332221110 0111 1233444444443333 122 3 Q ss_pred EEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc---------CCccchhhhHHHHHH-HHHHHHHHHH Q lcl|Aclame:pro 149 GYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG---------DKSTGSYALGDTFAS-FFTGSLNAVM 218 (355) Q Consensus 149 ~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~---------~~~~GS~Al~~vh~~-v~~~~~~ad~ 218 (355) ++++.|++++-++.+.....|.+..++..++|+.++..+--.++- .++..++|..+.+.. .....+.-.+ T Consensus 325 vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~ 404 (574) T protein:vir:80 325 VVSAEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLL 404 (574) T ss_pred eecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHH Confidence 555788888877766555668888899999999998775322110 011123455554444 4445788999 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccc Q lcl|Aclame:pro 219 KHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGA 298 (355) Q Consensus 219 ~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~ 298 (355) +.|+..||+.|++.+ + .. + +|.|....-........+.+++..|+.. .+++|+.+|+|+-+.++... T Consensus 405 ~~ie~~ln~~Ll~~~-----~-~~-~-~~~f~~~d~~~~~~~~~~~~~~~~G~lT-----~NE~R~~lgl~Pi~gGD~~~ 471 (574) T protein:vir:80 405 RFIEDTVNTYIVAEF-----G-EK-Y-QFQFRGGDLSAQLDKLKIIEQEGKVFRT-----VNEIRHDKGLEPIKGGDVIL 471 (574) T ss_pred HHHHHHHHhhhhhhc-----C-Cc-e-EEEecccchhhHHHHHHHHHHHhCCccC-----HHHHHHHhCCCCCCCCCEee Confidence 999999999887642 1 11 1 5666543222222222234466778655 47999999998665554432 Q ss_pred cccc-cccC----------CccccccccccccccCCcccC--ccccchhH--HHHHhHhhhchHHh----------hhcC Q lcl|Aclame:pro 299 DAAA-AKAA----------GRRRAKRLPGQRQGAALPSRS--PRADPPRR--RGPLRRRPRHPAHR----------RCAP 353 (355) Q Consensus 299 ~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~----------~~~~ 353 (355) .+.. .... +...+.........+..+... +.+.+... .....+........ ...= T Consensus 472 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (574) T protein:vir:80 472 NGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDVSFQDEQQGLNGKSKKVNGKVDDNVGK 551 (574) T ss_pred eccceeecccccccccCCccchhccccccccccCCCCCCCCCCCCCCccccccchhhhhhhhhccchhhhcCCccccccc Confidence 2110 0000 000001100000001001111 01000000 00000000000111 1111 Q ss_pred CC Q lcl|Aclame:pro 354 DG 355 (355) Q Consensus 354 ~~ 355 (355) || T Consensus 552 ~~ 553 (574) T protein:vir:80 552 DG 553 (574) T ss_pred cc Confidence 22 No 63 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=99.48 E-value=2.1e-13 Score=90.13 Aligned_cols=278 Identities=9% Similarity=0.006 Sum_probs=161.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCC--CCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGV--FGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~--~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) ..++++... |+ +..|.+.|+.++. +..+.+|+.+.++.... .+.....++.+.+|++++....+..||.|.+.. T Consensus 110 ~~~i~r~~~-G~--~~~L~~i~~~~v~-v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~ 185 (392) T protein:vir:74 110 FAYRWRNAN-GA--DMKWEYLRPSQVN-TYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYS 185 (392) T ss_pred EEEEEECCC-Cc--EEEEEEEcCceeE-EEEcCCCceEEEEEEecCCccceeEEEcCccEEEecCCCCCCccccccHHHH Confidence 677777543 43 7789999998775 55566665444332221 222345688888888887766777899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) +....-.-....++...+...-+.+--+++.+.. ....+ +... .+.+..... .++...+|++.|++++ T Consensus 186 ~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~--~~~~~-----~~~~----~~~~~~~~~-~n~g~~~vl~~g~~~~ 253 (392) T protein:vir:74 186 LRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG--GLLSD-----KDKA----SRSRSFMKR-SRSGGPVVLDDLEEFT 253 (392) T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCC--CCchH-----HHHH----HHHHHHhcc-ccCCCeeecCCCceEE Confidence 9999888888888888888764433333333322 11111 1111 111111111 1223458899999999 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) -++.+.....|.+..++..++|++++..+.-..+.. + .+++..+--.......+.-.++.|++.+|+.|++.+ ++|+ T Consensus 254 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-~-~~~~~~e~~~~~~~~~l~p~~~~ie~~l~~~l~~~~-~~~~ 330 (392) T protein:vir:74 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ-G-DQQSSIQQISGMYASALNRYLRPAISELEYKLSDHI-SVNM 330 (392) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC-C-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-cccc Confidence 998776667788999999999999988775434221 1 222323323344556667788888888888775542 2221 Q ss_pred CCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHh---CCCCCCCccccccccccccCCcccccccc Q lcl|Aclame:pro 239 GPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARY---GLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) Q Consensus 239 ~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~---glp~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) . . ....+...+++.+..|+..|+... +.+|+.+ |+. |.+ ....... ++ T Consensus 331 ~-------~---~~~~d~~~~~~~~~~l~~~g~~t~-----near~~~~~~g~~-pne--~r~~enl---------~~-- 381 (392) T protein:vir:74 331 R-------P---AIDPLGDNYLSTISTATRWGALAE-----NQATFVLQEAGYI-PKD--LPAPENT---------NK-- 381 (392) T ss_pred h-------h---hhcCCHHHHHHHHHHHHhCCCcCH-----HHHHHHHHhCCCC-ccc--cchhcCC---------CC-- Confidence 0 0 112356778888999999997653 4555544 654 211 1000000 00 Q ss_pred ccccccCCcccCc Q lcl|Aclame:pro 316 GQRQGAALPSRSP 328 (355) Q Consensus 316 ~~~~~~~~~~~~~ 328 (355) ..+++.+...| T Consensus 382 --~~~Gd~~~p~p 392 (392) T protein:vir:74 382 --KTTGQSNEPVP 392 (392) T ss_pred --CCCCCCCCCCC Confidence 11111111111 No 64 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=99.47 E-value=2.7e-13 Score=89.48 Aligned_cols=278 Identities=9% Similarity=0.004 Sum_probs=162.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeec--CCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQW--GVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~--~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++... |+ +..|.+.|+.+++ +..+.+|+.+.++.. ...+.....+|.+.+|++++....+..||.|.+.. T Consensus 110 ~~~i~r~~~-g~--~~~L~~l~~~~v~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~ 185 (392) T protein:vir:39 110 FAYRWRNAN-GA--DMKWEYLRPSQVN-TYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYS 185 (392) T ss_pred EEEEEECCC-Cc--EEEEEEEcCceeE-EEEcCCCceEEEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHH Confidence 566766432 33 7789999998775 456666654444322 22222345688888888887777778899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) +....-.-....++...+...- +.|-++.++....... ++... ...+...+. .++...++++.|++++ T Consensus 186 ~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~~~~~-----~~~~~----~~~~~~~~~-~~~g~~~vl~~g~~~~ 253 (392) T protein:vir:39 186 LRRESKIQRASDRLTISSLNSS--LNVPGVLTVKGGGLLS-----DKDKA----SRSRSFMKR-SRSGGPVVLDDLEEFT 253 (392) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCCch-----HHHHH----HHHHHHhcc-ccCCCeeecCCCceEE Confidence 9999888888888888888754 3444333332211111 11111 111111111 1223468899999999 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) -++.+.....|.+..++..++|++++..+.-..+.. + .+.+..+-........+.-.++.|++.+|+.|++.+ .+|. T Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~-~-~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~~-~~d~ 330 (392) T protein:vir:39 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ-G-DQQSSIQQISGMYASALNRYLRPAISELEYKLSDHI-SVNM 330 (392) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC-C-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccc Confidence 888776667788899999999999988865444321 1 122223333445566777888888888888775542 2221 Q ss_pred CCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHh---CCCCCCCccccccccccccCCcccccccc Q lcl|Aclame:pro 239 GPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARY---GLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) Q Consensus 239 ~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~---glp~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) . . ....+...+++.+.+|+..|+... +.+|+.+ |+. |.+- ......++ T Consensus 331 ~-------~---~~~~d~~~~~~~~~~l~~~g~~t~-----nE~r~~l~~~g~~-p~e~-r~~e~l~~------------ 381 (392) T protein:vir:39 331 R-------P---AIDPLGDNYLSTISTATRWGALAE-----NQATFVLQEAGYI-PKDL-PAPENTNK------------ 381 (392) T ss_pred h-------h---hhccCHHHHHHHHHHHHhCCCcCH-----HHHHHHHHhcCCC-cccc-chhcCCCC------------ Confidence 0 0 112355777888999999997653 4556555 664 2111 00000000 Q ss_pred ccccccCCcccCc Q lcl|Aclame:pro 316 GQRQGAALPSRSP 328 (355) Q Consensus 316 ~~~~~~~~~~~~~ 328 (355) ..+++++...| T Consensus 382 --~~~Gd~~~p~p 392 (392) T protein:vir:39 382 --KTTGQSNEPVP 392 (392) T ss_pred --CCCCCCCCCCC Confidence 01111111111 No 65 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=99.47 E-value=2.7e-13 Score=89.48 Aligned_cols=278 Identities=9% Similarity=0.004 Sum_probs=162.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeec--CCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQW--GVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~--~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++... |+ +..|.+.|+.+++ +..+.+|+.+.++.. ...+.....+|.+.+|++++....+..||.|.+.. T Consensus 110 ~~~i~r~~~-g~--~~~L~~l~~~~v~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~ 185 (392) T protein:vir:10 110 FAYRWRNAN-GA--DMKWEYLRPSQVN-TYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYS 185 (392) T ss_pred EEEEEECCC-Cc--EEEEEEEcCceeE-EEEcCCCceEEEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHH Confidence 566766432 33 7789999998775 456666654444322 22222345688888888887777778899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) +....-.-....++...+...- +.|-++.++....... ++... ...+...+. .++...++++.|++++ T Consensus 186 ~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~~~~~-----~~~~~----~~~~~~~~~-~~~g~~~vl~~g~~~~ 253 (392) T protein:vir:10 186 LRRESKIQRASDRLTISSLNSS--LNVPGVLTVKGGGLLS-----DKDKA----SRSRSFMKR-SRSGGPVVLDDLEEFT 253 (392) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCCch-----HHHHH----HHHHHHhcc-ccCCCeeecCCCceEE Confidence 9999888888888888888754 3444333332211111 11111 111111111 1223468899999999 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) -++.+.....|.+..++..++|++++..+.-..+.. + .+.+..+-........+.-.++.|++.+|+.|++.+ .+|. T Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~-~-~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~~-~~d~ 330 (392) T protein:vir:10 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ-G-DQQSSIQQISGMYASALNRYLRPAISELEYKLSDHI-SVNM 330 (392) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC-C-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccc Confidence 888776667788899999999999988865444321 1 122223333445566777888888888888775542 2221 Q ss_pred CCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHh---CCCCCCCccccccccccccCCcccccccc Q lcl|Aclame:pro 239 GPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARY---GLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) Q Consensus 239 ~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~---glp~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) . . ....+...+++.+.+|+..|+... +.+|+.+ |+. |.+- ......++ T Consensus 331 ~-------~---~~~~d~~~~~~~~~~l~~~g~~t~-----nE~r~~l~~~g~~-p~e~-r~~e~l~~------------ 381 (392) T protein:vir:10 331 R-------P---AIDPLGDNYLSTISTATRWGALAE-----NQATFVLQEAGYI-PKDL-PAPENTNK------------ 381 (392) T ss_pred h-------h---hhccCHHHHHHHHHHHHhCCCcCH-----HHHHHHHHhcCCC-cccc-chhcCCCC------------ Confidence 0 0 112355777888999999997653 4556555 664 2111 00000000 Q ss_pred ccccccCCcccCc Q lcl|Aclame:pro 316 GQRQGAALPSRSP 328 (355) Q Consensus 316 ~~~~~~~~~~~~~ 328 (355) ..+++++...| T Consensus 382 --~~~Gd~~~p~p 392 (392) T protein:vir:10 382 --KTTGQSNEPVP 392 (392) T ss_pred --CCCCCCCCCCC Confidence 01111111111 No 66 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=99.47 E-value=2.4e-13 Score=89.73 Aligned_cols=323 Identities=14% Similarity=0.094 Sum_probs=162.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce----EEEeecCCCCCCceeeCCccEEEEecCCCCC---ccccc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL----VAIEQWGVFGKATVRIPVDRLVVFVNEREGA---NWLGQ 73 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l----~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~---~p~G~ 73 (355) ..|++|... |+ +..|.+.+|.++. +..+.+|.+ ..+.+.. .+.....++...+|++++....+ .+||. T Consensus 174 ~~~i~rd~~-G~--~~~L~~l~p~~V~-~~~~~~g~~~~~~~~y~~~~-~~~~~~~~~~~eiih~r~n~~~~~~~~~~G~ 248 (547) T protein:vir:63 174 NFEKVFNRN-QS--MVRFVAKDPTTIF-FATTADGKIPDNGNRFVQVI-DQKIVATFNAREMAFAVRNPRSDIYATGYGY 248 (547) T ss_pred EEEEEECCC-Cc--EEEEEEecCceeE-EEECCccccccCceEEEEEc-CCcEEEEeccccEEEecccCCCCcccccccc Confidence 778888643 43 7789999999885 555666643 2233332 33345678888888887765433 57899 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE--EeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC-Ccee-- Q lcl|Aclame:pro 74 SLLRQAYKNWLLKDRFLRIQALVGERNGLGVPI--YQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG-EAAG-- 148 (355) Q Consensus 74 ~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~--~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G-~~~~-- 148 (355) |.+..+......-....++-..|.+.- +.|- +..+..... +. ...+.+++......+| ..++ T Consensus 249 Spi~~~~~~i~~~~~a~~~~~~~f~Ng--~~p~giL~~~~~~~l---s~--------e~~~~lk~~~~~~~~G~~nagk~ 315 (547) T protein:vir:63 249 PELEIALKQFIAHENTEAFNDRFFSHG--GTTRGILQIKAAQQQ---SQ--------HALEIFKREWKNSLSGINGSWQI 315 (547) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcceEEEecCCCCC---CH--------HHHHHHHHHHHHHhcCccccccc Confidence 999999998888888888888888743 3443 332221111 11 1223344433333333 1222 Q ss_pred -EEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc-------CCccc--hhhhHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 149 -GYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG-------DKSTG--SYALGDTF-ASFFTGSLNAV 217 (355) Q Consensus 149 -~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~-------~~~~G--S~Al~~vh-~~v~~~~~~ad 217 (355) ++...|++++-++.+.....|.+..++..++|+.++..+-.-++- ...++ +++..+-+ .......+.-. T Consensus 316 ~vl~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~ 395 (547) T protein:vir:63 316 PVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPL 395 (547) T ss_pred ccccCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHH Confidence 333567777777655555568888899999999998775322210 01112 23333322 23456678889 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCcc-HHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccc Q lcl|Aclame:pro 218 MKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKE-QPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD 296 (355) Q Consensus 218 ~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d-~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~ 296 (355) ++.|+..||+.|++.+ + . . -+|.|+..... ..+.++ +.+++..|++. .+++|+.+|+|+..++.| T Consensus 396 ~~~ie~~ln~~L~~~~-----~-~-~-~~~~f~~~~~~~~~~~~~-~~~~~~~g~lT-----~NE~R~~~gl~P~~egGD 461 (547) T protein:vir:63 396 LGFIEDFINKHIVAEF-----G-D-K-YTFQFVGGDIKSELESVK-ILAEKAKVAMT-----VNEVRKELNLPGDVIGGD 461 (547) T ss_pred HHHHHHHHHhhccccc-----C-C-c-eEEEeeccccccHHHHHH-HHHHHhCCCcC-----HHHHHHHhCCCCCCCCCc Confidence 9999999999776532 2 1 1 26677654433 334444 44566778754 489999999976433333 Q ss_pred c-ccccc---------cccCCccccccc-------cccccccCCc-------ccCccccchhHHHHHh-HhhhchHHhhh Q lcl|Aclame:pro 297 G-ADAAA---------AKAAGRRRAKRL-------PGQRQGAALP-------SRSPRADPPRRRGPLR-RRPRHPAHRRC 351 (355) Q Consensus 297 ~-~~~~~---------~~~~~~~~~~~~-------~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 351 (355) . ..+.. ............ .+.....+.+ ......++...+.... ....++..-.. T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 541 (547) T protein:vir:63 462 IPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAGKQGMKGDK 541 (547) T ss_pred eeecccccccccccccccCCccccchhhccccccccCCCCCCCCCCCCCCcccCCCcCccccccCccccchhhhhcCCCC Confidence 2 21100 000000000000 0000000000 0000000000000000 00000000000 Q ss_pred cCCC Q lcl|Aclame:pro 352 APDG 355 (355) Q Consensus 352 ~~~~ 355 (355) --|+ T Consensus 542 ~~~~ 545 (547) T protein:vir:63 542 PNDW 545 (547) T ss_pred cccc Confidence 0011 No 67 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=99.46 E-value=4e-13 Score=88.54 Aligned_cols=325 Identities=13% Similarity=0.064 Sum_probs=163.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce----EEEeecCCCCCCceeeCCccEEEEecCCCC---Cccccc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL----VAIEQWGVFGKATVRIPVDRLVVFVNEREG---ANWLGQ 73 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l----~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~---~~p~G~ 73 (355) ..|+++... |+ |..|.+.+|.++. +..+.+|.+ ..+.+.. .|.....++...+|++++.... ..+||. T Consensus 178 y~~i~rd~~-G~--~~~L~~l~p~~V~-v~~~~~g~~~~~~~~y~~~~-~g~~~~~~~~~eiiH~~~n~~~~~~~~~~G~ 252 (551) T protein:vir:80 178 NFEKVFNRN-QS--MVRFVAKDPTTIF-FATTADGKIPDNGNRFVQVI-DQKIVATFNAREMAFAVRNPRSDIYATGYGY 252 (551) T ss_pred EEEEEECCC-Cc--EEEEEEeCCceeE-EEECCccccccCceEEEEEe-CCcEEEEEcccceEEecccCCCCcccccccc Confidence 778888653 43 7889999999885 556666653 2233432 2334557888888888765543 357899 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCC-cee--EE Q lcl|Aclame:pro 74 SLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE-AAG--GY 150 (355) Q Consensus 74 ~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~-~~~--~v 150 (355) |.+..+......-....++-..|...- +.|-++-.+..... .+. ...+.+++......+|. +++ .+ T Consensus 253 spi~~a~~~i~~~~a~~~~~~~~f~Ng--~~p~giL~~~~~~~-lt~--------e~~~~lk~~~~~~~~G~~nag~~~v 321 (551) T protein:vir:80 253 PELEIALKQFIAHENTEAFNDRFFSHG--GTTRGILQIKAAQQ-QSQ--------HALEIFKREWKNSLSGINGSWQIPV 321 (551) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcceEEEEcCCCC-CCH--------HHHHHHHHHHHHHhcCccccCcccc Confidence 999999888888777877777777643 34433322211100 111 12233444443333332 222 23 Q ss_pred c-cCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc-------CCccc--hhhhHHHHH-HHHHHHHHHHHH Q lcl|Aclame:pro 151 I-PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG-------DKSTG--SYALGDTFA-SFFTGSLNAVMK 219 (355) Q Consensus 151 ~-p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~-------~~~~G--S~Al~~vh~-~v~~~~~~ad~~ 219 (355) + ..|++++-++.+.....|.+..++..++|++++..+-.-++- ...++ +++-.+-+. ......+.-.++ T Consensus 322 l~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~ 401 (551) T protein:vir:80 322 VSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLG 401 (551) T ss_pred ccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHH Confidence 4 567887777655555668888999999999998765321110 01112 233333333 445667888999 Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccc-c Q lcl|Aclame:pro 220 HIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD-G 297 (355) Q Consensus 220 ~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~-~ 297 (355) .|+..||+.|++.+ + .. -+|.|+.... +..+.++. .+++..|++. .+++|+.+|+|+..++.| . T Consensus 402 ~ie~~ln~~L~~~~-----~--~~-~~f~f~~~~~~~~~~~~~~-~~~~~~g~lT-----~NE~R~~~gl~P~~egGD~~ 467 (551) T protein:vir:80 402 FIEDFINKHIVAEF-----G--DK-YTFQFVGGDIKSELESVKI-LAEKAKVAMT-----VNEVRKELNLPGDVIGGDIP 467 (551) T ss_pred HHHHHHHhhhcccc-----C--Cc-eEEEeeccChhhHHHHHHH-HHHHhcCCcC-----HHHHHHHhCCCCCCCCCcee Confidence 99999999776542 2 11 2677765443 33344443 3466667653 489999999975333333 2 Q ss_pred ccccc-cc--------cCCccccccccccccccCCcccCcccc--------------chhHHHHHh-HhhhchHHhhhcC Q lcl|Aclame:pro 298 ADAAA-AK--------AAGRRRAKRLPGQRQGAALPSRSPRAD--------------PPRRRGPLR-RRPRHPAHRRCAP 353 (355) Q Consensus 298 ~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~ 353 (355) ..+.. .. ..+............+..+....+.+. +...+.... ....++..-..-- T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (551) T protein:vir:80 468 LNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAGKQGMKGDKPN 547 (551) T ss_pred ecccccccccccccccCcchhhhhhccccccCcCCCCCCCCCCCCCCccccCCCccccccccCccccchhhhhcCCCCcc Confidence 21110 00 000000000000000000000000000 000000000 0000000000000 Q ss_pred CC Q lcl|Aclame:pro 354 DG 355 (355) Q Consensus 354 ~~ 355 (355) |+ T Consensus 548 ~~ 549 (551) T protein:vir:80 548 DW 549 (551) T ss_pred cc Confidence 11 No 68 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=99.42 E-value=2e-12 Score=84.69 Aligned_cols=278 Identities=9% Similarity=0.023 Sum_probs=162.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCc-eEEE-eecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG-LVAI-EQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~-l~~~-~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.+|++... | .+..|.+.|+.+++ +..++++. +.+. +.....+.....+|...+||+++....+..+|.|.+.. T Consensus 104 ~~~i~r~~~-g--~~~~l~~i~~~~v~-v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~ 179 (386) T protein:vir:49 104 FAYRWRNDN-G--RDMKWEYLRPSQVS-FNRLDNQNGLYYNITFDDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMA 179 (386) T ss_pred EEEEEECCC-C--cEEEEEEecCceeE-EEEcCCCceEEEEEEEcCccccceeEEccccEEEecCCCCCCccccccHHHH Confidence 678888543 3 36788889988775 34455444 4332 22222333456789999988887766677899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) +....-.-....++...+...- +.|-++.+.......++ .+. +.+...++..++...++++.|++++ T Consensus 180 ~~~~i~~~~~~~~~~~~~~~ng--~~~~~il~~~~~~~~~~-------~~~----~~~~~~~~~~n~g~~~vl~~g~~~~ 246 (386) T protein:vir:49 180 LGREFNIQKASDKLTISALKNA--LNANGILKIKGGGLLDF-------KTK----VSRSRQAMKQMQGGPLVLDDLEDFT 246 (386) T ss_pred HHHHHHHHHHHHHHHHHHHHcc--CCccEEEEeCCCCChHH-------HHH----HHHHHHHhccCCCCceecCCCceEE Confidence 9998887777777777777653 34543333322211111 111 1122223334455678999999998 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) -++.+.....|.+..++...+|++++..+--..+.. +.+++.++.........+.--++.++..||+.|.+. T Consensus 247 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~~~~~~~~~~~~~~~i~~~l~~i~~~~~~~l~~~------ 318 (386) T protein:vir:49 247 PLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGD--GDQQSSLEMIYNIYFKSVSRYLRPFVSEMSKKLSCE------ 318 (386) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------ Confidence 887666666788889999999999988865434322 234444544455555566666677777777655332 Q ss_pred CCcccccEEEecC---CCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccccc Q lcl|Aclame:pro 239 GPEEPAPRLVPAQ---LGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) Q Consensus 239 ~~~~~~P~~~~~~---~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) +.|+. ...+....+..+.+|+..|+.. .+++|+.++-..-...+..... .+... T Consensus 319 --------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t-----~nE~r~~l~~~~~~~~~~~~~~----~~~~~------ 375 (386) T protein:vir:49 319 --------VDVDISPAVDPTGSNYISLINSMVKSGTLA-----QNQGLYILQQAEILPKELPDGK----NPNRT------ 375 (386) T ss_pred --------hcccchhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHHhhCCCCCCcCcchh----ccCCC------ Confidence 22321 2235577889999999999865 4678887753211111110000 00000 Q ss_pred ccccccCCcccC Q lcl|Aclame:pro 316 GQRQGAALPSRS 327 (355) Q Consensus 316 ~~~~~~~~~~~~ 327 (355) ...+++.+.+. T Consensus 376 -~~~gGd~~~~~ 386 (386) T protein:vir:49 376 -SLKGGEINEQD 386 (386) T ss_pred -CCCCCCCCCCC Confidence 01111111111 No 69 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=99.42 E-value=1.7e-12 Score=85.04 Aligned_cols=328 Identities=8% Similarity=-0.038 Sum_probs=162.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE---------E-EeecCCCCCCceeeCCccEEEEecCCCCCcc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV---------A-IEQWGVFGKATVRIPVDRLVVFVNEREGANW 70 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~---------~-~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p 70 (355) ++=++|... ...+..+...++..+....+.+.+... + +... .+.....+|...+|++++....+.+ T Consensus 207 ~~~~~~g~~--~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~eViHir~~~~~~g~ 282 (651) T protein:vir:99 207 RYFGEAGDR--YRGQEVVIDESGDEPTIRYREDEESEREPIFVDRETGDVTTG--DANGLENRPANELIFIPNPSILEDD 282 (651) T ss_pred ceEEEeecc--ccceeeeeccCCcceeEEeccCcceeeeeecccceeeeEEEc--CCCceeEecccceEEecCCCCCCCc Confidence 111223211 111222222222222111111111100 0 1111 1122346788888888877666788 Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEE Q lcl|Aclame:pro 71 LGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGY 150 (355) Q Consensus 71 ~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v 150 (355) ||.|.+..+......-....++...|...- ++|-++...... ..+.+ ..+.+++...+...|....++ T Consensus 283 ~G~spl~~a~~~i~~a~~a~~~~~~~f~NG--~~p~gil~~~~~--~ls~e--------~~~~lr~~~~~~~~nagk~~v 350 (651) T protein:vir:99 283 YGVPDWVSAIRTISADEAAKDYNRDFFDND--TIPRMVIKVTGG--ELSEE--------SKRDLRQMLNGLREESHRAVV 350 (651) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEecCC--CCCHH--------HHHHHHHHHHHHhccCCceEE Confidence 999999999998888888888888888653 344333322111 11111 123344444444444445556 Q ss_pred ccC-----------CceEEEeccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH-HHHHHHH Q lcl|Aclame:pro 151 IPH-----------GANFTLTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF-TGSLNAV 217 (355) Q Consensus 151 ~p~-----------~~~ie~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~-~~~~~ad 217 (355) ++. |++++-++.+. +...|.+..++...+|++++..+-..+ +....+++|..+.+...+ ...+.-. T Consensus 351 L~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~afgVPp~~l-G~~~~~~~sn~E~~~~~f~~~tL~P~ 429 (651) T protein:vir:99 351 LEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKVLEVPPVKI-GVTDSANRSNSDQQDKDFALEVIQPE 429 (651) T ss_pred eecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHHhCCCHHHh-ccCCCCCcccHHHHHHHHHHHHHHHH Confidence 654 66666665443 345688888999999999998875433 233346677777666554 5688999 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC---ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC- Q lcl|Aclame:pro 218 MKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG---KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE- 293 (355) Q Consensus 218 ~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~---~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~- 293 (355) ++.|+..||+.|++...... ...-+|.|+... .|.++.++.++.+++.|++. .+++|+.+|+|+-.+ T Consensus 430 ~~~ie~eln~kLl~~~e~~~----~~~i~~ef~~~~llr~D~~~~~e~~~~~i~~G~~T-----~NE~R~~lglppi~~~ 500 (651) T protein:vir:99 430 QHTFAEWLYQIIHQQALGVT----DWTIEYELRGADQPKQEAQLAEQRVRAMRLAGVGL-----VDEAREELGLDPLGEP 500 (651) T ss_pred HHHHHHHHHHhhcCcccccc----CceEEEEeccchhhhccHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCc Confidence 99999999998876532221 111245554322 36788999999999999865 478999999985432 Q ss_pred -ccccccccccccCCccccccc--cccccccCCcccCccccchhHHHHHhHh---hhchHHhhhcCCC Q lcl|Aclame:pro 294 -RDDGADAAAAKAAGRRRAKRL--PGQRQGAALPSRSPRADPPRRRGPLRRR---PRHPAHRRCAPDG 355 (355) Q Consensus 294 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 355 (355) ++....+.. ........+.+ ++.......+....+..+.....+.... ..........-=| T Consensus 501 ~gd~~l~~~~-~~~~g~~~~gge~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~~~~~~v~ss~~~~~g 567 (651) T protein:vir:99 501 YGEMTLSEFE-AEVAGDVAGGGETEAVHEPPEENKIGEREWDTVKSELTTKDPIEQMQFSSSNLDEGL 567 (651) T ss_pred cccccccccc-cccccccccCCCCcccccCccccccccchhhhhhhhhcccchhhhhhHHHHHHHhhc Confidence 222221110 00000111110 1111000101111111111111111110 0000000000112 No 70 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=99.41 E-value=5.7e-13 Score=87.69 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=157.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..+++-...+| .|..|.+.+|.+++ +..+++|++.+... +. .. ...+||+++....+..||.|.+..+. T Consensus 140 y~~~i~r~~~G--~~~~L~pl~p~~v~-v~~~~~g~~~y~~~----~~---~~-~~eiiHir~~~~~~~~~G~spi~~~~ 208 (409) T protein:vir:83 140 FVLPMAHGSDG--YPIRFRVVPPWLVN-VELKKGARREYRIG----GL---NV-TDEILHIRYQGNTADAHGHGPLESAA 208 (409) T ss_pred EEEEEEECCCC--cEEEEEEECCcceE-EEEcCCceEEEEEc----cc---cC-ccceEEeCCCCCCCCcccccHHHHHH Confidence 33433222234 47789999998876 67777777655321 11 11 23466666666667889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc-eeEEccCCceE-E Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA-AGGYIPHGANF-T 158 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~-~~~v~p~~~~i-e 158 (355) ...-......++-..|...- ..|-++.++.... +++. .+.+++-.....+|+. ..+++..|++. + T Consensus 209 ~~i~~~~a~~~~~~~~f~ng--a~p~gil~~~~~l---s~e~--------~~~~~~~~~~~~~~nag~~~il~~g~~~~~ 275 (409) T protein:vir:83 209 PRQVVIGLLQKYVQNLAETG--GVPLYWLGVERRL---SETE--------AVDLMDRWIESRSKYAGHPALVTGGATLNQ 275 (409) T ss_pred HHHHHHHHHHHHHHHHHhcC--CCcceEeecCCCC---CHHH--------HHHHHHHHHHhhCCccCccceecCCccccc Confidence 88888777777777776632 3555444443221 1111 1122222222333332 23677788776 3 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCC--ccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDK--STGSYALGD-TFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~--~~GS~Al~~-vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) .++.+.....|.+.-++..++|++++..+-..++..+ +..+|+-.+ .........+.-.++.|+..||+.|++. T Consensus 276 ~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~--- 352 (409) T protein:vir:83 276 AKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPS--- 352 (409) T ss_pred ccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--- Confidence 5555544455777778889999999998754443211 122344333 3333444577788888999999877542 Q ss_pred hCCCCcccccEEEecCC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAA 303 (355) Q Consensus 236 lNf~~~~~~P~~~~~~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~ 303 (355) ..+-+|.++.. ..|.++.++.++++++.|+.. .|++|+..|+|+.+.+++ +....- T Consensus 353 ------~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT-----~NE~R~~~glpp~~ggd~-l~~~gv 409 (409) T protein:vir:83 353 ------PQHLELNRDDYTRPSLVERATAYKIMIEAGVME-----PNEARAMERLHSEAAAVR-LSGGGV 409 (409) T ss_pred ------CcEEEeehhhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCcc-cCCCCC Confidence 12223333332 246788999999999999875 478999999986444333 221111 No 71 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=99.40 E-value=2.8e-12 Score=83.92 Aligned_cols=298 Identities=11% Similarity=0.020 Sum_probs=164.5 Q ss_pred CeEEEEeeeC-CEEEEeeeeecCccceeeeeecCCCceEEEee-----cCCCCCCceeeCCccEEEEecCCCC-----Cc Q lcl|Aclame:pro 1 MFEQVYRIEN-GRARLGKLAWRPPRTISRFDVAPDGGLVAIEQ-----WGVFGKATVRIPVDRLVVFVNEREG-----AN 69 (355) Q Consensus 1 V~Eivw~~~~-g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q-----~~~~g~~~~~ip~~k~i~~~~~~~~-----~~ 69 (355) +.+|++...+ +.=.+..|.+.|+.+++ +..+.++..+.... .-..+.....+|++.+|++++.... +. T Consensus 145 y~~i~r~~~~~~~G~~~~L~~l~~~~v~-v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~ 223 (460) T protein:vir:10 145 YFYLMSPDDGINAGVPSQMYVLPAHLIK-IVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSH 223 (460) T ss_pred EEEEEecCCCccCceeEEEEEEcCceEE-EEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCc Confidence 5666664321 22246789999998775 44555554332111 0012334567899999988765432 45 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---Cc Q lcl|Aclame:pro 70 WLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EA 146 (355) Q Consensus 70 p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~ 146 (355) .+|.|.+..+......-....++...+... | +.|-++...+...+ ++ ..+.+++......+| .. T Consensus 224 ~~G~sp~~~~~~~i~~~~~~~~~~~~~f~n-g-~~~~~i~~~~~~l~---~e--------~~~~~~~~~~~~~~g~~n~g 290 (460) T protein:vir:10 224 LYGMSPIRAILRNINSQNSTIDNNVKTMQN-G-GVFGFIHGGSTGLT---QP--------QADSLKQRLTEMDKSPDRLS 290 (460) T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCcceeeecCCCCC---HH--------HHHHHHHHHHHHhcCccccC Confidence 789999999988888877777777777764 3 34544433332211 11 122333333333323 23 Q ss_pred eeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 AGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTF-ASFFTGSLNAVMKHIADV 224 (355) Q Consensus 147 ~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh-~~v~~~~~~ad~~~i~~~ 224 (355) ..++++.|++++-++.+.....|.+..++..++|++++..+--..+ .++++.+++-.+-+ .......+.-.++.|++. T Consensus 291 ~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ 370 (460) T protein:vir:10 291 QIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQA 370 (460) T ss_pred CceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 4688999999988877666667888889999999999877643232 22222345544433 344555788889999999 Q ss_pred HHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCC-CCccccccccc Q lcl|Aclame:pro 225 TQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAP-AERDDGADAAA 302 (355) Q Consensus 225 ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~-~~~~~~~~~~~ 302 (355) ||+.|++..- ... ...+.|+...- ....-.+....+++.|+.. .+++|+.+|+|+- .++.|..-... T Consensus 371 ln~kl~~~~~-----~~~-~~~i~~d~~~l~~l~~d~~~~~~~~~~g~~T-----~NE~R~~~g~~pi~~~~gD~~~~~~ 439 (460) T protein:vir:10 371 FDKKFIKRFK-----GYE-NAVIEWDISELPEMQTDMVAMASWLNTIPVT-----PNEIRIAMKYETLNQDGMDIVFMPS 439 (460) T ss_pred HHHhhcCccc-----ccC-CceEEeecchhhhHHHHHHHHHHHHhCCCCC-----HHHHHHHhCCCCCCCCCCCeeeecc Confidence 9998876531 111 12344442221 1222223334467888765 4789999999863 33333221111 Q ss_pred cccCCccccccccccccccCCcccCccccch Q lcl|Aclame:pro 303 AKAAGRRRAKRLPGQRQGAALPSRSPRADPP 333 (355) Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (355) -..+-.... .....+.. ...+ T Consensus 440 n~~~~~~~~---~~~~~~~~-------nq~~ 460 (460) T protein:vir:10 440 NKVRIDDVS---NNLIDSAF-------NQNQ 460 (460) T ss_pred cccchhhcc---cccCCCcc-------cCCC Confidence 111100000 00000000 0000 No 72 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=99.40 E-value=1.7e-12 Score=85.13 Aligned_cols=273 Identities=13% Similarity=0.094 Sum_probs=156.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCC--CCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNER--EGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~--~~~~p~G~~ll~~ 78 (355) +.++++. ...+.+.++.++.. ..+.++....+.. ..+.....+|.+.+||+++-. .....+|.|.+.. T Consensus 103 ~~~i~r~-------~~~~~p~~~~~v~~-~~~~~~~~~~~~~--~~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~ 172 (385) T protein:vir:10 103 YIPLVGQ-------NLEHIPNSDVQINY-LPGNMGIVYTVLE--SNDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLES 172 (385) T ss_pred EEEEEcC-------ceeEeecCCceEEE-EEcCCceEEEEEE--cCCceEEEEccccEEEeccCCCCcccccccccHHHH Confidence 4455432 12244445554432 2233332333222 233345678999988887533 2345689999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCce Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGAN 156 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~ 156 (355) +....-......++...+...- +.|-++.+..... .+++ ..+.+++...++.+|.. ..++++.|++ T Consensus 173 ~~~~i~~~~~~~~~~~~~~~ng--~~~~gil~~~~~~--~~~e--------~~~~~~~~~~~~~~~~n~~~~~vl~~g~~ 240 (385) T protein:vir:10 173 LQNALNLDDKASKSNMSAMENQ--INPAGKLTISNYL--SDGK--------DLESAREEFEKANTGDNSGRLMVLPDGFD 240 (385) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCcceEEEeCCCC--CCHH--------HHHHHHHHHHHHhCccccCCccccCCCce Confidence 9998888777877777777642 3454443332111 1111 12334444445554433 3588999999 Q ss_pred EEEeccCCCcccH-HHHHHHHHHHHHHHHhhhhhcccc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEM-DGPIRYHDEQIARAVLAHFLTLGG-DKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 157 ie~~~~~g~~~~~-~~~i~~~d~~Isk~ilgqtlt~~~-~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++-++.+.....+ .+..++..++|++++..+.-.++. +.+..+++-.+-+...+..-+.-.++.|++.||+.|+. T Consensus 241 ~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~~--- 317 (385) T protein:vir:10 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA--- 317 (385) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--- Confidence 9988765544454 467788899999998887543322 22223444445445555667778888888888876521 Q ss_pred HhCCCCcccccEEEec--CC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCC-CCCccccccccccccCCccc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPA--QL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPA-PAERDDGADAAAAKAAGRRR 310 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~--~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~-~~~~~~~~~~~~~~~~~~~~ 310 (355) +.|+|+ .. ..|.++.++.++++++.|+.. .+++|+.+|++. |.++.+....... . T Consensus 318 ----------~~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~g~~p~p~~~~~~~~~~~~------~ 376 (385) T protein:vir:10 318 ----------PDLELDIKDMLDVDDSALINQVSNLAKSGVLG-----AEQAQFILTRSGFLPDNLPEFKPLTT------Q 376 (385) T ss_pred ----------ceEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCccCCCCCccccCccc------c Confidence 234444 32 247789999999999999875 478999999853 2222111111000 0 Q ss_pred cccccccccccCCccc Q lcl|Aclame:pro 311 AKRLPGQRQGAALPSR 326 (355) Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (355) .+ +++.... T Consensus 377 ~~-------~g~~~dn 385 (385) T protein:vir:10 377 VK-------GGDEGDN 385 (385) T ss_pred cC-------CCCCCCC Confidence 00 1111011 No 73 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=99.39 E-value=3e-12 Score=83.76 Aligned_cols=314 Identities=10% Similarity=0.000 Sum_probs=158.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCc---eEEEeecCCCCCCceeeCCccEEEEecCCC---CCccccch Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG---LVAIEQWGVFGKATVRIPVDRLVVFVNERE---GANWLGQS 74 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~---l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~---~~~p~G~~ 74 (355) -++.+.+...|+ |..|.+.+|.+++ +..+.++. ..+. +. ..+.....++...+|++++... .+.+||.| T Consensus 170 ay~~i~r~~~G~--~~~L~~l~p~~V~-v~~d~~~~~~~~~~~-~~-~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~S 244 (535) T protein:vir:10 170 NIERIFKNDSNE--LDHFNAVDASKVV-ISYSPRSKDQPRKFE-QF-VSETKSVKFSERNLTFINYWNLSDTDRRGYGYS 244 (535) T ss_pred eEEEEEECCCCc--EEEEEEeCCceeE-EEEcCccccCceEEE-EE-ecCceeEEECcccEEEEeccCCCCccccccccc Confidence 233333333443 7789999998885 44554432 2222 22 2234456789999998886543 34678999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCC-cee---EE Q lcl|Aclame:pro 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGE-AAG---GY 150 (355) Q Consensus 75 ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~-~~~---~v 150 (355) .+..+....-.-....++-..|...-+.+--+++.+...+. .. .....+.+++...+..+|. +++ ++ T Consensus 245 pi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~-~l--------s~e~~e~lk~~~~~~~~G~~nag~~~vl 315 (535) T protein:vir:10 245 PVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDA-QA--------NQMMLAGIRRQWTSQGSGLGGAWKIPIL 315 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCc-cc--------CHHHHHHHHHHHHHHhcCcccccccccc Confidence 99999988888888888888888753332223443322111 01 1123344555555554442 222 22 Q ss_pred ccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhH------------HHHHH-HHHHHHHHH Q lcl|Aclame:pro 151 IPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALG------------DTFAS-FFTGSLNAV 217 (355) Q Consensus 151 ~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~------------~vh~~-v~~~~~~ad 217 (355) ...|++++-++.+.....|.+..++..++|++++..+-.-++ ....++|+-+ +.... .....+.-. T Consensus 316 ~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG-~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~ 394 (535) T protein:vir:10 316 AAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEIN-FPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPL 394 (535) T ss_pred cCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhc-cccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH Confidence 235677666665555556888889999999999887643221 1122333221 22222 223457778 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccc Q lcl|Aclame:pro 218 MKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD 296 (355) Q Consensus 218 ~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~ 296 (355) ++.|+..||+.|++.. + ..-+|.|+.... +.+..++..+... .|.+ +.+++|+.+|+|+-+.+|. T Consensus 395 l~~ie~~ln~~Ll~~~-----~---~~~~f~f~~l~~~d~~~r~~~~~~~~-~g~l-----T~NE~R~~~gl~piegGD~ 460 (535) T protein:vir:10 395 LSFIEQVINDKIMRYV-----D---TDYRFSFTLGDAQDKLQEEQVWKLKL-ANGY-----FINEYRKDHGLKTVDGLDV 460 (535) T ss_pred HHHHHHHHhhhccccc-----C---CeEEEEeccccccCHHHHHHHHHHHH-cCCC-----CHHHHHHHhCCCCCCCccc Confidence 8888999998776532 1 113677765444 4455666665444 4543 2589999999987655543 Q ss_pred ccccc---cc--ccCCcccccccccccc--------------------ccCCcccCccccch---hHHHHHhHhh Q lcl|Aclame:pro 297 GADAA---AA--KAAGRRRAKRLPGQRQ--------------------GAALPSRSPRADPP---RRRGPLRRRP 343 (355) Q Consensus 297 ~~~~~---~~--~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~---~~~~~~~~~~ 343 (355) ..... .. ......+..+.+...+ .+..++..+..++. +.+......+ T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:10 461 PGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDYEKGKDDPKSPLPKPSESDDVSNNEDADT 535 (535) T ss_pred cccccchhhcccccccccccCCCCCCCccccCCccccCcccccccccccCCCCCCCCCCcCCCCCccccccccCC Confidence 11100 00 0000000000000000 00000011100000 0000000001 No 74 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=99.36 E-value=1.7e-12 Score=85.12 Aligned_cols=325 Identities=13% Similarity=0.005 Sum_probs=165.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce------EEEeecCCCCCCceeeCCccEEEEecCCCCCccccch Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL------VAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQS 74 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l------~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ 74 (355) +.++++.-.+-.-.|..|.+.+++... +....++.. ...+-....| ...++|...+||+++....+..||.| T Consensus 96 y~~i~r~~r~~~g~p~~l~~l~~~~~~-v~~~~~~~~~~~~~~~~y~~~~~~G-~~~~~~~~dIiHir~~~~~dg~~G~S 173 (723) T protein:vir:94 96 HLWLNYNGRTPAGVPDEIWYVYDRVTT-IVATRAADAVPQAQIIGYVIERTDG-VRVPVLADEMLWLRFSDPYDPLAVMA 173 (723) T ss_pred EEEEEecCCccccceeEEEEecCcceE-EeecCCCccceeeeeeEEEEEecCc-eeEEecccceEEecCCCCCCCccccc Confidence 677776422212246777777776443 222222221 1111111223 23568888888887665567779999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEc--- Q lcl|Aclame:pro 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYI--- 151 (355) Q Consensus 75 ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~--- 151 (355) .+..+....-.-....++...|... | +.|-++-..+. .+++. ....++.+.+...... ...-.+|+ T Consensus 174 pi~~a~~~i~~~~aa~~~~~~~f~N-G-~~p~giL~~~~----l~~e~----~~~~~~~~~~~~~G~~-Nagk~~vL~g~ 242 (723) T protein:vir:94 174 PWKAARAAVDADFYAATWQRQSFKN-G-ARPGGVVNLGD----MDEQT----FTKTVAAFRSQVEGVQ-NAGRHLLIAGQ 242 (723) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CCcceEEEcCC----CCHHH----HHHHHHHHHHHhhchh-hcCcceeeccc Confidence 9999888877777777777777753 3 44543333321 12222 2222222322221110 01112333 Q ss_pred -------cCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhh-hccccCCccchhhhHHHH-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 -------PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHF-LTLGGDKSTGSYALGDTF-ASFFTGSLNAVMKHIA 222 (355) Q Consensus 152 -------p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqt-lt~~~~~~~GS~Al~~vh-~~v~~~~~~ad~~~i~ 222 (355) .+|++++-++.+.....|.+..++..++|++++..+- +.. + +++++-.+-+ .......+.-.++.|+ T Consensus 243 ~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~-~---~st~sN~e~~~~~f~~~tL~P~~~~ie 318 (723) T protein:vir:94 243 GSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALL-G---GSTYENQAEAKAAVWTETLIPQMEVMA 318 (723) T ss_pred ccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcC-C---CCCcccHHHHHHHHHHHHHHHHHHHHH Confidence 4678877776655555688888899999999998884 332 2 2233322222 3344677888999999 Q ss_pred HHHHHHHHHHHHHhCCCCcccccEEEecCC---CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccc- Q lcl|Aclame:pro 223 DVTQQHVVEDLVDQNWGPEEPAPRLVPAQL---GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGA- 298 (355) Q Consensus 223 ~~ln~~li~~l~~lNf~~~~~~P~~~~~~~---~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~- 298 (355) ..||+.|++.. +. . -+|.|+.. ..|.++.++.+.++++.|++.+ |++|+.+|+|+-+.++... T Consensus 319 ~~ln~~Ll~~~-----g~-~--~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~-----NE~R~~lglpPi~gGd~~~~ 385 (723) T protein:vir:94 319 SITDLQLLPDI-----GW-T--VEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMV-----DEVRATIGLDPLPGGIGQMT 385 (723) T ss_pred HHHhHhhcccc-----cC-c--eEEeecchhhhhcCHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCCCCCcccce Confidence 99999887642 11 1 25666643 2577889999999999998764 7899999997654443221 Q ss_pred -ccc-ccccCCccccc-----------------------cccccccccCCcccCccccchh---HHHHHhHhhhchHHh- Q lcl|Aclame:pro 299 -DAA-AAKAAGRRRAK-----------------------RLPGQRQGAALPSRSPRADPPR---RRGPLRRRPRHPAHR- 349 (355) Q Consensus 299 -~~~-~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~- 349 (355) .+. ....+.+.+.+ ..+...+........+.+.+.. ..+.++.+..--+-+ T Consensus 386 ~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (723) T protein:vir:94 386 LTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPELPVRATTVLHHDPGPDPQQTLYERLEALLQPLLVELGRRQ 465 (723) T ss_pred eccccccccCCCCCCccchhhhHhhhhhccccccccCcCCCCCCCCCCCCCCcccCCchhHHHHHHHHHhhhHHHHHHHH Confidence 110 00000000000 0011111000011111111111 112222221111111 Q ss_pred ------hhcCCC Q lcl|Aclame:pro 350 ------RCAPDG 355 (355) Q Consensus 350 ------~~~~~~ 355 (355) ...+.+ T Consensus 466 ~~~~~~~~~~~~ 477 (723) T protein:vir:94 466 AAVTLREFDLLM 477 (723) T ss_pred HHHHHHhhchhh Confidence 111222 No 75 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=99.36 E-value=1e-11 Score=80.79 Aligned_cols=281 Identities=9% Similarity=0.045 Sum_probs=162.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEee--cCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQ--WGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q--~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++.. +| .+..|.+.|+.++. +..+.+|+.+..+- .+........+|...+||+++....+.+||.|.+.. T Consensus 104 ~~~i~r~~-~g--~~~~L~~l~~~~v~-v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~ 179 (386) T protein:vir:48 104 FAYRWRNE-NG--RDMKWEYLRPSQVS-FNRLDNKDGIYYNITFDDPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMA 179 (386) T ss_pred EEEEEECC-CC--cEEEEEEecCceeE-EEEcCCCceEEEEEEecCccccceeEecCccEEEecCCCCCCceeeccHHHH Confidence 66777653 23 47788888888775 44555555433222 111112335688889998887777777899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) +....-.-....++...+...- +.|-++......... + ..+..++.... ...++...++++.|++++ T Consensus 180 ~~~~i~~~~~~~~~~~~~~~ng--~~~~~ii~~~~~~~~---e----~~~~~~~~~~~----~~~n~g~~~vl~~g~~~~ 246 (386) T protein:vir:48 180 LSRELNIQKASDKLTLNSLKNA--LNANGILKIKGGGLL---D----FKTKLSRSRQA----MKQMQGGPLVLDDLEEFT 246 (386) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCcceEEEeCCCCCH---H----HHHHHHHHHHH----hhcCCCCceecCCCceEE Confidence 9888777777777777777753 445444333322111 1 11112222222 233444578999999998 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) -++.+.....|.+..++..++|++++..+....+. .++++.+ .+-........+.-.++.|++.||+.|++.+ +++. T Consensus 247 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~~~~-e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~-~~~~ 323 (386) T protein:vir:48 247 PLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGG-QGDQQSS-LEMSLDLYNKAVSRYLRPFLSELSQKLSCDV-DADI 323 (386) T ss_pred EcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hcch Confidence 88766555668888899999999998887544432 1222222 2233445555667778888888988776542 1111 Q ss_pred CCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccc Q lcl|Aclame:pro 239 GPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQR 318 (355) Q Consensus 239 ~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (355) . + ....+...++..+.+|+..|+.. .+++|+.+|.+.-.+++..... . ....+.+ T Consensus 324 ~-----~-----~~~~d~~~~~~~~~~l~~~g~~t-----~nE~r~~lg~~~~~~~~~~~~~-~---~~~~~~~------ 378 (386) T protein:vir:48 324 L-----P-----AVDPTGSNSVSRINSMVKSGTLA-----QNQGLYILQQAEILPKELPEGE-N---PNKTTLK------ 378 (386) T ss_pred h-----h-----hhccChHHHHHHHHHHHhCCCcC-----HHHHHHHhhcCCCCCccchhhc-C---CCCCccC------ Confidence 0 1 11234556677888999999765 4688999987643332211100 0 0000001 Q ss_pred cccCCcccC Q lcl|Aclame:pro 319 QGAALPSRS 327 (355) Q Consensus 319 ~~~~~~~~~ 327 (355) +++.+... T Consensus 379 -gGd~~~~~ 386 (386) T protein:vir:48 379 -GGEINGED 386 (386) T ss_pred -CCCCCCCC Confidence 11110000 No 76 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=99.35 E-value=5.1e-12 Score=82.49 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=154.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCC--CCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNERE--GANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~--~~~p~G~~ll~~ 78 (355) +.+++-. ...+.+.++.++. ...+.++ +.+..... .+.....++...+||+++... ....||.|.+.. T Consensus 103 ~~~i~~~-------~~~~~p~~~~~v~-~~~~~~~-~~~~~~~~-~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~ 172 (383) T protein:vir:10 103 YIPLVGQ-------NLEHIPNSDVQIN-YLPGNMG-IVYTVLES-NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLES 172 (383) T ss_pred EEEEEcC-------ceeEeecCcceEE-EEEcCCc-eEEEEEEc-CCceEEEEcccceEEeccCCCCcccccccccHHHH Confidence 3443321 1123333443332 2233333 33332222 233456788889888875332 334689999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCce Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGAN 156 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~ 156 (355) +......-....++...+...- +.|-++....... .+++ ..+.+++...++.+|.. ..++++.|++ T Consensus 173 ~~~~i~~~~~~~~~~~~~f~ng--~~~~~il~~~~~~--~~~e--------~~~~~~~~~~~~~~~~n~~~~~vl~~g~~ 240 (383) T protein:vir:10 173 LQNALNLDDKASKSNMSAMENQ--INPAGKLTISNYL--SDGK--------DLESAREEFEKANTGDNSGRLMVLPDGFD 240 (383) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCcceEEEeCCCC--CCHH--------HHHHHHHHHHHHhCccccCCccccCCCce Confidence 9998888777888888887753 3443333322111 1111 12334444444444432 4588999999 Q ss_pred EEEeccCCCcccH-HHHHHHHHHHHHHHHhhhhhcccc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 FTLTGVQGKLPEM-DGPIRYHDEQIARAVLAHFLTLGG-DKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 157 ie~~~~~g~~~~~-~~~i~~~d~~Isk~ilgqtlt~~~-~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++-++.+.....+ .++.++..++|+.++..+.-..+. +.+..+++-.+-+...+...+.-.++.|++.||+.|+ T Consensus 241 ~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~---- 316 (383) T protein:vir:10 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMN---- 316 (383) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhC---- Confidence 9988766554554 577888899999998887533322 2222334444444555666777788888888887652 Q ss_pred HhCCCCcccccEEEec--CC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPA--QL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRA 311 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~--~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~ 311 (355) + +.++|+ .. ..|.++.++.+.++++.|+.. .+++|+.+|++.-..++........ .+. T Consensus 317 ----~-----~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t-----~nE~R~~lg~~p~~~~d~~~~~~~~-----~~~ 377 (383) T protein:vir:10 317 ----A-----PDLELDIKDMLDVDDSILINQVSNLAKSGVLG-----AEQAQFILTRSGFLPDNLPEFKPLT-----NET 377 (383) T ss_pred ----C-----ceEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCcccCCcccccCCCc-----ccC Confidence 1 234443 32 247788999999999999865 4789999999754433321111000 000 Q ss_pred cccccc Q lcl|Aclame:pro 312 KRLPGQ 317 (355) Q Consensus 312 ~~~~~~ 317 (355) +.++.. T Consensus 378 ~gGd~e 383 (383) T protein:vir:10 378 KGGDDK 383 (383) T ss_pred CCCCCC Confidence 001111 No 77 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=99.35 E-value=2.2e-12 Score=84.50 Aligned_cols=274 Identities=8% Similarity=-0.007 Sum_probs=161.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCC-ceEEE-eecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDG-GLVAI-EQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g-~l~~~-~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.++++... | .+..|.+.||.+++. ..+.++ ++.+. ...+..+.....++...+||+++....+..+|.|.+.. T Consensus 104 ~~~i~r~~~-g--~~~~L~~l~~~~v~v-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~ 179 (384) T protein:vir:49 104 FAYRWRNEN-G--RDMKWEYLRPSQVSF-NRLDNQNGLYYNITFDDPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMA 179 (384) T ss_pred EEEEEECCC-C--cEEEEEEEcCceeEE-EEcCCCceEEEEEEecCccccceeEecCccEEEecCCCCCCceeeccHHHH Confidence 778887543 3 477899999987763 344444 44332 21122222346789999998887766777899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) +....-.-....++...+...- +.|-++.+....... ++..+ ........ ..+....++++.|++++ T Consensus 180 ~~~~i~~~~~~~~~~~~~~~ng--~~~~~il~~~~~~~~------~~~~~-~~~~~~~~----~~n~~~~~vl~~g~~~~ 246 (384) T protein:vir:49 180 LGRELNIQKASDKLTLNALKNA--LNANGILKIKGGGLL------DFKTK-QSRSRQAM----KQMQGGPLVLDDLEDFT 246 (384) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCCh------HHHHH-HHHHHHhc----ccCCccceecCCCceEE Confidence 9988877777777777777653 445433333221111 11111 11111111 12344578899999988 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h- Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD-Q- 236 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~-l- 236 (355) -++.+.....+.+..++..++|++++..+.-..+.. + ++.+..+...+.....+..-++-+...|+..|-+.+.. + T Consensus 247 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-~-~~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l~~~l~~~~~ 324 (384) T protein:vir:49 247 PLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGE-G-DKQSSLEMIYNIYFKAVSRFLRPFVSELSKKLSCEVDADIL 324 (384) T ss_pred EccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCC-C-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhh Confidence 887666666788888999999999988865333222 1 12222333445555666666677777776666554411 1 Q ss_pred -CCCCcccccEEEecC-CCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccc-ccc Q lcl|Aclame:pro 237 -NWGPEEPAPRLVPAQ-LGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD-GAD 299 (355) Q Consensus 237 -Nf~~~~~~P~~~~~~-~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~-~~~ 299 (355) .......+.+|.++. ...+..+..++..+|...|+.+ +++|+..|+|+-+.+|. ..- T Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~------ne~r~~~~~~p~~gGd~~~~~ 384 (384) T protein:vir:49 325 PAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP------KDLPEGETDSTLKGGETNEQY 384 (384) T ss_pred hhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC------hhHHHHcCCCCCCCCCCCCCC Confidence 111111122222221 1234566788888888888753 46899999975433332 222 No 78 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=99.33 E-value=9.1e-12 Score=81.12 Aligned_cols=279 Identities=14% Similarity=0.058 Sum_probs=155.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCC-CccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREG-ANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~-~~p~G~~ll~~~ 79 (355) +.++++...++ .+..|.+.++.++. +..+ .+.+.+.. .. . +..+++..+|++++.... +..+|.|.+..+ T Consensus 128 ~~~i~r~~~g~--~~~~L~~l~~~~v~-~~~~-~~~~~y~~-~~-~---~~~~~~~evih~k~~~~~~~~~~G~s~~~~~ 198 (413) T protein:vir:96 128 NAVVKPQVSGD--KIIGLTPISPYKVT-FNVS-DDDLDYSI-TF-D---NKEYDPSTLLHFVLNPSIERPFIGTGYKVAL 198 (413) T ss_pred EEEEEEcCCCC--ceEEEEEecCceeE-EEEc-CCeEEEEE-ee-c---CcEEchhhEEEEeccCCCCCccccccHHHHH Confidence 66666654443 35568888888665 3333 33443322 11 1 235678888888865443 445799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---CceeEEccCCce Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAAGGYIPHGAN 156 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~~~v~p~~~~ 156 (355) ......-....++...+....+ .|-++........ ++ . .+.+++......+| +...++++.|+. T Consensus 199 ~~~i~~~~~~~~~~~~~~~ng~--~p~gil~~~~~l~---~e----~----~~~~~~~~~~~~~g~~n~g~~~vl~~~~~ 265 (413) T protein:vir:96 199 KDIVGNLKQASVTKKGFMASEY--MPNLIVSVDSDSD---EL----S----DEEGRENFEEMYLKRKEAGKPWIIPEGMV 265 (413) T ss_pred HHHHHHHHHHHHHHHHHHhccC--CccEEEEeCCCCC---HH----H----HHHHHHHHHHHhcCccccCceeeecCCcc Confidence 9988888888888888887643 4433333322211 11 1 12233333333323 223467777653 Q ss_pred -EEEec-cCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 -FTLTG-VQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 157 -ie~~~-~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +.-+. .+.....+.+..++..++|++++..+.-..+. +.++.+ .........+.-.++.|++.||+.|++. T Consensus 266 ~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~--~~~~~~---~~~~~~~~~l~P~~~~ie~~ln~~ll~~-- 338 (413) T protein:vir:96 266 NVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGV--GTYNKD---EFNNFINTKIMSIAQVIQQTYNKLIVEE-- 338 (413) T ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCC--CcchHH---HHHHHHHHHHHHHHHHHHHHHHHhhCCC-- Confidence 32222 12233446677788889999998887543321 123333 2344556678888889999999876431 Q ss_pred HhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCcccccc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) ..+-+|.++... .|.++.++++.++++.|+.. .+++|+.+|+|+-+.++....... ..+....... T Consensus 339 -------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~g~~p~~~gd~~~~~~n-~~~~~~~~~~ 405 (413) T protein:vir:96 339 -------DMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALR-----RNEFRNWVGMPPDAEMDDLLVLEN-YLQQKDLVNQ 405 (413) T ss_pred -------CcEEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCcceeeeccc-ccchhhcccc Confidence 222234333332 36788999999999999875 478999999986443333221111 1111100000 Q ss_pred ccccccccCC Q lcl|Aclame:pro 314 LPGQRQGAAL 323 (355) Q Consensus 314 ~~~~~~~~~~ 323 (355) . ...++++ T Consensus 406 ~--~~~~~dt 413 (413) T protein:vir:96 406 K--KLIQDET 413 (413) T ss_pred c--CCCCCCC Confidence 0 0000111 No 79 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=99.32 E-value=2e-11 Score=79.29 Aligned_cols=331 Identities=13% Similarity=0.081 Sum_probs=159.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCC-------Cc-eEEEeec-------CCCCCCceeeCCccEEEEecCC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPD-------GG-LVAIEQW-------GVFGKATVRIPVDRLVVFVNER 65 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~-------g~-l~~~~q~-------~~~g~~~~~ip~~k~i~~~~~~ 65 (355) +.|+++... | .+..|.+.|+.+++ ...+.+ +. ..+...+ ...|.....+|...+|+++... T Consensus 108 yv~i~r~~~-G--~~~~L~~i~~~~V~-v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~ 183 (540) T protein:vir:41 108 TLEVVRDDQ-G--EPVRLDYIPAHTVR-VHRDGSRYMQTWDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPS 183 (540) T ss_pred EEEEEECCC-C--cEEEEEEeCCcceE-EeEcCceeEeeecCceeeeeecccccceeeccccccceeecccceEEecCCC Confidence 778877543 3 36678888887664 222211 11 1111110 1123334567888888877666 Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 66 EGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG- 144 (355) Q Consensus 66 ~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G- 144 (355) ..+.+||.|.+..+......-....++-..|...- +.|-++-........+. ...+.......+.+++...+..+| T Consensus 184 ~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng--~~p~giL~~~g~l~~e~-~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (540) T protein:vir:41 184 PICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNY--TIPSYVITVTGEFEDEM-ELGSDGEPTGRTVLQGLIEDNFKYL 260 (540) T ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCcccCchh-ccchHHHHHHHHHHHHHHHHHhccc Confidence 67788999999999998888888888888887643 34433222211111110 000111112223333333222111 Q ss_pred ---CceeEEc------cCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHH-HHHHHHH Q lcl|Aclame:pro 145 ---EAAGGYI------PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTF-ASFFTGS 213 (355) Q Consensus 145 ---~~~~~v~------p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh-~~v~~~~ 213 (355) ....+++ +.|++++-++.+.....|.+..++...+|++++..+---++ .+++++++|-.+-+ ....... T Consensus 261 ~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~t 340 (540) T protein:vir:41 261 KEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESV 340 (540) T ss_pred cccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHH Confidence 1223444 35677777766666667899999999999999888743332 12222334433333 3455677 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHh-CCCCCC Q lcl|Aclame:pro 214 LNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARY-GLPAPA 292 (355) Q Consensus 214 ~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~-glp~~~ 292 (355) +.-.++.|+..||+.|++.+ + .. -+|+|+...-.....++.++++++.|++.+ +++|+.+ |++. . T Consensus 341 L~P~~~~ie~~ln~~L~~~~-----~-~~--~~i~f~~~~ll~~D~~~~~~~lv~~G~lT~-----NE~Re~L~g~e~-g 406 (540) T protein:vir:41 341 VRPQQEIVSSVLTDFIQLKL-----D-PG--ARFVFNEEILMESEFVHNYALLVQCGVLTP-----SEVREKLFGLDG-G 406 (540) T ss_pred HHHHHHHHHHHHHHhhhhcc-----C-Cc--eEEEecchhhcchHHHHHHHHHHhCCCCCH-----HHHHHHhCcCcC-C Confidence 89999999999998775532 1 11 256676543333456677888999998653 6788754 6643 2 Q ss_pred CccccccccccccC-----Ccccccccc--ccccccCCcccCcc------ccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 293 ERDDGADAAAAKAA-----GRRRAKRLP--GQRQGAALPSRSPR------ADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 293 ~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) + +....+..-... .....+..+ .........+.... ..+...+.. +...+.....+.+-| T Consensus 407 d-d~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 479 (540) T protein:vir:41 407 P-DMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDKKKKI--DEVLSDFRAEAYENG 479 (540) T ss_pred C-cccccccccccccccccccccCCCCccccccccchhcccccCccccccccccccccc--cccccccCCccccch Confidence 1 211111100000 000000000 00000000000000 000000000 000000000011111 No 80 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=99.32 E-value=2.4e-11 Score=78.80 Aligned_cols=326 Identities=14% Similarity=0.067 Sum_probs=155.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeee-----------------e-------ecCCCceEEEeec--CCCCCCceeeC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRF-----------------D-------VAPDGGLVAIEQW--GVFGKATVRIP 54 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f-----------------~-------~~~~g~l~~~~q~--~~~g~~~~~ip 54 (355) +.|+++...+ .+..|.+.|+.++... . .+..+.+...... ...+...+.+| T Consensus 89 ~i~~~r~~~G---~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (467) T protein:vir:31 89 TIEILTQTDG---TPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGTSVSNP 165 (467) T ss_pred EEEEEECCCC---cEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccceeEec Confidence 6677775433 3556777777655321 0 1111111111111 11122345688 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecC-CCCccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAP-LPEAIARDTARAEQWLNDQKEE 133 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~-~~~~~~~d~~~~e~~~~~~~~~ 133 (355) ...+|+++.....+..||.|.+..+......-.....+-..|... | +.|-++... +... +++..+ . T Consensus 166 ~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~n-g-~~p~gil~~~~~~l---~~e~~~--------~ 232 (467) T protein:vir:31 166 ANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFEN-D-GVPRIAIIVKGAEL---TEKGRE--------E 232 (467) T ss_pred cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc-c-CCCceEEEecCcCC---CHHHHH--------H Confidence 889998886666678899999998888765555555555555543 2 444333221 1111 222112 2 Q ss_pred HHHHHHHHhc--------------CCceeEEccCCceEEEec-----cC---CCcccHHHHHHHHHHHHHHHHhhhhhcc Q lcl|Aclame:pro 134 GLQLAKEFRA--------------GEAAGGYIPHGANFTLTG-----VQ---GKLPEMDGPIRYHDEQIARAVLAHFLTL 191 (355) Q Consensus 134 l~~~~~~~~~--------------G~~~~~v~p~~~~ie~~~-----~~---g~~~~~~~~i~~~d~~Isk~ilgqtlt~ 191 (355) +++.+.+... .....++++.|++...++ .+ .....|.+..++..++|++++..+--.+ T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~l 312 (467) T protein:vir:31 233 MRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIA 312 (467) T ss_pred HHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHc Confidence 2222221111 112346666665543332 22 2234578888899999999877763323 Q ss_pred ccCCccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHh Q lcl|Aclame:pro 192 GGDKSTGSYA--LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVE 268 (355) Q Consensus 192 ~~~~~~GS~A--l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~ 268 (355) +...+++++ ..+.........+.-.++.|++.||+.|++..... ...+-+|.+.... .+.++.++.+..+++ T Consensus 313 -G~~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~----~~~~i~f~~~~l~~~d~~~~~~~~~~~~~ 387 (467) T protein:vir:31 313 -GVVESGAFSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDA----PDWTIEFELAKPDTKLQDVEIASQRVQAM 387 (467) T ss_pred -ccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcc----CCceEEEecchhhccCHHHHHHHHHHHHh Confidence 222233432 12223344456678889999999999887653221 1122345444443 367888999999999 Q ss_pred CCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhH-hhhchH Q lcl|Aclame:pro 269 CGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRR-RPRHPA 347 (355) Q Consensus 269 ~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 347 (355) .|++. .+++|+.+|+|+-. +++............. ...+................+........+ ..+... T Consensus 388 ~G~~T-----~NE~R~~~Gl~pi~-d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (467) T protein:vir:31 388 QGLLT-----VNELRDEFGFEPFP-EEHVYGGETLVAEVTG--GSGPGGGIGDQIEQLVEDRADEIIDSYQADLETEQLI 459 (467) T ss_pred CCCcC-----HHHHHHHhCCCCCC-cccccCCccccccccc--ccCCCCcccCcCCCCCCCcccchHhhhhhccccchhh Confidence 99865 47899999997542 2222111111000000 000111000000000000000011111111 111111 Q ss_pred HhhhcCCC Q lcl|Aclame:pro 348 HRRCAPDG 355 (355) Q Consensus 348 ~~~~~~~~ 355 (355) ..-+..|- T Consensus 460 ~~~~~~~~ 467 (467) T protein:vir:31 460 EIGANADS 467 (467) T ss_pred hhccccCC Confidence 11111111 No 81 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=99.30 E-value=4.8e-11 Score=77.18 Aligned_cols=333 Identities=12% Similarity=0.056 Sum_probs=157.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceE--------EEeec-------CCCCCCceeeCCccEEEEecCC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLV--------AIEQW-------GVFGKATVRIPVDRLVVFVNER 65 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~--------~~~q~-------~~~g~~~~~ip~~k~i~~~~~~ 65 (355) +.|+++... | .+..|.+.|+.++. ...+.++-.. +...+ ...|.....+|...+|++++.. T Consensus 110 yi~i~rd~~-G--~~~~L~~l~~~~v~-v~~d~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~ 185 (542) T protein:vir:41 110 TLEVVRDDR-G--DPIRFEYIPSHTIR-VHKDGSRYRQTWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPS 185 (542) T ss_pred EEEEEEcCC-C--cEEEEEEEcCcceE-EEEcCCeeEeeecCCcceeEEeecccccccccccccccccCcccEEEecCCC Confidence 677777543 3 36778888888774 3333221111 11111 0122233457777888887777 Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE--EeecCCCCcc-ccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 66 EGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPI--YQGAPLPEAI-ARDTARAEQWLNDQKEEGLQLAKEFR 142 (355) Q Consensus 66 ~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~--~~~~~~~~~~-~~d~~~~e~~~~~~~~~l~~~~~~~~ 142 (355) ..+.+||.|.+..+......-....++-..|...- ++|- +..+...... ..+.....++.....+...+...... T Consensus 186 ~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng--~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~ 263 (542) T protein:vir:41 186 PVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNY--TIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLK 263 (542) T ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhh Confidence 67889999999999988877777777777777643 3443 3322211111 11111111122222222222222221 Q ss_pred cCCceeEEcc------CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc-CCccchhhhHHHHH-HHHHHHH Q lcl|Aclame:pro 143 AGEAAGGYIP------HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG-DKSTGSYALGDTFA-SFFTGSL 214 (355) Q Consensus 143 ~G~~~~~v~p------~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~-~~~~GS~Al~~vh~-~v~~~~~ 214 (355) ......+|++ .|++++-++.+.....|.+..++..++|+.++..+---++. ++++.+++-.+.+. ......+ T Consensus 264 ~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL 343 (542) T protein:vir:41 264 EAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVV 343 (542) T ss_pred cccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHH Confidence 1112345553 46666666655555668888899999999998776432321 11112223334333 3456677 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHh-CCCCCCC Q lcl|Aclame:pro 215 NAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARY-GLPAPAE 293 (355) Q Consensus 215 ~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~-glp~~~~ 293 (355) .-.++.|+..||+.|++.. +. . -+|+|+...-......+.++.+++.|++.+ +++|+.+ |++. .+ T Consensus 344 ~P~~~~ie~~ln~~L~~~~-----~~-~--~~~~f~~~~ll~~d~~~~~~~~v~~GilT~-----NE~Re~L~g~~p-gd 409 (542) T protein:vir:41 344 RPQQNIISSILTDFFQVKF-----NP-K--TRFKFNDETLLESDSVRNCALLVQSGVLTP-----AEARERLFGLDG-GP 409 (542) T ss_pred HHHHHHHHHHHHhhccccc-----CC-c--eEEEecchhhcchHHHHHHHHHHhCCCCCH-----HHHHHhhCCCCC-CC Confidence 8899999999998665532 11 1 156665433222334556778899998764 6788764 7653 22 Q ss_pred ccccccccccccCC-----cccccc---cccc--ccccC-Ccc-cCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 294 RDDGADAAAAKAAG-----RRRAKR---LPGQ--RQGAA-LPS-RSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 294 ~~~~~~~~~~~~~~-----~~~~~~---~~~~--~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) + ....+......+ ...... ...+ ....+ ... ..++....+.. --...+...--.-+++-| T Consensus 410 d-~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 481 (542) T protein:vir:41 410 D-IFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKLSAEEKK-KKIDESLAEFRAEAYEAG 481 (542) T ss_pred c-cccccccccccccccCCcCCCCCchhhhhhcccccCccccccccccccchhhc-ccccchhhhhHHhHHhcC Confidence 1 111111000000 000000 0000 00000 000 00000000000 001111111222233444 No 82 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=99.26 E-value=9.7e-11 Score=75.49 Aligned_cols=284 Identities=11% Similarity=0.078 Sum_probs=154.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCC-CccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREG-ANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~-~~p~G~~ll~~~ 79 (355) +.++++ ++.-.+..|.+.+|.++. +..+.+|- . ++. .+..++++.+|++++...+ ...+|.|.+..+ T Consensus 115 ~~~~~~---~~~g~~~~l~~i~~~~v~-~~~~~~~~-~-~~~------~~~~~~~~evih~~~~~~~~~~~~G~s~i~~~ 182 (406) T protein:vir:95 115 VVFPKY---TADGLIDELVPLTPSKVN-FLDTPDGY-Q-VLY------GGQTFNYDEVLHFIYNPDPERPYIGRGYRVVL 182 (406) T ss_pred EEEEEE---CCCCcEEEEEEEcCceeE-EEEcCCeE-E-EEe------ccEEEchhHEEEeeccCCCCCCccccCHHHHH Confidence 223333 333347889999998775 44444442 1 121 1346888889988865443 446799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC-ceEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG-ANFT 158 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~-~~ie 158 (355) ......-....++...+...- +.|-++........ ++. .+..++.+.+...... ++...+|++.+ .+.+ T Consensus 183 ~~~i~~~~~~~~~~~~~~~ng--~~~~~il~~~~~l~---~e~----~~~~~~~~~~~~~g~~-n~~~~~v~~~~~~~~~ 252 (406) T protein:vir:95 183 KDIADNLKQATATKKSFMSGK--YMPSLIVKVDAATA---ELS----SEEGRNAVFKKYLQAT-EAGQPWIIPAELLEVE 252 (406) T ss_pred HHHHHHHHHHHHHHHHHHhcc--CCcceEEEeCCCCC---HHH----HHHHHHHHHHHhcccc-ccCCceeecCCCcccc Confidence 888877777788777777643 45544433322111 111 1222222322222111 11224556654 4444 Q ss_pred Ee-ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 159 LT-GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN 237 (355) Q Consensus 159 ~~-~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN 237 (355) -+ ..+.....+.+..++..++|++++..+.-.++ . ++.. .+.........+.-.++.|++.||+.|+. T Consensus 253 ~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg-~---~~~~-~~~~~~~~~~~l~P~~~~ie~~l~~~l~~------ 321 (406) T protein:vir:95 253 QVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLG-I---GEFN-RDEYNNFINSTILPIAKGIEQELTRKLLI------ 321 (406) T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcC-C---CCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ Confidence 33 22334455778889999999999888753332 1 1221 23344556666777778888888776643 Q ss_pred CCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccc----cCCccccc Q lcl|Aclame:pro 238 WGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAK----AAGRRRAK 312 (355) Q Consensus 238 f~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~----~~~~~~~~ 312 (355) +...+-+|.++... .|.++.++.+.+|++.|+..+ +++|+.+|+|+-+.++....+..-. .......+ T Consensus 322 --~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~-----NE~R~~~gl~p~~~gd~~~~~~n~~~~~~~~~~~~~k 394 (406) T protein:vir:95 322 --SPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEG-----NEVRDWLGLSPKEGLSELVILENYIPLDKIGDQSKLK 394 (406) T ss_pred --CCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCCCCcceeeeccCccchhhcccccccC Confidence 22223344443332 367889999999999998753 7899999998654444332221111 01111111 Q ss_pred cccccccccCCccc Q lcl|Aclame:pro 313 RLPGQRQGAALPSR 326 (355) Q Consensus 313 ~~~~~~~~~~~~~~ 326 (355) .+..... .++.. T Consensus 395 ~g~~~~~--~~~~~ 406 (406) T protein:vir:95 395 GGDNSGA--DGQTD 406 (406) T ss_pred CCCCCCC--CCCCC Confidence 1111111 11111 No 83 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=99.21 E-value=1.4e-10 Score=74.56 Aligned_cols=280 Identities=9% Similarity=0.024 Sum_probs=158.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEe--ecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIE--QWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~--q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.+++... .| .+..|.+.|+.+++ +..+.+|+.+.++ ..+........+++..+||+++....+.++|.|.+.. T Consensus 101 ~~~i~rd~-~G--~~~~l~~i~~~~v~-v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~ 176 (382) T protein:vir:48 101 FAYRWRNE-NG--RDMKWEYLRPSQVS-FNRLDNKDGIYYNITFDDPRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMA 176 (382) T ss_pred EEEEEECC-CC--cEEEEEEEcCceeE-EEEcCCCCeEEEEEEecCccccceeEEcCccEEEecCCCCCCccccccHHHH Confidence 55555432 23 36689899988775 3445555433322 2222222345688899998887777788999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) +....-.-....++...+...- +.|-++.++..... ++ ..+...+.. .+...+....+|++.|++++ T Consensus 177 ~~~~i~~~~~~~~~~~~~~~ng--~~p~~il~~~~~~~---~e----~~~~~~~~~----~~~~~n~g~~~vl~~g~~~~ 243 (382) T protein:vir:48 177 LSRELDIQKASGNLTINSLKNA--LNANGILKIKGGGL---LD----FKTKLSRSR----QAMKQMQGGPLVLDDLEDFT 243 (382) T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCC---hH----HHHHHHHHH----HhhccCCCCeeEcCCCceEE Confidence 9988877777777777777653 44544444322211 11 111122222 22333445578999999998 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf 238 (355) -++.+.....|.+..++..++|++++..+....+.. +.++ +..+.........+.-.++.|++.||+.|.+.+- .+ T Consensus 244 ~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~-~~~~-~~~~~~~~~~~~~l~p~~~~i~~~l~~~l~~~~~-~~- 319 (382) T protein:vir:48 244 PLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQ-GDQQ-SSLEMSSDLYSKAVSRYLRPFLSELSQKLSCDVD-AD- 319 (382) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC-CCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-hh- Confidence 887666666788889999999999988875544322 2222 2334445566667777888899999887765431 11 Q ss_pred CCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccc Q lcl|Aclame:pro 239 GPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQR 318 (355) Q Consensus 239 ~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (355) ..+.+ ..+...+...+.+|...|+.. .+.+|+.++-..-...+...... .. ++ . T Consensus 320 ----~~~~~-----~~~~~~~~~~~~~l~~~g~~t-----~~e~r~~l~~~g~~~~~~~~~~~--~~------~~----~ 373 (382) T protein:vir:48 320 ----IFPAV-----DPTGSNYISRINSLVKTGTLA-----QNQGLYILQQAEILPKELPNGEN--PN------ST----L 373 (382) T ss_pred ----hhhhh-----ccchhHHHHHHHHHhhcCccC-----HHHHHHHHhhCCCCCcchhhhhc--CC------CC----C Confidence 11111 123344556677888888765 46778876421101100000000 00 00 0 Q ss_pred cccCCcccC Q lcl|Aclame:pro 319 QGAALPSRS 327 (355) Q Consensus 319 ~~~~~~~~~ 327 (355) .+++.+... T Consensus 374 ~GGd~~~~~ 382 (382) T protein:vir:48 374 KGGEEDGQD 382 (382) T ss_pred CCCCCCCCC Confidence 111111111 No 84 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=99.20 E-value=1.4e-10 Score=74.66 Aligned_cols=283 Identities=10% Similarity=-0.032 Sum_probs=137.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCC-CceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGK-ATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~-~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) .+ +|...++.+.+..+..... ..... . +.+....+. ....+|+..++|+++....+.+++.++...+ T Consensus 103 ay--~~~~~~~~~~~~~~~~~~~--------~~~~~-~-~~~v~~~~~~~~~~~~~~evih~r~~~~~~~~~~~~l~~~~ 170 (395) T protein:vir:40 103 AL--IFMQDEYIYVADSFTKNDK--------SLYEN-T-YTEVTLKDLTLKKEFKESEVLHLTLNNESIKSIIDGFYLLY 170 (395) T ss_pred eE--EEEecCceeecCCcccccc--------ccccc-e-eeeeeecCceeeeeeccccEEEeecCCCCccccchhHHHHH Confidence 22 1112222222222211110 00000 0 011001111 1235788889998887777888888776544 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) ... +... ...+. +.+.+-+.++.+.....+ + ++.+..++.+.+.......++...++++.|++++- T Consensus 171 ~~~--~~~~----~~~~~-~~~~~~~~l~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~ 236 (395) T protein:vir:40 171 GDL--LTAA----VNKYK-KLNSRKIIVKLKAMFGQT---P----EAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDE 236 (395) T ss_pred HHH--HHHH----HHHHH-hcCCCCceEEEecccCCC---H----HHHHHHHHHHHHHHHHhhccCCceeecCCCceEEe Confidence 322 1111 11122 223334555544332211 1 11222333344444443334455788999999998 Q ss_pred eccCCCcccHHHHH---HHHHHHHHHHHhhhhhccccCCccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 TGVQGKLPEMDGPI---RYHDEQIARAVLAHFLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 160 ~~~~g~~~~~~~~i---~~~d~~Isk~ilgqtlt~~~~~~~GS~Al-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) ++.+.....|.++- +.+-++|++++..+.-... |+++- .+.........+.-.++.|++.||+.|++.--. T Consensus 237 l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~-----~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~kLl~~~~~ 311 (395) T protein:vir:40 237 LAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK-----GDTVGLSEQVNSFLMFSINPIAEMFTDEGNRKFYGRDSV 311 (395) T ss_pred ccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc-----CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh Confidence 87766555565543 4445799999887643332 33332 233344445577778888888888877664211 Q ss_pred hCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC--ccccccccc-ccc-CCccc Q lcl|Aclame:pro 236 QNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE--RDDGADAAA-AKA-AGRRR 310 (355) Q Consensus 236 lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~--~~~~~~~~~-~~~-~~~~~ 310 (355) . ...+-+|.++..- .|.++.++.+.++++.|+.. .+++|+.+|+|+-+. ++....+.. ... ..... T Consensus 312 ~----~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~ 382 (395) T protein:vir:40 312 L----ERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNT-----IDDNLRMIGREPVMSPETQERFVTKNYAPLGENEED 382 (395) T ss_pred c----CCceEEEechhhhccCHHHHHHHHHHHHhCCCCC-----HHHHHHHhCCCCCCCCCCceeeeccccccccccccc Confidence 1 1122234433332 36789999999999999765 478999999985432 222211111 111 01111 Q ss_pred cccccccccccCCcc Q lcl|Aclame:pro 311 AKRLPGQRQGAALPS 325 (355) Q Consensus 311 ~~~~~~~~~~~~~~~ 325 (355) .+.++.... .+++ T Consensus 383 ~kgge~~~~--~~~~ 395 (395) T protein:vir:40 383 LKGGDINEN--KGDS 395 (395) T ss_pred cCCCCCCCC--cCCC Confidence 111111111 1111 No 85 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=99.19 E-value=9.4e-11 Score=75.56 Aligned_cols=291 Identities=8% Similarity=-0.002 Sum_probs=146.2 Q ss_pred Ce-EEEEe--eeC-CEEEEe-eeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchh Q lcl|Aclame:pro 1 MF-EQVYR--IEN-GRARLG-KLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSL 75 (355) Q Consensus 1 V~-Eivw~--~~~-g~~~~~-~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~l 75 (355) +. .+++. ..+ +++.+. +...++. .+ ....++++...+ + ..+..+|.+.+|++++.. .+..+|.|. T Consensus 94 f~~~~~~~lll~Gn~~~~i~~~~~~~~~-~~-~~~~~~~~~~~~-~------~~~~~~~~~eiih~r~~~-~d~~~G~s~ 163 (394) T protein:vir:62 94 FIKLMTNTYLLEGETFPILNGAQIHLAS-NV-FTELDDNLVEHF-N------IGGHEIPPCMIRHVKNIG-ADHLRGKGI 163 (394) T ss_pred HHHHHHHHHHhcCCeEEEEecceeeccc-cc-eEEECCceEEEE-e------eCCEEechhheEEecCcC-CCCccccCh Confidence 00 00010 000 111111 0111111 11 123344433221 1 123568888888877654 345789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCc Q lcl|Aclame:pro 76 LRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGA 155 (355) Q Consensus 76 l~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~ 155 (355) +..+....-.-....++...+...- +.|-++......... +. ++....++.+.+...... .....+|++.|. T Consensus 164 ~~~~~~~i~~~~~~~~~~~~~~~ng--~~~~~il~~~~~~~~-~~----~~~~~~~~~~~~~~~g~~-n~g~~~vl~~g~ 235 (394) T protein:vir:62 164 LDLGRDTLEGVMSAEKTLTDKYKKG--GLLTFLLNLDAHINP-QN----GAQSKLINAILDQLESID-EARSVKMIPLGK 235 (394) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--CCcceEEEeCCCCCc-CH----HHHHHHHHHHHHHhcccc-ccCceeEeeCCC Confidence 9999988777777777777777653 455433333221111 11 111112222222222110 112346888888 Q ss_pred eEEEeccCCCc--ccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 NFTLTGVQGKL--PEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVED 232 (355) Q Consensus 156 ~ie~~~~~g~~--~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~ 232 (355) ++++...+.+. ..+.+..++..++|++++..+....+. ++++- .+.........+.-.++.|+..||+.|+.. T Consensus 236 ~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kll~~ 311 (394) T protein:vir:62 236 GYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTE----LIKEDIEKAMMYIHNKAVRPIMKNFEDHLSLLFYAQ 311 (394) T ss_pred ceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCC----CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc Confidence 88776544433 347777788999999999887644421 22222 223344456677888888888888766543 Q ss_pred HHHhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCC-CccccccccccccCCccc Q lcl|Aclame:pro 233 LVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPA-ERDDGADAAAAKAAGRRR 310 (355) Q Consensus 233 l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~-~~~~~~~~~~~~~~~~~~ 310 (355) - ....-+|.|+...- +....++.+.++++.|+.. .+++|+.+|+|+-. ++.+...... ...+... T Consensus 312 ~-------~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~g~~T-----~NE~R~~~gl~p~~~~~gd~~~~~~-n~~~~~~ 378 (394) T protein:vir:62 312 N-------SGKRIKFKINILDFVTYSNKTNIGYNLVRTAITS-----PDNVADMLGFPKQNTKESQAIYISN-DVTEIGK 378 (394) T ss_pred c-------ccCceEEEechhhhcCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCCeeeccc-ccccccc Confidence 1 11123566664432 3456788899999999765 47899999998642 2222222111 1111111 Q ss_pred cccccccccccCCccc Q lcl|Aclame:pro 311 AKRLPGQRQGAALPSR 326 (355) Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (355) .........+++.+.. T Consensus 379 ~~~~~~~~kgge~~en 394 (394) T protein:vir:62 379 KEATDGSLGGGEENEN 394 (394) T ss_pred cccccccCCCCCCCCC Confidence 1111111122222111 No 86 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=99.19 E-value=5.4e-10 Score=71.38 Aligned_cols=284 Identities=12% Similarity=0.094 Sum_probs=147.1 Q ss_pred CeEEE-Ee--eeC-CEEE--EeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCC----CCCcc Q lcl|Aclame:pro 1 MFEQV-YR--IEN-GRAR--LGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNER----EGANW 70 (355) Q Consensus 1 V~Eiv-w~--~~~-g~~~--~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~----~~~~p 70 (355) +.|.+ +. ..+ +++. -..|.+.|+..+. +..+.++.+...... .+..+++..+++++... ..+.+ T Consensus 98 f~~~~~~~~ll~Gnayi~~~~~~l~~l~~~~~~-v~~~~~~~~~~~~~~-----~~~~~~~~eiih~~~~~~~~~~~~~~ 171 (403) T protein:vir:10 98 FRRLVVTDLLFEGCAYIYWDGTSLYHVPAALMQ-VEADANKFIKKFIFN-----NQINYRVDEIIFIKDNSYVCGTNSQI 171 (403) T ss_pred HHHHHHHHHhhcCCeEEEEeCceeEeecCcceE-EEEcCCceEEEEEec-----CceeecccceEEecccccccCCCCCc Confidence 00000 00 000 1111 1234455555443 334443333222221 12346667777766332 34678 Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---Cce Q lcl|Aclame:pro 71 LGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EAA 147 (355) Q Consensus 71 ~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~~ 147 (355) +|.|.+..+....-.-....++-..|... | +.|-++.++.... +++ ..+.+++...+..+| +.. T Consensus 172 ~G~s~i~~~~~~i~~~~~~~~~~~~~f~n-g-~~~~gil~~~~~l---~~e--------~~~~~~~~~~~~~~g~~n~g~ 238 (403) T protein:vir:10 172 SGQSRVATVIDSLEKRSKMLNFKEKFLDN-G-TVIGLILETDEIL---NKK--------LRERKQEELQLDYNPSTGQSS 238 (403) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhc-c-CCcceEEEeCCCC---CHH--------HHHHHHHHHHHHhCCcccCcc Confidence 99999999888877766666666666653 3 4454333332211 111 122333333333333 233 Q ss_pred eEEccCCceEEEeccCCC--cccHHHHHHHHHHHHHHHHhhhhhccccCCccchhh-hHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 GGYIPHGANFTLTGVQGK--LPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYA-LGDTFASFFTGSLNAVMKHIADV 224 (355) Q Consensus 148 ~~v~p~~~~ie~~~~~g~--~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~A-l~~vh~~v~~~~~~ad~~~i~~~ 224 (355) .++++.|++++.++...+ ...|.+..++..++|++++..+....+ . |.++ ..+.........+.-.++.|++. T Consensus 239 ~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~---~~~sn~e~~~~~f~~~tl~P~~~~ie~~ 314 (403) T protein:vir:10 239 VLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLD-G---GNNANIRPNIELFYYMTIIPMLNKLTSS 314 (403) T ss_pred eeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcC-C---CCCcCHHHHHHHHHHHHHHHHHHHHHHH Confidence 688999999988864433 234778888999999998887754442 2 2222 22333445566677778888888 Q ss_pred HHHHHHHHHHHhCCCCcccccEEEecC-----CCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC-ccccc Q lcl|Aclame:pro 225 TQQHVVEDLVDQNWGPEEPAPRLVPAQ-----LGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE-RDDGA 298 (355) Q Consensus 225 ln~~li~~l~~lNf~~~~~~P~~~~~~-----~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~-~~~~~ 298 (355) ||+.|. ++|.|+. ...|.++.+++++++++.|++. .+++|+.+|+|+-.+ .-+.. T Consensus 315 l~~~L~--------------~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT-----~NE~R~~~gl~pi~~~~~d~~ 375 (403) T protein:vir:10 315 LTFFFG--------------YKITPNTKEVAALTPDKEAEAKHLTSLVNNGIIT-----GNEARSELNLEPLDDEQMNKI 375 (403) T ss_pred HHHhcC--------------ceeeeccchhhhcccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCccccccc Confidence 887551 1333332 2346788899999999999875 479999999985322 21211 Q ss_pred cccccccCCccccccccccccccCCcccCc Q lcl|Aclame:pro 299 DAAAAKAAGRRRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355) -.+........+...+++..+.+.. ... T Consensus 376 ~~p~n~~~~~~~~~~~e~~~~~~~~--~g~ 403 (403) T protein:vir:10 376 RIPANVAGSATGVSGQEGGRPKGST--EGD 403 (403) T ss_pred ccccccccccccCCCCcCCCCCCCc--CCC Confidence 1111111111112222222111110 000 No 87 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=99.18 E-value=2.8e-10 Score=72.97 Aligned_cols=288 Identities=13% Similarity=0.059 Sum_probs=142.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) -+-++....++.+.+. ...+.+. .. .+.....+.-. .......+|+..+|++++....+..||.|++..+. T Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~~---~~---~~~~~~~~~~~--~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~ 166 (395) T protein:vir:10 96 EVLIVVSDSKELLIAD-SFYREEY---AL---YDDIFKDVTVK--DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYG 166 (395) T ss_pred ceEEEEecCCCeEecC-CccceeE---ee---cCcceeEEEEc--CceeeeeeccccEEEEccCCCCcccccchHHHHHH Confidence 1112222233333322 1111111 11 11111111111 11123468889999888877788899999988776 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ... .....+..+ +...+.++...... .+.+ ..+...+.+.+......++..+.++++.|++++-+ T Consensus 167 ~~~-------~~~~~~~~~-~~~~~gii~~~~~~---~~~e----~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l 231 (395) T protein:vir:10 167 KIF-------GRMIGAQLK-NYQIRGILKSASSA---YDEK----NIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEEL 231 (395) T ss_pred HHH-------HHHHHHHHh-cCCCceEEEeCCCC---CCHH----HHHHHHHHHHHHhccccccCcceEEcCCCceeeec Confidence 443 222223333 33444433222211 1111 11111222222222222334445567899999888 Q ss_pred ccCCCcc-----cHHHHHHHHHHHHHHHHhhhhhccccCCccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 GVQGKLP-----EMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYA-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 161 ~~~g~~~-----~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +.+.... .|.+..++..++|++++..+.-... |+++ ..+.........+.-.+..|+..||+.|++.-- T Consensus 232 ~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~-----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~ 306 (395) T protein:vir:10 232 SNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY-----GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSM 306 (395) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc-----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh Confidence 6554332 3666667888999999888653332 2233 344455556667888889999999988765421 Q ss_pred HhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc--ccccccccccc---CCc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER--DDGADAAAAKA---AGR 308 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~--~~~~~~~~~~~---~~~ 308 (355) . ..+-+|.+.... .|.++.++++.++++.|+.. .+++|+.+|+|+-.++ +....+..-.. +.. T Consensus 307 ~------~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt-----~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~ 375 (395) T protein:vir:10 307 Y------LKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFT-----RNEVRIMLGEEPSDNPELDEYLITKNYEKANSGEN 375 (395) T ss_pred h------cccceecchhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeecccccccccccc Confidence 1 111245554333 46788999999999999875 4789999999864433 22221111110 000 Q ss_pred cccccccccccccCCcccCc Q lcl|Aclame:pro 309 RRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ 328 (355) ...........+++.+.... T Consensus 376 ~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 376 DEKEKDENTLKGGDEDESGD 395 (395) T ss_pred ccCcccccccCCCCCCCCCC Confidence 00001111111111111111 No 88 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=99.18 E-value=2.8e-10 Score=72.97 Aligned_cols=288 Identities=13% Similarity=0.059 Sum_probs=142.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) -+-++....++.+.+. ...+.+. .. .+.....+.-. .......+|+..+|++++....+..||.|++..+. T Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~~---~~---~~~~~~~~~~~--~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~ 166 (395) T protein:vir:95 96 EVLIVVSDSKELLIAD-SFYREEY---AL---YDDIFKDVTVK--DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYG 166 (395) T ss_pred ceEEEEecCCCeEecC-CccceeE---ee---cCcceeEEEEc--CceeeeeeccccEEEEccCCCCcccccchHHHHHH Confidence 1112222233333322 1111111 11 11111111111 11123468889999888877788899999988776 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ... .....+..+ +...+.++...... .+.+ ..+...+.+.+......++..+.++++.|++++-+ T Consensus 167 ~~~-------~~~~~~~~~-~~~~~gii~~~~~~---~~~e----~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l 231 (395) T protein:vir:95 167 KIF-------GRMIGAQLK-NYQIRGILKSASSA---YDEK----NIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEEL 231 (395) T ss_pred HHH-------HHHHHHHHh-cCCCceEEEeCCCC---CCHH----HHHHHHHHHHHHhccccccCcceEEcCCCceeeec Confidence 443 222223333 33444433222211 1111 11111222222222222334445567899999888 Q ss_pred ccCCCcc-----cHHHHHHHHHHHHHHHHhhhhhccccCCccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 GVQGKLP-----EMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYA-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 161 ~~~g~~~-----~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +.+.... .|.+..++..++|++++..+.-... |+++ ..+.........+.-.+..|+..||+.|++.-- T Consensus 232 ~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~-----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~ 306 (395) T protein:vir:95 232 SNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY-----GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSM 306 (395) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc-----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh Confidence 6554332 3666667888999999888653332 2233 344455556667888889999999988765421 Q ss_pred HhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc--ccccccccccc---CCc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER--DDGADAAAAKA---AGR 308 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~--~~~~~~~~~~~---~~~ 308 (355) . ..+-+|.+.... .|.++.++++.++++.|+.. .+++|+.+|+|+-.++ +....+..-.. +.. T Consensus 307 ~------~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt-----~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~ 375 (395) T protein:vir:95 307 Y------LKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFT-----RNEVRIMLGEEPSDNPELDEYLITKNYEKANSGEN 375 (395) T ss_pred h------cccceecchhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeecccccccccccc Confidence 1 111245554333 46788999999999999875 4789999999864433 22221111110 000 Q ss_pred cccccccccccccCCcccCc Q lcl|Aclame:pro 309 RRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ 328 (355) ...........+++.+.... T Consensus 376 ~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 376 DEKEKDENTLKGGDEDESGD 395 (395) T ss_pred ccCcccccccCCCCCCCCCC Confidence 00001111111111111111 No 89 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=99.18 E-value=2.8e-10 Score=72.97 Aligned_cols=288 Identities=13% Similarity=0.059 Sum_probs=142.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) -+-++....++.+.+. ...+.+. .. .+.....+.-. .......+|+..+|++++....+..||.|++..+. T Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~~---~~---~~~~~~~~~~~--~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~ 166 (395) T protein:vir:10 96 EVLIVVSDSKELLIAD-SFYREEY---AL---YDDIFKDVTVK--DYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYG 166 (395) T ss_pred ceEEEEecCCCeEecC-CccceeE---ee---cCcceeEEEEc--CceeeeeeccccEEEEccCCCCcccccchHHHHHH Confidence 1112222233333322 1111111 11 11111111111 11123468889999888877788899999988776 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ... .....+..+ +...+.++...... .+.+ ..+...+.+.+......++..+.++++.|++++-+ T Consensus 167 ~~~-------~~~~~~~~~-~~~~~gii~~~~~~---~~~e----~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l 231 (395) T protein:vir:10 167 KIF-------GRMIGAQLK-NYQIRGILKSASSA---YDEK----NIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEEL 231 (395) T ss_pred HHH-------HHHHHHHHh-cCCCceEEEeCCCC---CCHH----HHHHHHHHHHHHhccccccCcceEEcCCCceeeec Confidence 443 222223333 33444433222211 1111 11111222222222222334445567899999888 Q ss_pred ccCCCcc-----cHHHHHHHHHHHHHHHHhhhhhccccCCccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 GVQGKLP-----EMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYA-LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 161 ~~~g~~~-----~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~A-l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) +.+.... .|.+..++..++|++++..+.-... |+++ ..+.........+.-.+..|+..||+.|++.-- T Consensus 232 ~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~-----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~ 306 (395) T protein:vir:10 232 SNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY-----GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSM 306 (395) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc-----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh Confidence 6554332 3666667888999999888653332 2233 344455556667888889999999988765421 Q ss_pred HhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc--ccccccccccc---CCc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER--DDGADAAAAKA---AGR 308 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~--~~~~~~~~~~~---~~~ 308 (355) . ..+-+|.+.... .|.++.++++.++++.|+.. .+++|+.+|+|+-.++ +....+..-.. +.. T Consensus 307 ~------~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt-----~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~ 375 (395) T protein:vir:10 307 Y------LKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFT-----RNEVRIMLGEEPSDNPELDEYLITKNYEKANSGEN 375 (395) T ss_pred h------cccceecchhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeecccccccccccc Confidence 1 111245554333 46788999999999999875 4789999999864433 22221111110 000 Q ss_pred cccccccccccccCCcccCc Q lcl|Aclame:pro 309 RRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ 328 (355) ...........+++.+.... T Consensus 376 ~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 376 DEKEKDENTLKGGDEDESGD 395 (395) T ss_pred ccCcccccccCCCCCCCCCC Confidence 00001111111111111111 No 90 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=99.18 E-value=1.3e-10 Score=74.83 Aligned_cols=282 Identities=10% Similarity=0.041 Sum_probs=147.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCc-cccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGAN-WLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~-p~G~~ll~~~ 79 (355) +.+++| ++.-.+..|.+.+|.++. +..+.+|..+... +..++...+|+++....+.+ .+|.|.+..+ T Consensus 112 ~i~~~~---~~~g~~~~L~~l~p~~v~-~~~~~~g~~~~y~--------~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~ 179 (403) T protein:vir:80 112 VVFPKY---TTSGLIDELIPLAPSKVS-FVDTDTGYQIWYQ--------GKAYNYDEVLHFIVNPDPEKPYMGRGYRVVL 179 (403) T ss_pred EEEEEE---cCCCcEEEEEEEcCCeeE-EEEcCCceEEEEe--------ecccchhhEEEEeccCCCcCccccccHHHHH Confidence 344444 332347788888888775 4455555332221 12467778888775544444 4599998888 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCc-eEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGA-NFT 158 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~-~ie 158 (355) ....-.-....++...|...- +.|-++........ .+..++. ++.+.+...... .+...+++|.+. +.+ T Consensus 180 ~~~i~~~~~~~~~~~~~~~ng--~~p~~il~~~~~~~---~~~~~~~----~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 249 (403) T protein:vir:80 180 KDIVNNLKQATTTKKSFMSGK--YMPSLIVKVDAATA---ELSSEEG----RNAVFKKYLEAS-EAGQPWIIPAELLDVE 249 (403) T ss_pred HHHHHHHHHHHHHHHHHHhcc--CCcceEEEeCCCCC---hHHHHHH----HHHHHHHHhhhh-hcCCeeeecccccccc Confidence 777766666666666777532 44544333322111 1111221 112221111111 112345666553 222 Q ss_pred -EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 159 -LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN 237 (355) Q Consensus 159 -~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN 237 (355) +...+.....+.+..++...+|++++..+.-..+ .+. ++.+ .........+.-.++.|++.||+.|+. T Consensus 250 ~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~-~~~~---~~~~f~~~~l~P~~~~ie~~l~~kll~------ 318 (403) T protein:vir:80 250 QVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLG-VGK-YDKD---EYNNFINSTILPIAKGIEQELTRKLLI------ 318 (403) T ss_pred eeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcC-CCC-ccHH---HHHHHHHHHHHHHHHHHHHHHHHhccC------ Confidence 2222223334677788899999999888743232 111 1111 223455566777788888888876642 Q ss_pred CCCcccccEEEecCC---CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccc----cCCccc Q lcl|Aclame:pro 238 WGPEEPAPRLVPAQL---GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAK----AAGRRR 310 (355) Q Consensus 238 f~~~~~~P~~~~~~~---~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~----~~~~~~ 310 (355) ..+. .|+|+.. ..|.++.++.+.++++.|+.. .+++|+.+|+|+-+.+++......-. ...... T Consensus 319 --~~~~--~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t-----~NE~R~~~gl~p~~ggd~~~~~~n~~pl~~~~~~~~ 389 (403) T protein:vir:80 319 --SPDL--YFKFNPRSLYAYDLKELAEVGSNMYVRGLME-----GNEVRDWLGLSPKEGLSELVILENYIPLDKIGDQNK 389 (403) T ss_pred --CCCc--EEEeechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeEeecccccchhhccchhh Confidence 2222 4556432 246788999999999999875 47899999998644444322211100 011111 Q ss_pred cccccccccccCCcccCcccc Q lcl|Aclame:pro 311 AKRLPGQRQGAALPSRSPRAD 331 (355) Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~ 331 (355) .+.++.....+.. + T Consensus 390 ~k~ge~~~~~~~~-------~ 403 (403) T protein:vir:80 390 LKGGEKGGADGQT-------D 403 (403) T ss_pred ccCCCCCCCCCCC-------C Confidence 1222212111111 1 No 91 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=99.16 E-value=1.5e-10 Score=74.42 Aligned_cols=279 Identities=11% Similarity=0.047 Sum_probs=141.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) .+ + +...++.+.+.....++.. ..... . ......- . .+.....+|...+|++++....+..+|.|++..+. T Consensus 97 a~-i-~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~-~-~~~~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~ 167 (385) T protein:vir:95 97 VL-V-VKNDEGHFFVADDFEKEDE-LGLYS-H---RFTNVLV-N-DFEFKRVFTMDDVIYLKYNNQKLDAFSLGLFEDYG 167 (385) T ss_pred eE-E-EEecCCCeeeccccccccc-ccccc-c---cceeeee-c-ccceeeeeccccEEEecCCCCCcccccchHHHHHH Confidence 22 1 1122333333322222211 11100 0 0000000 0 11122457888888888887777889999998876 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceE-EeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPI-YQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~-~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) ...-. .... .+|+.+++. ++.+.... .+ ++..+..++.+.++......+....++++.|++++- T Consensus 168 ~~i~~-------~~~~-~~~~~~~~g~l~~~~~~~---~~----~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~ 232 (385) T protein:vir:95 168 EIFGR-------MIDL-QMLNNQIRGILKVDATKF---YN----KEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEE 232 (385) T ss_pred HHHHH-------HHHH-HHhcCCCceEEEeCCccC---CC----HHHHHHHHHHHHHHhhhhhhcCCceEEcCCCceeEe Confidence 54321 1111 233444443 33222111 11 111222223333333333233445678999999988 Q ss_pred eccCCC------cccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 TGVQGK------LPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALG-DTFASFFTGSLNAVMKHIADVTQQHVVED 232 (355) Q Consensus 160 ~~~~g~------~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~-~vh~~v~~~~~~ad~~~i~~~ln~~li~~ 232 (355) ++.... ...|.+..++...+|++++..+.-... |+++-. +.........+.-.++.|++.||+.|++. T Consensus 233 l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~-----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~~ 307 (385) T protein:vir:95 233 HSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL-----GEMADLEKTIESYLQFCINPLLRKIEAELNSKFFYQ 307 (385) T ss_pred ecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc-----CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh Confidence 865432 134788889999999999988643232 334433 33445555677888899999999888765 Q ss_pred HHHhCCCCcccccEEEecCC-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCC-CCccccccccccccCCccc Q lcl|Aclame:pro 233 LVDQNWGPEEPAPRLVPAQL-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAP-AERDDGADAAAAKAAGRRR 310 (355) Q Consensus 233 l~~lNf~~~~~~P~~~~~~~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~-~~~~~~~~~~~~~~~~~~~ 310 (355) --..+ .+.+|.++.. ..|.++.+++++++++.|+.. .+++|+.+|+|+- .++.+..-.. ....+... T Consensus 308 ~~~~~-----~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt-----~NE~R~~~g~~p~~~~~gd~~~~~-~n~~~~~~ 376 (385) T protein:vir:95 308 DEYLN-----DDMHIKVVGIDKRDPLKLSEAIDKLVASGTFT-----RNQVRIMTGEEPADDPELDKFIIT-KNLQSADA 376 (385) T ss_pred hhccc-----ceEEEechhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeec-ccceeccc Confidence 32111 1223333333 246788999999999999875 4789999999753 2222222111 11100000 Q ss_pred cccccccccccCCccc Q lcl|Aclame:pro 311 AKRLPGQRQGAALPSR 326 (355) Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (355) . .+++.+.+ T Consensus 377 ~-------kgge~~~e 385 (385) T protein:vir:95 377 F-------KGGESNEE 385 (385) T ss_pred c-------cCCCCCCC Confidence 1 11111111 No 92 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.09 E-value=1e-09 Score=69.82 Aligned_cols=310 Identities=12% Similarity=0.064 Sum_probs=155.5 Q ss_pred CeEEEEeeeCC--------EEEEeeeeecCccceee--ee-ecC----CCceEEEeecCCCCCCceeeCCccEEEEecC- Q lcl|Aclame:pro 1 MFEQVYRIENG--------RARLGKLAWRPPRTISR--FD-VAP----DGGLVAIEQWGVFGKATVRIPVDRLVVFVNE- 64 (355) Q Consensus 1 V~Eivw~~~~g--------~~~~~~l~~r~~~~i~~--f~-~~~----~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~- 64 (355) ..=++-..++. .=.++.|...++..+.- .. .|. .|+...++-. .+.....+.+.++|++... T Consensus 102 ~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg~p~~y~v~--~~~~~~~iH~SRii~~~~~~ 179 (437) T protein:vir:52 102 SVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFGRYSEYSIL--GGSQSITVHHSRLIILNAND 179 (437) T ss_pred ceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccccCcceEEEEe--cCCcceeEccceeEEecCcc Confidence 10011111110 01233455555443320 00 011 1333333322 2333457888888888532 Q ss_pred --CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 65 --REGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFR 142 (355) Q Consensus 65 --~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~ 142 (355) ....+.+|.|+|.++|....--.....--...+.++ .+++.+.+--... ... ..++. .....+++..++ T Consensus 180 ~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~--~~~v~k~~~l~~~--l~~-~~~~~----~~~~~~~~~~~~ 250 (437) T protein:vir:52 180 APLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFES--KIDIFKIAGLSDK--IAA-GMENE----VASVISAVQEIK 250 (437) T ss_pred CCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHc--CCCceecchHHHH--hcC-CcHHH----HHHHHHHHHHhc Confidence 245778899999999998866666666666777776 4566554311111 111 11111 222333444444 Q ss_pred cCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 AGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIA 222 (355) Q Consensus 143 ~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~ 222 (355) + +...++++.+.+++.++.+ ..+...+++..-.+|+.+.--+..-+-+.+ .+..|-|+-....+-+.+++...... T Consensus 251 ~-~~~~~~~d~~~~~e~~~~~--~sgl~~~l~~~~~~iaaa~~iP~t~L~G~s-~~Glasge~D~~~yyd~i~~~Qe~~l 326 (437) T protein:vir:52 251 S-ATNSLLLDAENEYDRKELT--FTGLKDLLTEFRNAVAGAADMPVTILFGQS-VSGLASGDEDIQNYHEAIRRLQETRL 326 (437) T ss_pred C-CCceEEEcCCcceEEEecC--cCCHHHHHHHHHHHHHHHhcCchhhhcCcC-cccccccHHHHHHHHHHHHHHHHHHH Confidence 3 4567888888888888654 345667888888899987666642222222 23347788888889999999987644 Q ss_pred HHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccH-------HHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc Q lcl|Aclame:pro 223 DVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQ-------PVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER 294 (355) Q Consensus 223 ~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~-------~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~ 294 (355) .-+.+.|++.|+.--|+...+--.|+|...- .+. +..+++++++++.|++.++. ..+.+++.-.++.-.++ T Consensus 327 ~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~~~g~i~~~e-~r~~L~~~g~~~~i~~~ 405 (437) T protein:vir:52 327 RPIFEIIDPLICNELFGGLPADWWFEFVPLTTVKQEQQINMLNTFATAANTLIQNGVLNEYQ-IANELRESGLFANISAE 405 (437) T ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEeCCcCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHhcCCCCCCCcc Confidence 4444568888887778754432356665332 222 45567788899999876532 23444443222211111 Q ss_pred cccccccccccCCccccccccccccccCCcccCcc Q lcl|Aclame:pro 295 DDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPR 329 (355) Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (355) +....+.......+...+...... +.....++ T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 437 (437) T protein:vir:52 406 HIEELKNADEFAGNFEEPEKMEGA---QVQNSEDQ 437 (437) T ss_pred ccccccCCCCCCCccCCCCCCCCC---CCCCCCCC Confidence 111111111111111111111111 11111111 No 93 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=99.08 E-value=1.5e-09 Score=68.95 Aligned_cols=293 Identities=13% Similarity=0.038 Sum_probs=155.3 Q ss_pred CeEEEEeeeCCE------EEEeeeeecCccceeeeeecCCCc--eEEEeecC--CCCCCceeeCCccEEEEecCC-CCCc Q lcl|Aclame:pro 1 MFEQVYRIENGR------ARLGKLAWRPPRTISRFDVAPDGG--LVAIEQWG--VFGKATVRIPVDRLVVFVNER-EGAN 69 (355) Q Consensus 1 V~Eivw~~~~g~------~~~~~l~~r~~~~i~~f~~~~~g~--l~~~~q~~--~~g~~~~~ip~~k~i~~~~~~-~~~~ 69 (355) +.+|++... |. -.+..|.+.++.++. +..+.++. +.+..+.+ ..+.....+|...+||+++.. ..+. T Consensus 140 y~~i~r~~~-g~l~~~~~g~~~~l~~l~~~~v~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~ 217 (466) T protein:vir:81 140 YWTIVDGEF-VRMRPDWVDVVVEERMVRGGRGE-LGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLAS 217 (466) T ss_pred EEEEEecCc-cccccccCcceeEEEEecCcceE-EEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccc Confidence 777776421 22 226678888888775 44555553 33322211 122345678999999887543 3456 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC---Cc Q lcl|Aclame:pro 70 WLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG---EA 146 (355) Q Consensus 70 p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G---~~ 146 (355) .||.|.+..+....-.-....++-..+...- +.|-++........ + + ..+.+++...+...| .. T Consensus 218 ~~G~s~i~~~~~~i~~~~a~~~~~~~~f~ng--~~p~gil~~~~~l~---~----e----~~~~~~~~~~~~~~g~~n~g 284 (466) T protein:vir:81 218 YRGMSWLTPILREIRADQAMSKHQAKFFDNG--ATVNLVIKHNPMAD---P----A----AVKKWADEVNSKHAGVDNAW 284 (466) T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEecCCCCC---H----H----HHHHHHHHHHHHhcCccccc Confidence 7899999999988877777777777777653 34544433332211 1 1 122344444433333 12 Q ss_pred eeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc--CCccchhhhHHHH-HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 AGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG--DKSTGSYALGDTF-ASFFTGSLNAVMKHIAD 223 (355) Q Consensus 147 ~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~--~~~~GS~Al~~vh-~~v~~~~~~ad~~~i~~ 223 (355) ..++++.|++++-++.+.....|.+..++..++|++++..+-...+- +.+.++|+-.+-+ .......+.-.++.|++ T Consensus 285 ~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~ 364 (466) T protein:vir:81 285 KNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSG 364 (466) T ss_pred cceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 35899999999988776666678889999999999998776432221 1122445433333 34456677888899999 Q ss_pred HHHHHHHHHHHHhCCCCcccccEEEecCCC---ccHHHHH-------HHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC Q lcl|Aclame:pro 224 VTQQHVVEDLVDQNWGPEEPAPRLVPAQLG---KEQPVTA-------EAIRALVECGAFTADPELEKDLRARYGLPAPAE 293 (355) Q Consensus 224 ~ln~~li~~l~~lNf~~~~~~P~~~~~~~~---~d~~~~a-------e~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~ 293 (355) .||+.|++. ..... -+|+|+... .|.++.+ +.++.+++.|+ . .+++|..... T Consensus 365 ~l~~~L~~~------~~~~~-~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g~-t-----~nE~r~~~~~----- 426 (466) T protein:vir:81 365 CIGHVMPDM------GPDVR-LWYDADDVPFLREDEKDAADIQKVRAETINTLITAGY-E-----PESVVAAVNS----- 426 (466) T ss_pred HHHhhcCCc------ccCcc-eEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcCC-C-----hhhccccccC----- Confidence 999866542 11111 145554332 2444444 34677888886 2 2455543221 Q ss_pred ccccc-cccc----cccCC--ccccccccccccccCCccc Q lcl|Aclame:pro 294 RDDGA-DAAA----AKAAG--RRRAKRLPGQRQGAALPSR 326 (355) Q Consensus 294 ~~~~~-~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~ 326 (355) ++... .... ...+. ........+...+++.+.. T Consensus 427 gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~ngn 466 (466) T protein:vir:81 427 GDLRLLKHTGLTSVQLLPPGVSASASSDTPTSGGADDNGN 466 (466) T ss_pred CccccccCCCcchhhhcccccccccCCCCcccCCCCcCCC Confidence 11100 0000 00000 0000000000011111111 No 94 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=99.04 E-value=1.2e-09 Score=69.57 Aligned_cols=255 Identities=13% Similarity=0.095 Sum_probs=148.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCC----CccccchhH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREG----ANWLGQSLL 76 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~----~~p~G~~ll 76 (355) +.+|++.. +| .+..|.+.|+.++. +..+ ++++.+...... +.....+|...++++++.... +..+|.|.+ T Consensus 98 y~~i~r~~-~g--~~~~l~~l~~~~v~-i~~~-~~~~~y~~~~~~-~~~~~~~~~~evih~~~~~~~~~~~dg~~G~spi 171 (359) T protein:vir:10 98 FLAILKGD-NS--LMKELRLIPSNAIT-IDLT-DDTLTYEVNQFD-DYPSAKYNASEMIHVKIMAYGVDTLHNLVGHSPL 171 (359) T ss_pred EEEEEECC-CC--eEEEEEEeCCceEE-EEEc-CCeEEEEEEecC-CceEEEEcccceEEeccCCCCCCccCccccccHH Confidence 45666543 23 47788888888665 4444 455655433222 234567888888888765432 345799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCce--eEEccCC Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAA--GGYIPHG 154 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~--~~v~p~~ 154 (355) ..+....-......++...+... | +.|-++-+++... .+. +..+.+++......+|..+ .+|++.| T Consensus 172 ~~~~~~i~~~~~~~~~~~~~f~n-g-~~~~gil~~~~~~--l~~--------e~~~~~~~~~~~~~~~~n~g~~~vl~~g 239 (359) T protein:vir:10 172 ESLTSEIGQQKEANRLSLSTLKG-A-LNPTSVVKVPQGT--LSS--------EAKDSIRKEFEKANGGNNSGRVMVLDQS 239 (359) T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-c-CCcceEEEeCCCC--CCH--------HHHHHHHHHHHHHhCccccCCceecCCC Confidence 99988888877788877777753 3 3454443332111 111 1223344444545444433 5889999 Q ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDK-STGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDL 233 (355) Q Consensus 155 ~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~-~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l 233 (355) ++++-++.+.....|.+..++..++|++++..+--..+..+ ...+++. + ++.....+.--+..++..|+..|.+.+ T Consensus 240 ~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~--~-e~~~~~~l~~~l~p~~~~l~~~l~~~~ 316 (359) T protein:vir:10 240 ADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQ--I-KDLYVNALNRFIEPLISELRIKCDSSI 316 (359) T ss_pred cceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHH--H-HHHHHHHHHHHHHHHHHHHHHHhhhhh Confidence 99998876655556888889999999999888754342211 1122222 1 233333333334444555554443332 Q ss_pred HHhCCCCcccccEEEecCCCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCC Q lcl|Aclame:pro 234 VDQNWGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPA 292 (355) Q Consensus 234 ~~lNf~~~~~~P~~~~~~~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~ 292 (355) .++... .+.+ +...+...+.++++.|+.. .+++|+.+|+|+-= T Consensus 317 -~~~~~~-----~~~~-----d~~~~~~~~~~~~~~G~~t-----~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 317 -GVDMSP-----ITDY-----SNSVFKADILNWVKEGIIE-----PTEAKTLLESKGII 359 (359) T ss_pred -cccchh-----hhhc-----CHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCC Confidence 222110 1111 2344455677899999865 47899999997432 No 95 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.04 E-value=3.7e-09 Score=66.80 Aligned_cols=298 Identities=14% Similarity=0.085 Sum_probs=154.0 Q ss_pred CeEEEEeeeCC--------------E-EEEeeee--ecCccceeeeeec----CCCceEEEee-----------cCCCCC Q lcl|Aclame:pro 1 MFEQVYRIENG--------------R-ARLGKLA--WRPPRTISRFDVA----PDGGLVAIEQ-----------WGVFGK 48 (355) Q Consensus 1 V~Eivw~~~~g--------------~-~~~~~l~--~r~~~~i~~f~~~----~~g~l~~~~q-----------~~~~g~ 48 (355) ..=|+-...++ . -.+..|. ++.|-+...+..| ..|+...++- ....+. T Consensus 115 ~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~ 194 (461) T protein:vir:80 115 DGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTAS 194 (461) T ss_pred cEEEEEEeecCCccccCccCCcccccccceeEEEeccccccchhhhcccCcCcccccceEEEEeccccccccccccccCc Confidence 11111000000 0 0111111 1111111011111 1133222211 112233 Q ss_pred CceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 49 ATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 49 ~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) ....+-+.++|++......+..+|.|++..+|....--.....--+..+.++ .+++.+.+-- . +... T Consensus 195 ~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~--~~~v~k~~~l-~----------~~~~ 261 (461) T protein:vir:80 195 TSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMDTSLWSVGQILYDF--AFKVYKTDDI-D----------ALNK 261 (461) T ss_pred cceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh--CCCceecchH-H----------hhhc Confidence 4466888899998888877888999999999998866666666667777776 4566554311 1 1111 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS 208 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~ 208 (355) .....+.+.+..++.+ .+.+++..+.+++.++.+ ..+.+.+++..-.+|+-+.--+..-+-+.+ .|..|.|+-... T Consensus 262 ~~~~~~~~~~~~~~~~-~g~~~~d~~e~~e~~~~~--lsgl~~~l~~~~~~iaa~s~iP~t~L~G~s-~g~~asge~D~~ 337 (461) T protein:vir:80 262 DDKANLTAMLDFMFRT-EALAIIKGDEQLTKESTN--VSGMKDLLDYGWDYLAGAVRMPKTVLKGQE-AGTLTGAQYDVM 337 (461) T ss_pred hHHHHHHHHHHHhcCC-ceEEEEcCCcceEEEecC--cCCHHHHHHHHHHHHhhhhcCCeeeeeccc-CCccccchHHHH Confidence 1222344444555544 456778888899888764 345677888888888888666643232333 366787888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Cc-cc---ccEEEecCCC-ccHHH-------HHHHHHHHHhCCCccc Q lcl|Aclame:pro 209 FFTGSLNAVMKHIADVTQQHVVEDLVDQNWG--PE-EP---APRLVPAQLG-KEQPV-------TAEAIRALVECGAFTA 274 (355) Q Consensus 209 v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~--~~-~~---~P~~~~~~~~-~d~~~-------~ae~~~~l~~~G~~~~ 274 (355) .+-+.+++.+.....-+.+.|++.|+.--|+ +. .+ --.|.|.+.. .+.++ .+++++++++.|++.+ T Consensus 338 ~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~ 417 (461) T protein:vir:80 338 NYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDP 417 (461) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCH Confidence 9999999999764444445588877653332 11 11 1246666443 23333 4567888899998665 Q ss_pred chhhHHHHHHHhCCCCCCCc--ccccccc-ccccCCccccccccc Q lcl|Aclame:pro 275 DPELEKDLRARYGLPAPAER--DDGADAA-AAKAAGRRRAKRLPG 316 (355) Q Consensus 275 ~~~~~~~~~e~~glp~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 316 (355) +. ..+.++.++++.++..- .+..... ............++| T Consensus 418 ~e-~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g 461 (461) T protein:vir:80 418 DE-VKETRFGRFGLENSSKFSGDSAEIDKLAKLVYDAYAKKNADG 461 (461) T ss_pred HH-HHHHHHHhcCCCCCccCCCCCchhhhhhhhccccccccCCCC Confidence 32 23445566777433211 1100000 000000000001111 No 96 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=99.04 E-value=5.4e-10 Score=71.39 Aligned_cols=227 Identities=8% Similarity=-0.032 Sum_probs=138.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) +.+++... +|. +..|.+.|+.+++ ...+.+|..+...-....| ....+|...+|++++....+.++|.|.+..+. T Consensus 51 ~~~i~r~~-~G~--~~~l~~l~~~~v~-v~~~~~~~~~~y~~~~~~g-~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~ 125 (278) T protein:vir:78 51 YVLIERDI-YHQ--PSKLFLLNPDVVE-MLIENQSRELYYSIHAATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLK 125 (278) T ss_pred EEEEEECC-CCc--EEEEEEECCceeE-EEEcCCCceEEEEEEcCCc-eEEEEccccEEEECCCCCCCCeeeccHHHHHH Confidence 56666643 343 7789999988886 4556665544333222233 34678888888887665667789999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ...-....... |. ..+++.+ |-++...+...+ ++ ..+..++.+.+ ...++...++++.|++++-+ T Consensus 126 ~~i~~~~~~~~-~~--~~~~~~~-~~~i~~~~~~l~---~e----~~~~~~~~~~~----~~~~~g~~~vl~~g~~~~~l 190 (278) T protein:vir:78 126 NTTDFDNAVRT-FN--LTEMQKP-DSFMLKYGSNVG---KE----KRQQVLEDFKQ----YYEENGGILFQEPGVEIEPL 190 (278) T ss_pred HHHHHHHHHHH-HH--HHHhcCC-CcEEEEeCCCCC---HH----HHHHHHHHHHH----HhccCCCceecCCCceEEEc Confidence 77665544433 33 2345544 333333222211 11 12222223333 33344567899999999888 Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA-SFFTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) Q Consensus 161 ~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~ 239 (355) +.+.....|.+..++..++|++++..+...++ ...+++++..+-+. ......+.-.++.|++.||+.|++.--.. T Consensus 191 ~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg-~~~~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~--- 266 (278) T protein:vir:78 191 PKKYVSEDIVASENLTRERVANVFQLPSVFLN-ARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDRE--- 266 (278) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhc--- Confidence 77666667889999999999999988754443 22345666555544 45566789999999999999887642110 Q ss_pred CcccccEEEecCCCc Q lcl|Aclame:pro 240 PEEPAPRLVPAQLGK 254 (355) Q Consensus 240 ~~~~~P~~~~~~~~~ 254 (355) ... +|+|+...= T Consensus 267 -~g~--~~~f~~~~l 278 (278) T protein:vir:78 267 -KIG--ILNLTLNLI 278 (278) T ss_pred -CCc--eEEEecccC Confidence 111 344432111 No 97 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=99.01 E-value=2.1e-09 Score=68.12 Aligned_cols=270 Identities=12% Similarity=0.033 Sum_probs=135.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) .+-++++ ++...+..+.++.+..+. .+..... .+. .......+|...++++++....+.+++.++...+. T Consensus 97 ~~~~~~r--~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~----~~~~~~~~~~~evih~~~~~~~~~~~~~~~~~~~~ 166 (376) T protein:vir:78 97 CLIVLSD--TDDFLIADSYVRKEFAFF---PDVFEGV-TVK----DYRYNRNFSMDDVIFLEYGNERLSAFTDGMFEDYG 166 (376) T ss_pred EEEEEEe--CCCeeeccceeeccccee---eeeeeee-eee----cceeeeeeccccEEEeccCCCCchhhhhHHHHHHH Confidence 2222221 333344455555544321 1111111 111 11112357888888888877777777766654432 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-eEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGV-PIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~-p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) -. .+ ..+..+ +++.+. +.++....... +++ +.+...+.+.+.......+....++++.|++++- T Consensus 167 ~~--~~----~~~~~~--~~~~~~~~~~~~~~~~~~---~~e----~~~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~ 231 (376) T protein:vir:78 167 EL--FG----KMIRAQ--MRNFQIRGAVNFKMAGVA---DKD----KQTKLQEYIDKVYASFNNNEIAIVPQLEGFNYEE 231 (376) T ss_pred HH--HH----HHHHHH--HhcCCCceeEEEccCCCC---CHH----HHHHHHHHHHHHhccccccCcceEEcCCCceEEe Confidence 11 11 111112 233343 33433322111 111 1111222222222222223334566899999988 Q ss_pred eccCCCc-----ccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 TGVQGKL-----PEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALG-DTFASFFTGSLNAVMKHIADVTQQHVVEDL 233 (355) Q Consensus 160 ~~~~g~~-----~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~-~vh~~v~~~~~~ad~~~i~~~ln~~li~~l 233 (355) ++.+... ..|.+..++..++|++++..+.-..+ |+++-. +.........+.-.++.|++.||+.|+++ T Consensus 232 l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~-----~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~- 305 (376) T protein:vir:78 232 FGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLH-----GDMADLSNNMKAYMEYCIDPLTKKLEDELNAKLFTF- 305 (376) T ss_pred eccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc- Confidence 8765422 25777888899999999888653332 233322 22334555667788888999998877543 Q ss_pred HHhCCCCcccccEEEecC-CCccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc--cccccccccccCCccc Q lcl|Aclame:pro 234 VDQNWGPEEPAPRLVPAQ-LGKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER--DDGADAAAAKAAGRRR 310 (355) Q Consensus 234 ~~lNf~~~~~~P~~~~~~-~~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~--~~~~~~~~~~~~~~~~ 310 (355) ....-+|.+.. ...|.++.+++++++++.|+.. .+++|+.+|+|+-+.+ +....+. -..+.... T Consensus 306 -------~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~lg~~p~~~g~~d~~~~~~-n~~~~~~~ 372 (376) T protein:vir:78 306 -------SEFLAGEHIKIIHKKDIIENAEAVDKLVASGSFN-----RNEVRELLGAERVDNPELDKYLITK-NYQSADEG 372 (376) T ss_pred -------ccceecccchhhcccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeecc-Cceehhcc Confidence 11112222222 2247789999999999999765 4789999999864443 2222111 11111100 Q ss_pred cccccc Q lcl|Aclame:pro 311 AKRLPG 316 (355) Q Consensus 311 ~~~~~~ 316 (355) .+.| T Consensus 373 --~e~g 376 (376) T protein:vir:78 373 --GEDG 376 (376) T ss_pred --ccCC Confidence 0011 No 98 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=98.97 E-value=3e-09 Score=67.32 Aligned_cols=277 Identities=10% Similarity=-0.024 Sum_probs=137.7 Q ss_pred CeEEEEee-eCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRI-ENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~-~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) ...+++.. -.|.-.... ..-+..|+++.+.. .. ....+|++.+|++++. . +--.|.|++..+ T Consensus 94 ~~~~~~~lll~Gna~i~~-----------~~~~~~g~~~~l~p--~~--~~~~~~~~diiH~~~~-~-~~~~g~s~l~~~ 156 (378) T protein:vir:94 94 WRKVIKKLLSAPYVDLYA-----------VFDDNTGELLDLLF--AD--DKKEYKPEELVRLTSP-F-YINEDTSILDNA 156 (378) T ss_pred HHHHHHHHhhcCceEEEE-----------EeeCCCceEEEEEe--cC--CeeEeeeeeeEEecCc-C-CccchhHHHHHH Confidence 11111111 111111100 01123345544432 11 2346778888876632 2 223477877766 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCceE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGANF 157 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~i 157 (355) ....- .+.. .+.|-++.+....- + +...+..++.+++...+...|.. ..++++.|+++ T Consensus 157 ~~~i~----------~~~~---~~~~~gil~~~~~l---~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~ 216 (378) T protein:vir:94 157 LASIQ----------TKLE---QGKLRGLLKINAFL---D----IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEI 216 (378) T ss_pred HHHHH----------HHHh---cccccceeeeCCcC---C----HHHHHHHHHHHHHHHHHhhcccccccceecCCCceE Confidence 54321 1111 12222222221111 1 12233345566666666554443 35889999998 Q ss_pred EEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 158 TLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN 237 (355) Q Consensus 158 e~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN 237 (355) +-++.+.....+. ..++..++|++++..+.-... |+++ .+-........+.-.++.|+..||+.|++.--.-. T Consensus 217 ~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVP~~~l~-----~~~s-e~~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~ 289 (378) T protein:vir:94 217 VELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL-----GTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRV 289 (378) T ss_pred EEccCChhhhhHH-HHHHHHHHHHHHhCCCHHHhc-----CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhh Confidence 8877665555554 347888999999888643231 3333 23344556677788889999999988876532211 Q ss_pred CCCcc--cccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccC--Cccccc Q lcl|Aclame:pro 238 WGPEE--PAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAA--GRRRAK 312 (355) Q Consensus 238 f~~~~--~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~--~~~~~~ 312 (355) +.... ..++|.++... .|.++.++.++++++.|+.. .+++|+.+|+|+-+.+|....+..-... ...... T Consensus 290 g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~ 364 (378) T protein:vir:94 290 VKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFT-----QNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQG 364 (378) T ss_pred hhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeeeecccccccccchhhcC Confidence 11111 11334444333 36788999999999999875 4789999999876555543322111100 000011 Q ss_pred cccccccccCCccc Q lcl|Aclame:pro 313 RLPGQRQGAALPSR 326 (355) Q Consensus 313 ~~~~~~~~~~~~~~ 326 (355) ...+...+.+.+.+ T Consensus 365 ~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 365 SRKDVTSTDETNNQ 378 (378) T ss_pred CcCCCCCCCCCCCC Confidence 11111111111111 No 99 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=98.92 E-value=6.6e-09 Score=65.43 Aligned_cols=277 Identities=10% Similarity=-0.005 Sum_probs=134.5 Q ss_pred CeE-EEEee-eCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFE-QVYRI-ENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~E-ivw~~-~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.| +++.. -.|...+. ...-+..|+++.+.... ....+|.+.+||+++. ...-.|.|++.. T Consensus 93 f~~~~~~~lll~Gna~i~-----------~~~d~~~g~~~~l~~~~----~~~~~~~~diih~r~~--~~~~~~~s~l~~ 155 (378) T protein:vir:16 93 FWRKVIKKLLRAPYVDLY-----------AVFDDNTGELLDLLFAD----DKKEYKPEELVRLTSP--FYINEDTSILDN 155 (378) T ss_pred HHHHHHHHHhhcCceEEE-----------EEeecCCceEEEEEecC----CeeEecccceEEecCc--cCccchhHHHHH Confidence 111 11111 01111110 00112234454443221 2345777777777632 122235666665 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCce Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGAN 156 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~ 156 (355) +.... ..+.. .|.|-++.+.... .+ +...+..++.+++...+...|.. ..++++.|++ T Consensus 156 ~~~~i----------~~~~~---~~~~~g~l~~~~~---l~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~ 215 (378) T protein:vir:16 156 ALASI----------QTKLE---QGKLRGLLKINAF---LD----IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTE 215 (378) T ss_pred HHHHH----------HHHHh---cCccceeeEeCCc---CC----HHHHHHHHHHHHHHHHHhhcccccccceEcCCCce Confidence 54332 11221 1223222221111 11 11223345566666666655544 3588999999 Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 157 ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) ++-++.+.....+.. .++..++|++++..+.-... |+++- +-........+.-.++.|++.||+.|++.--.. T Consensus 216 ~~~l~~~~~~~~~~~-~~~~~~~Ia~~fgVPp~~l~-----g~~~e-~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~ 288 (378) T protein:vir:16 216 IVELKKDYSVLNKDE-IDLIKSELLTGYFMNENILL-----GTASQ-EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRR 288 (378) T ss_pred EEEccCChhhhhHHH-HHHHHHHHHHHhCCCHHHhc-----CCchH-HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhh Confidence 888876655555544 47888999999888743331 33332 223344456778888999999998887642111 Q ss_pred CC-CCc-ccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCC--cccc Q lcl|Aclame:pro 237 NW-GPE-EPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAG--RRRA 311 (355) Q Consensus 237 Nf-~~~-~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~--~~~~ 311 (355) .+ +.. ....+|.++... .|.++.++.+.++++.|+.. .+++|+.+|+|+-+.++....+..-.... .... T Consensus 289 ~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~ 363 (378) T protein:vir:16 289 VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFT-----QNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQ 363 (378) T ss_pred hhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeEeeccccccccchhhhc Confidence 11 000 111234444333 36688999999999999865 47899999998765554433222111000 0000 Q ss_pred ccccccccccCCccc Q lcl|Aclame:pro 312 KRLPGQRQGAALPSR 326 (355) Q Consensus 312 ~~~~~~~~~~~~~~~ 326 (355) ........+.+.+.+ T Consensus 364 ~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 364 GSRKDVTSTDETNNQ 378 (378) T ss_pred CccCCCCCCCCCCCC Confidence 111111111111111 No 100 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=98.86 E-value=2.5e-08 Score=62.31 Aligned_cols=283 Identities=10% Similarity=0.021 Sum_probs=134.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ...++. ..+.+.+. ...+.. .. ........+- ........+++..+|++++....+.+++.|++.... T Consensus 101 yi~~~~--~~~~~~~~-~~~~~~------~~-~~~~~~~~~~--~~~~~~~~~~~~evih~k~~~~~~~~~~~~~~~~~~ 168 (395) T protein:vir:98 101 LIFVIP--GKGIYVAD-SFTQDK------KI-SGSQFKVSRV--QGQTYEKTFTFDQVIYLKNDNSDLMSKVESLWEEYG 168 (395) T ss_pred EEEEEe--CCceecCC-cccccc------cc-cCcccceeee--cCceeeeEecCccEEEecCCCCCccccccchhhhHH Confidence 212221 11111111 110000 00 0000001100 001112457788888888877777777777765433 Q ss_pred HHHH--HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 81 KNWL--LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 81 ~~~~--~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) ...- ........-..+...++.+..+..++... +.....+ ...+.+.+......++...+++++.|++++ T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~ 240 (395) T protein:vir:98 169 ELLGHVINNQKIANQIRFTMIPPKDKVRERAQENS-----DGGRQSK---SDKDFFKRTVEKIRTESVVGIPVTANTNYE 240 (395) T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccccC-----CcHHHHH---HHHHHHHHHHhhhhcCCcceeecCCCceeE Confidence 2210 11111111112222222111111111111 1111111 122233444444444556677789999988 Q ss_pred EeccCCCc------ccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTGVQGKL------PEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVE 231 (355) Q Consensus 159 ~~~~~g~~------~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al-~~vh~~v~~~~~~ad~~~i~~~ln~~li~ 231 (355) -++.+... ..+.++.++.-++|++++..+.-... |+++- .+.........+.-.++.|++.||+.|++ T Consensus 241 ~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~-----~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~ 315 (395) T protein:vir:98 241 EYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH-----GDIADNQKNYELLLEGPIESLITNIVDGLEYAIFD 315 (395) T ss_pred ecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc-----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 87654322 13666777888999999888754332 33442 22334455667888889999999988876 Q ss_pred HHHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC--ccccccccccccCCc Q lcl|Aclame:pro 232 DLVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE--RDDGADAAAAKAAGR 308 (355) Q Consensus 232 ~l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~--~~~~~~~~~~~~~~~ 308 (355) .-- . ...-+|.++..- .|.++.++.++++++.|+.. .+++|+.+|+|+-.+ ++.......- .+-. T Consensus 316 ~~~-~-----~~g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~g~~Pi~~~~gD~~~~~~n~-~~~~ 383 (395) T protein:vir:98 316 KSE-T-----LQGSFIKVTGLKNYDLFSISNQADKLISSGFVF-----IDEVREEIGLPELPDGLGKVLYMTKNY-ESVL 383 (395) T ss_pred hhh-h-----cCcceeeehhhhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeecccc-eecc Confidence 421 1 112256665443 47789999999999999865 479999999986433 3322221111 0000 Q ss_pred cccccccccccccCCc Q lcl|Aclame:pro 309 RRAKRLPGQRQGAALP 324 (355) Q Consensus 309 ~~~~~~~~~~~~~~~~ 324 (355) .+.++... ...+ T Consensus 384 --~~gge~~~--~~~~ 395 (395) T protein:vir:98 384 --ERGGEVDE--EVET 395 (395) T ss_pred --cccCCCCC--CCCC Confidence 01111111 0110 No 101 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=98.83 E-value=3.2e-08 Score=61.71 Aligned_cols=312 Identities=11% Similarity=0.069 Sum_probs=147.1 Q ss_pred CeEEE-Eee-eCCEE-------------------------EEeeeeecCccceee-----eeecC----CCceEEEeecC Q lcl|Aclame:pro 1 MFEQV-YRI-ENGRA-------------------------RLGKLAWRPPRTISR-----FDVAP----DGGLVAIEQWG 44 (355) Q Consensus 1 V~Eiv-w~~-~~g~~-------------------------~~~~l~~r~~~~i~~-----f~~~~----~g~l~~~~q~~ 44 (355) +.|.+ |.+ -+|.. .++.|...+|.++.- +..|. .|+...++ T Consensus 163 l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~--- 239 (537) T protein:vir:10 163 AIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWL--- 239 (537) T ss_pred HHHHHHhcccccceEEEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCCccccCCceeee--- Confidence 11110 100 01111 112222233221210 00010 12212211 Q ss_pred CCCCCceeeCCccEEEEecCC------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCcccc Q lcl|Aclame:pro 45 VFGKATVRIPVDRLVVFVNER------EGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIAR 118 (355) Q Consensus 45 ~~g~~~~~ip~~k~i~~~~~~------~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~ 118 (355) ..+..+-+.++|++.... ...+.+|.|+|..+|....--.....--+..+.++. +++.+.+... ... T Consensus 240 ---v~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~--~~v~k~~~~~--~l~ 312 (537) T protein:vir:10 240 ---INGKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKR--QTVLKVDAAQ--VLA 312 (537) T ss_pred ---ecCeEecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceeeechHH--hhc Confidence 112345667777764332 234567999999999887655555555567777763 5665543211 111 Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccC-CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCcc Q lcl|Aclame:pro 119 DTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPH-GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKST 197 (355) Q Consensus 119 d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~-~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~ 197 (355) + .+ .+....+++..++ ++...++++. +.+++.+..+-+ ....+++..-..|+-+.--+..-+-+.+.+ T Consensus 313 ~---~~-----~~~~r~~~~~~~r-~n~g~~~id~e~e~~e~~~~~ls--gl~~~l~~~~~~iAa~~~IP~t~L~G~sp~ 381 (537) T protein:vir:10 313 N---KQ-----QFDETMSWWTATR-DNYQVRVVDKDNEDVVQIDTTLN--DLDKVIMNQYQLVCAIARTPAPKMLGTVPT 381 (537) T ss_pred C---HH-----HHHHHHHHHHhhc-CCcceeEecCCCceeEEEeccCC--CHHHHHHHHHHHHHhhhCCCceeeccCCcc Confidence 1 11 1122222333333 3345566776 488888765433 456788888888888755543222233334 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccHHH-------HHHHHHHHHhC Q lcl|Aclame:pro 198 GSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQPV-------TAEAIRALVEC 269 (355) Q Consensus 198 GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~~~-------~ae~~~~l~~~ 269 (355) |..|.|+-....+-+.+++.+..|...+++ |++.|+..-|+.. ..-.|.|.... .+.++ .+++++++++. T Consensus 382 GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~-l~~ll~~~~~~~~-~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~ 459 (537) T protein:vir:10 382 GFNSTGDYEEASYHEECESTQDDMRPLIDR-HHQLVCRSHLRKR-IRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEM 459 (537) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCC-cceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHc Confidence 667778888899999999998888888865 8888887777653 22355666433 24444 45668888899 Q ss_pred CCcccchhhHHHHHHHhCC---------CCCCCccccccccccccCCc---cccccccccccccCCcccCccccchhHHH Q lcl|Aclame:pro 270 GAFTADPELEKDLRARYGL---------PAPAERDDGADAAAAKAAGR---RRAKRLPGQRQGAALPSRSPRADPPRRRG 337 (355) Q Consensus 270 G~~~~~~~~~~~~~e~~gl---------p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (355) |++. .+.+|+.++. ....+.++...........+ .+....++. .........++.++...+ T Consensus 460 G~i~-----~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 532 (537) T protein:vir:10 460 GAVD-----GVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRIIEDQPAPSE--MFGATSSGESANDPRDSG 532 (537) T ss_pred CCCC-----HHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCCCCCCCCCccc--cCCCCccccccCCCccCc Confidence 9765 3567777643 21111111110000000000 000111110 011111111222222222 Q ss_pred HHhHh Q lcl|Aclame:pro 338 PLRRR 342 (355) Q Consensus 338 ~~~~~ 342 (355) ..-+. T Consensus 533 a~~~~ 537 (537) T protein:vir:10 533 AAFED 537 (537) T ss_pred cccCC Confidence 22222 No 102 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=98.81 E-value=2.6e-08 Score=62.17 Aligned_cols=276 Identities=10% Similarity=-0.023 Sum_probs=137.1 Q ss_pred CeEEEEeee-CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIE-NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~-~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) ...+++..- .|...+- + ..-+..|+++.+... .....+|++.+||+++. ..-..|.|++..+ T Consensus 94 ~~~~~~~lll~Gn~~i~--~---------~~~~~~g~~~~l~~~----~~~~~~~~~diih~r~~--~~~~~~~s~l~~~ 156 (378) T protein:vir:93 94 WRKVIKKLLRAPYVDLY--A---------VFDDNTGELLDLLFA----DDKKEYKTEELVRLTSP--FYINEDTSILDNA 156 (378) T ss_pred HHHHHHHHhhcCceEEE--E---------EeecCCceEEEEEec----CCeeEeccceeEEecCc--cccchhhHHHHHH Confidence 111222110 1111110 0 011233455544322 12456788888876632 1222367777765 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCCceE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGANF 157 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~~~i 157 (355) .-.. ..+.. .|.|-++.+.... .+ +...+..++.+++...+...|.. ..++++.|+++ T Consensus 157 ~~~i----------~~~~~---~~~~~g~l~~~~~---l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 216 (378) T protein:vir:93 157 LASI----------QTKLE---QGKLRGLLKINAF---LD----IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEI 216 (378) T ss_pred HHHH----------HHHHh---cCcccceeeeCCc---CC----HHHHHHHHHHHHHHHHHhhcccccccceEcCCCceE Confidence 5332 12222 1223222222111 11 11223345556666666655543 35888999998 Q ss_pred EEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h Q lcl|Aclame:pro 158 TLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD-Q 236 (355) Q Consensus 158 e~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~-l 236 (355) +-++.+.....+ ...++..++|++++..+.-... |+++ .+.........+.-.++.|++.||+.|++.--. . T Consensus 217 ~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~-----g~~~-e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~ 289 (378) T protein:vir:93 217 VELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL-----GTAT-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRV 289 (378) T ss_pred EEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc-----CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhh Confidence 888766554455 4457888999999888642221 3333 223344556678889999999999988754211 1 Q ss_pred CCCC-cccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCc---ccc Q lcl|Aclame:pro 237 NWGP-EEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGR---RRA 311 (355) Q Consensus 237 Nf~~-~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~---~~~ 311 (355) .++. .....+|.++... .|.++.++++.++++.|+.. .+++|+.+|+|+-+.+|....... ..+.. ... T Consensus 290 ~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t-----~NE~R~~~gl~p~~ggD~~~~~~n-~~~~~~~~~~~ 363 (378) T protein:vir:93 290 VKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFT-----QNQLLVKMGEQPIEGGDVYIANLN-AVAVKNLSDLQ 363 (378) T ss_pred hhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeeeeccc-cccccchhhhc Confidence 1110 0111344444433 36789999999999999865 478999999986655443222211 11111 111 Q ss_pred ccccccccccCCccc Q lcl|Aclame:pro 312 KRLPGQRQGAALPSR 326 (355) Q Consensus 312 ~~~~~~~~~~~~~~~ 326 (355) +...+...+.+.+.+ T Consensus 364 ~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 364 GSRKDVTSTDETNNQ 378 (378) T ss_pred CccCCCCCCCCCCCC Confidence 111111111111111 No 103 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=98.76 E-value=4.6e-08 Score=60.79 Aligned_cols=327 Identities=13% Similarity=0.088 Sum_probs=144.9 Q ss_pred CeEEEEee--eCC----------EE---EEeeeeecCcccee-----eeeecC----CCceEEEeecCCCCCCceeeCCc Q lcl|Aclame:pro 1 MFEQVYRI--ENG----------RA---RLGKLAWRPPRTIS-----RFDVAP----DGGLVAIEQWGVFGKATVRIPVD 56 (355) Q Consensus 1 V~Eivw~~--~~g----------~~---~~~~l~~r~~~~i~-----~f~~~~----~g~l~~~~q~~~~g~~~~~ip~~ 56 (355) ..=++... +++ .+ .++.|...++.++. .+..|. .|+-..+. . .+..|-+. T Consensus 181 ga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~---i---~g~~IH~S 254 (765) T protein:vir:96 181 VRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWI---I---SGKKYHRS 254 (765) T ss_pred eeEEEEEecccCcchhhccccccccccceeeEEEEechhhcccccchhccccccccccCcceeee---e---cCceeccc Confidence 11111111 110 00 11222222221110 011111 11111111 1 12245566 Q ss_pred cEEEEecCC------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHH Q lcl|Aclame:pro 57 RLVVFVNER------EGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQ 130 (355) Q Consensus 57 k~i~~~~~~------~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~ 130 (355) ++|++.... ...+.+|.|+|..+|....--.....--+.++.++. +.+++.+... ...+ .++ . T Consensus 255 Rli~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~--~~v~k~~~~~--~l~~---~~~----l 323 (765) T protein:vir:96 255 HLVVVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKR--TSTIHVDVEK--AIAN---EDA----F 323 (765) T ss_pred eEEEecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhc--cceeeechHh--hhcc---HHH----H Confidence 777664322 345677999999999887665556666677777764 4565543211 1111 111 1 Q ss_pred HHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH Q lcl|Aclame:pro 131 KEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF 210 (355) Q Consensus 131 ~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~ 210 (355) .+.+..+ ..++ ++.+.+++..+.+++.++.+ ..+...+++..-.+|+-+.--+..-+-+.+-.|-.|.|+.-...+ T Consensus 324 ~~r~~~~-~~~r-~n~g~~~id~ee~~e~~s~~--lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nY 399 (765) T protein:vir:96 324 NARLAFW-IANR-DNHGVKVIGIDETMEQFDTN--LSDFDSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISY 399 (765) T ss_pred HHHHHHH-HHhc-CCceeEEecCCcceeEEecc--cCCHHHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHH Confidence 2223222 2222 45667889999999988754 345677888888888887666542222333356677788788889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccH-------HHHHHHHHHHHhCCCcccchhhHHHH Q lcl|Aclame:pro 211 TGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQ-------PVTAEAIRALVECGAFTADPELEKDL 282 (355) Q Consensus 211 ~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~-------~~~ae~~~~l~~~G~~~~~~~~~~~~ 282 (355) -+.+++.+.....-+.+.|++.|+.... ..+--.|+|.... .+. +..+++++++++.|++. .+.+ T Consensus 400 yD~I~s~Qe~~l~p~le~L~~li~~s~~--i~~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~Gvis-----~dEv 472 (765) T protein:vir:96 400 HEELESIQEHIFDPLLERHYLLLAKSES--IDVQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINSGVVS-----PDEV 472 (765) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC-----HHHH Confidence 9999998866444444558888776432 2222356665432 233 34567788899999765 3567 Q ss_pred HHHhCC------CCCCCcccccccccc--c------cCCccccc--------ccccccccc-CCcccCccccchh----- Q lcl|Aclame:pro 283 RARYGL------PAPAERDDGADAAAA--K------AAGRRRAK--------RLPGQRQGA-ALPSRSPRADPPR----- 334 (355) Q Consensus 283 ~e~~gl------p~~~~~~~~~~~~~~--~------~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~----- 334 (355) |+++.- ..-.+++....+... . ...+.... +.+....++ +.-+..|.+..+. T Consensus 473 R~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~~~~~~~~p~~~~p~~~~~~ 552 (765) T protein:vir:96 473 RERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQSAKAKGEAERAEAQAGAVEGAGDPVPAAPRGTKPLAKAAE 552 (765) T ss_pred HHHHhccccCCCCCCCccccccccCCCccccccccCCCcccccccCccccccCCCCccCCCCcccccCCcccCCcccccc Confidence 777642 111111100000000 0 00000000 000000000 0000000000000 Q ss_pred ---HHH--HHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 335 ---RRG--PLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 335 ---~~~--~~~~~~~~~~~~~~~~~~ 355 (355) ..+ +.++.......++..++. T Consensus 553 ~~~g~~~~~p~~~~p~~~~~~~~~~~ 578 (765) T protein:vir:96 553 EGAGEAATPPSRPNPRAELRNLLSDL 578 (765) T ss_pred ccCccccCccccccccccchhcccch Confidence 000 000111111222222322 No 104 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=98.68 E-value=1.1e-07 Score=58.69 Aligned_cols=322 Identities=14% Similarity=0.051 Sum_probs=147.1 Q ss_pred CeEEEEeee--C----------------CEEEEeeeeecCccceee--eee-c----CCCceEEEeecCCCCCCceeeCC Q lcl|Aclame:pro 1 MFEQVYRIE--N----------------GRARLGKLAWRPPRTISR--FDV-A----PDGGLVAIEQWGVFGKATVRIPV 55 (355) Q Consensus 1 V~Eivw~~~--~----------------g~~~~~~l~~r~~~~i~~--f~~-~----~~g~l~~~~q~~~~g~~~~~ip~ 55 (355) .+=++-..+ + +.-.++.|...+|.++.- +.. | ..|+-..+.- . .+..+.+ T Consensus 156 ~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v--~---~g~~iH~ 230 (532) T protein:vir:94 156 GAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIA--T---SGKKIHS 230 (532) T ss_pred ceEEEEEeccCCccccccccccccccccccceeeEEEeechheecccccccccccccccCCceeEEE--c---cCeeecc Confidence 111111110 0 011123444444432210 110 0 0122222211 1 1235777 Q ss_pred ccEEEEecCC------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHH Q lcl|Aclame:pro 56 DRLVVFVNER------EGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLND 129 (355) Q Consensus 56 ~k~i~~~~~~------~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~ 129 (355) .++|+|.... ...+.+|.|++..+|....--.....--+..+.++ .+.+.+... ....... .++. T Consensus 231 SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~--~~~v~k~~~---a~~ls~~-~~~~--- 301 (532) T protein:vir:94 231 SRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQF--SMTNLATDM---AQLLAPG-GAQS--- 301 (532) T ss_pred ceEEEecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceeeech---HHhhcch-hHHH--- Confidence 8888775332 23466899999999988766555555556677776 456654321 1111111 1111 Q ss_pred HHHHHHHHHHHHhcCCceeEEccC-CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH Q lcl|Aclame:pro 130 QKEEGLQLAKEFRAGEAAGGYIPH-GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS 208 (355) Q Consensus 130 ~~~~l~~~~~~~~~G~~~~~v~p~-~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~ 208 (355) ..+.+ +++...+ ++...++++. +.+++.+..+ ..+.+.+++..-++|+-++--+..-+-+.+-+|-.|.|+.... T Consensus 302 ~~~r~-~~~~~~~-~n~g~~~id~~~e~~e~~~~~--lsgl~~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~ 377 (532) T protein:vir:94 302 LDARL-QLFNLYR-DNRNIGALDKGTEEIQQTNTP--LSGLDSLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIR 377 (532) T ss_pred HHHHH-HHHHhhc-CCccceEEcCCCceeEEEecc--cCCHHHHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHH Confidence 11112 2222222 3455677775 4678888644 3346778888888888765554322223333455566777888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccHH-------HHHHHHHHHHhCCCcccchhhHH Q lcl|Aclame:pro 209 FFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQP-------VTAEAIRALVECGAFTADPELEK 280 (355) Q Consensus 209 v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~~-------~~ae~~~~l~~~G~~~~~~~~~~ 280 (355) .+-+.+++.......-+.+.|++.|+..-|+...+--.|+|...- .+.+ ..++.++++++.|++. .+ T Consensus 378 ~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~~~~d~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~-----~~ 452 (532) T protein:vir:94 378 VWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQIDPGLAWEWSPLMELDDKELAEVRQLNASTDSTLMELGVID-----AK 452 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC-----HH Confidence 899999988866544444558888877667654433356676432 2333 3466677888888754 46 Q ss_pred HHHHHhCCCCCCCcc----------ccccccc--cccCCccccccccccccccCCccc-CccccchhHHHHHhHhhhchH Q lcl|Aclame:pro 281 DLRARYGLPAPAERD----------DGADAAA--AKAAGRRRAKRLPGQRQGAALPSR-SPRADPPRRRGPLRRRPRHPA 347 (355) Q Consensus 281 ~~~e~~glp~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (355) .+|+.++...-...+ +...... .....+.+.....+..+...+..+ +........+....++ T Consensus 453 Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----- 527 (532) T protein:vir:94 453 MVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQPDSEDDQTDNQPDAQADPAQNDQ----- 527 (532) T ss_pred HHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccCC----- Confidence 788888764211000 0000000 000000000000000000000000 0000000000111111 Q ss_pred HhhhcCCC Q lcl|Aclame:pro 348 HRRCAPDG 355 (355) Q Consensus 348 ~~~~~~~~ 355 (355) |-| T Consensus 528 -----~~~ 530 (532) T protein:vir:94 528 -----PVG 530 (532) T ss_pred -----CcC Confidence 222 No 105 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=98.67 E-value=1.2e-07 Score=58.49 Aligned_cols=281 Identities=9% Similarity=-0.014 Sum_probs=132.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) -+=++..+ ++...+.....+... ... .....++-. .......+|+..++|+++......+++.|+..... T Consensus 99 na~~~~~~-~~~~~~~~~~~~~~~------~~~-~~~~~v~~~--~~~~~~~~~~~dvih~k~~~~~~~~~~~~~~~~~~ 168 (395) T protein:vir:96 99 ETLIFVIP-GKGIYVADAFTQDKK------LSG-NKFKVSRVQ--GQTYEKIFTFDQVIYLKNDNSDLMLKVESLWEEYG 168 (395) T ss_pred ceEEEEEc-CCceecCCccccccc------ccc-ceeeeeeec--cceeeeEeccCceEEecccCCccccccccccchHH Confidence 11111111 222222111111100 000 000011100 01112357888888888776666666665544222 Q ss_pred H------HHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC Q lcl|Aclame:pro 81 K------NWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG 154 (355) Q Consensus 81 ~------~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~ 154 (355) . ....+....++...+.... +.|..+..... ... ++..+ +.+.+......+|..+.++++.| T Consensus 169 ~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~-~~~~~---~~~~~~~~~~~~~~~~v~~l~~g 236 (395) T protein:vir:96 169 ELLGHVINNQKIANQIRFTMTPPKDK--VRERAQENSDG------GRQ-PKSDK---DFFKRTIEKIRTESVVGIPVTAN 236 (395) T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc--cccceeeccCc------hhh-HHHHH---HHHHHHHHHhhcCCcceEEccCC Confidence 1 1222223334444443321 33333322211 111 11111 22333333444566667778999 Q ss_pred ceEEEeccCCCccc------HHHHHHHHHHHHHHHHhhhhhccccCCccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPE------MDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQ 227 (355) Q Consensus 155 ~~ie~~~~~g~~~~------~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al-~~vh~~v~~~~~~ad~~~i~~~ln~ 227 (355) ++++-++.+..... |.++...+-++|++++..+.-... |+++- .+.........+.-.++.|++.||+ T Consensus 237 ~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~-----~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~ 311 (395) T protein:vir:96 237 TNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH-----GDIADNQKNYELLLEGPIESLITNIVDGLEY 311 (395) T ss_pred ceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99887766543332 344445667899999888754332 23332 2333445556778888889999988 Q ss_pred HHHHHHHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC--ccccccccccc Q lcl|Aclame:pro 228 HVVEDLVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE--RDDGADAAAAK 304 (355) Q Consensus 228 ~li~~l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~--~~~~~~~~~~~ 304 (355) .|++.--. ...-+|.++..- .|.++.++.++++++.|+.. .+++|+.+|+|+-+. ++....+.. . T Consensus 312 ~Ll~~~e~------~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~~gl~pi~~~~gD~~~~~~N-~ 379 (395) T protein:vir:96 312 AIFDKSET------LEGSFIKVTGLKNYDLFSISSQADKLISSGFVF-----IDEVREEIGLPELPDGLGKVLYMTKN-Y 379 (395) T ss_pred hcCChhhh------cCceeEeecchhccCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCCceeeeccc-c Confidence 77654211 011145555433 37789999999999999765 478999999986433 222221111 0 Q ss_pred cCCccccccccccccccCCc Q lcl|Aclame:pro 305 AAGRRRAKRLPGQRQGAALP 324 (355) Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~ 324 (355) .+ ...+.++.... ..+ T Consensus 380 ~~--~~~~gge~~~~--~~~ 395 (395) T protein:vir:96 380 ES--VLERGGEVDEE--VET 395 (395) T ss_pred ee--chhccCCCCCC--CCC Confidence 00 00111111111 100 No 106 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=98.66 E-value=1.4e-07 Score=58.24 Aligned_cols=275 Identities=10% Similarity=0.037 Sum_probs=133.2 Q ss_pred CeE-EEEee-eCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFE-QVYRI-ENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~E-ivw~~-~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) +.| +++.. -.|...+.. ...+.+|++..+.... .+..+|++.++++++.. +.+. +.+++.. T Consensus 93 f~~~~~~~lll~Gnayi~~-----------i~~~~~g~~~~~~~~~----~~~~~~~~dvih~~~~~-~~~~-~~~~~~~ 155 (378) T protein:vir:94 93 FWQKVIKKLLTTRYIDLYP-----------IFDSETGELLDLLFAN----DKKEYKPEELVRLTSPF-YINE-DTSILDN 155 (378) T ss_pred HHHHHHHHHhhcCCeEEEE-----------EeeCCCCcEEEEEEec----CcEEechhceeeecCcC-Cccc-chhHHHH Confidence 222 11111 112111100 1124556666554322 23457777777665322 2221 3456665 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCce--EEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCC Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVP--IYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHG 154 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p--~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~ 154 (355) +.-... .+.. . +.+ +++.+.. .+ ++..+...+.+++...+...|.. ..++++.| T Consensus 156 ~~~~~~----------~~~~-~--~~~~g~l~~~~~-----l~----~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g 213 (378) T protein:vir:94 156 ALASIQ----------TKLE-Q--GKLRGLLKINAF-----LD----IDNTQEYREKALATIKNMQEGSSYNGLTPVDNK 213 (378) T ss_pred HHHHHH----------HHHh-h--CCcccceeeCCc-----CC----HHHHHHHHHHHHHHHHHhhcccccccceeccCC Confidence 543211 1111 1 122 1222211 11 11233345566666666654444 35888999 Q ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 155 ~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++++-++.+.+..+. +.+++..++|++++..+.-... |+++- +-........+.-.++.|++.||+.|++.-- T Consensus 214 ~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~-----g~~~e-~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e 286 (378) T protein:vir:94 214 TEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL-----GTATQ-EQQIYFYNSTIIPLLIQLEKELTYKLISTNR 286 (378) T ss_pred ceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhc-----CCchH-HHHHHHHHHHHHHHHHHHHHHHHhhcCChhH Confidence 999888765554555 4457888999999888632221 23331 1112344556777888888888888775321 Q ss_pred HhCCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc-C-Ccc Q lcl|Aclame:pro 235 DQNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA-A-GRR 309 (355) Q Consensus 235 ~lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~-~-~~~ 309 (355) ..-+-....+-.+.|+ ... .|.++.++++.++++.|+.. .+++|+.+|+|+-+.++....+..-.. . ... T Consensus 287 ~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t-----~NE~R~~~g~~p~~ggd~~~~~~n~~~~~~~~~ 361 (378) T protein:vir:94 287 RRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFT-----QNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSD 361 (378) T ss_pred hhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeeeecccccchhcchh Confidence 1111011111234443 332 37789999999999999865 478999999987655554332211110 0 000 Q ss_pred ccccccccccccCCccc Q lcl|Aclame:pro 310 RAKRLPGQRQGAALPSR 326 (355) Q Consensus 310 ~~~~~~~~~~~~~~~~~ 326 (355) ......+...+.+.+.+ T Consensus 362 ~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 362 LQGNRKDVTSTDETNNQ 378 (378) T ss_pred cccccCCCCCCCCCCCC Confidence 01111111111111111 No 107 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=98.61 E-value=2e-07 Score=57.36 Aligned_cols=293 Identities=9% Similarity=0.025 Sum_probs=136.6 Q ss_pred CeEEEEeeeCCE---------EEEeeeeecCcccee--eeeec----CCCceEEEeecCCCCCCceeeCCccEEEEec-- Q lcl|Aclame:pro 1 MFEQVYRIENGR---------ARLGKLAWRPPRTIS--RFDVA----PDGGLVAIEQWGVFGKATVRIPVDRLVVFVN-- 63 (355) Q Consensus 1 V~Eivw~~~~g~---------~~~~~l~~r~~~~i~--~f~~~----~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~-- 63 (355) -+=|+-...++. -.++.|...++.++. .+..| ..|+...++-.+..+..+..+-+.+++++.. T Consensus 106 ~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~~~~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~ 185 (435) T protein:vir:79 106 GSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHERETNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGER 185 (435) T ss_pred cEEEEEEecCCCCcccccccCCceeeEEeechhhccchhhccCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCc Confidence 000000100000 012233333332221 01111 1233333332222333455677888887752 Q ss_pred ----CCCCCccccchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 64 ----EREGANWLGQSLL-RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLA 138 (355) Q Consensus 64 ----~~~~~~p~G~~ll-~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~ 138 (355) ....++++|.|.| +.+|....--.....--+..+.|+. +.+.+.+--... ......+.. ....+ .++ T Consensus 186 ~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~--~~v~~~~~l~~~--~~~~~~~~~---~~~r~-~~~ 257 (435) T protein:vir:79 186 VSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQ--QAVWKARDLALM--CDDEEGRYA---ARLRL-AQV 257 (435) T ss_pred chhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccccchhHHHh--hcCccchHH---HHHHH-HHH Confidence 2356789999965 7899877666666666677777763 455443311111 000001100 11111 222 Q ss_pred HHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 139 KEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVM 218 (355) Q Consensus 139 ~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~ 218 (355) ...++...+.++...+.+++.++.+ ..+...+++..-.+|+-+.--+..-+-+.+.+|-.|.|+-....+-+.+++.+ T Consensus 258 ~~~~~~~~~~~i~~~~e~~e~~~~~--lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Q 335 (435) T protein:vir:79 258 DDESGVGKAIGIDATDEEYEVLNSD--VSGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFYKLIDRKR 335 (435) T ss_pred HHhcCCCCceeEecCCcceEEEecc--cCCHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHH Confidence 2233333445556666778888654 34578888888889998876664323233334444667777788888888877 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccH-------HHHHHHHHHHHhCCCcccchhhHHHHHHHh---- Q lcl|Aclame:pro 219 KHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQ-------PVTAEAIRALVECGAFTADPELEKDLRARY---- 286 (355) Q Consensus 219 ~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~-------~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~---- 286 (355) .....-+.+.|++.++. ..+ -.|+|...- .+. +..+++++++++.|++.+ +.+|+.+ T Consensus 336 e~~l~p~l~~l~~li~~----s~d--~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~i~~-----~e~r~~L~~~~ 404 (435) T protein:vir:79 336 VEDYKPILEFLLPFMIS----ETE--WSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQAINL-----KETRDTLRSIC 404 (435) T ss_pred HHHHHHHHHHHHHHhhc----CCC--CeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHhc Confidence 55433333345555432 111 245554322 122 456778888899998764 3444433 Q ss_pred ---CCCCCCCccccccccccccCCcccccccccc Q lcl|Aclame:pro 287 ---GLPAPAERDDGADAAAAKAAGRRRAKRLPGQ 317 (355) Q Consensus 287 ---glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (355) |+.. +..... +.+....+......+... T Consensus 405 ~~~~~~~--~~~~~~-~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 405 PDLKIMD--NDNIEL-PEPEDLDPEPGQEGGLNK 435 (435) T ss_pred cccCCCC--cccccC-CccccCCCCCCCCCCCCC Confidence 3321 110100 001110111111111111 No 108 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=98.61 E-value=2e-07 Score=57.30 Aligned_cols=274 Identities=10% Similarity=0.010 Sum_probs=128.8 Q ss_pred CeE-EEEee-eCC--EEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhH Q lcl|Aclame:pro 1 MFE-QVYRI-ENG--RARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLL 76 (355) Q Consensus 1 V~E-ivw~~-~~g--~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll 76 (355) +.| +++.. -.| ++.| ..-+.+|++.++.... .+..+.+..+|+|+..-.... +.+.+ T Consensus 93 f~~~~~~~lll~Gnayi~~-------------i~~~~~g~~~~~~~~~----~~~~~~~~dvih~~~~~~~~~--~~~~~ 153 (378) T protein:vir:85 93 FWQKVIKKLLCTRYVDLYP-------------IFDSETGELLDLLFAN----DKKEYKPEELVRLVSPFYINE--DTSIL 153 (378) T ss_pred HHHHHHHHHhhcCCeEEEE-------------eecCCCceEEEEEecC----CCEEEcccceEEEecCcCccc--hhhHH Confidence 111 11110 011 1111 1123456655544321 233455667777763221111 12333 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc--eeEEccCC Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHG 154 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~--~~~v~p~~ 154 (355) ..+.-. . ..+. +. |.|-++.+.... .+++ .....++.+++...+...|.. ..++++.| T Consensus 154 ~~a~~~------~----~~~~-~~--~~~~g~l~~~~~---l~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g 213 (378) T protein:vir:85 154 DNALAS------I----QTKL-EQ--GKLRGLLKINAF---LDID----NTQEYREKALATIKNMQEGSSYNGLTPVDNK 213 (378) T ss_pred HHHHHH------H----HHHH-hc--CCcceEEEeCCc---CCHH----HHHHHHHHHHHHHHHhhcccccccceecCCC Confidence 333211 1 1111 12 333222222111 1111 222334555565555544332 46889999 Q ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 155 ~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++++-++.+....++ +.+++..++|++++..+.-... ||++. +-........+.-.++.|+..||+.|++.-- T Consensus 214 ~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~-----~s~~e-~~~~~f~~~tL~P~~~~ie~~l~~kLl~~~e 286 (378) T protein:vir:85 214 TEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILL-----GTATQ-EQQIYFYNSTIIPLLIQLEKELTYKLISTNR 286 (378) T ss_pred ceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc-----CCchH-HHHHHHHHHHHHHHHHHHHHHHHhhcCChhh Confidence 999888766555565 4467888999999888642221 34432 2223355566777888888888887764310 Q ss_pred -HhCCCCcccccEEEec--CCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccccccccc-C-Cc Q lcl|Aclame:pro 235 -DQNWGPEEPAPRLVPA--QLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKA-A-GR 308 (355) Q Consensus 235 -~lNf~~~~~~P~~~~~--~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~-~-~~ 308 (355) ...++.. ..-+|.|+ ... .|.++.++.+.++++.|+.. .+++|+.+|+|+-+.++....+..-.. . .. T Consensus 287 r~~~~~~~-~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T-----~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~~ 360 (378) T protein:vir:85 287 RRVVKGNL-YYERIIVDNQLFKFATLKELIDLYHENINGPIFT-----QNQLLVKMGEQPIEGGDIYIANLNAVAVKNLS 360 (378) T ss_pred hhhhhhcc-ccceeeecchhhhhcCHHHHHHHHHHHHhCCCcC-----HHHHHHHhCCCCCCCCCeEeecccccccccch Confidence 0111100 01123443 322 46789999999999999876 478999999986655544332211110 0 00 Q ss_pred cccccccccccccCCccc Q lcl|Aclame:pro 309 RRAKRLPGQRQGAALPSR 326 (355) Q Consensus 309 ~~~~~~~~~~~~~~~~~~ 326 (355) ...+...+...+.+.+.+ T Consensus 361 ~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:85 361 DLQGSRKDVASTDETNNQ 378 (378) T ss_pred hhcCccCCCCCCCCCCCC Confidence 111111111111111111 No 109 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=98.50 E-value=3.5e-07 Score=55.99 Aligned_cols=307 Identities=8% Similarity=-0.050 Sum_probs=134.5 Q ss_pred CeEEEEeeeCCEEEEeeeeec------Cc-------cceeeeeec-CCCc------------eEEEeecCCCC------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR------PP-------RTISRFDVA-PDGG------------LVAIEQWGVFG------- 47 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r------~~-------~~i~~f~~~-~~g~------------l~~~~q~~~~g------- 47 (355) .++++|--++|++.+.-+.++ ++ .-+.+|... .++. +..++...... T Consensus 143 ~~~~v~~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~ 222 (503) T protein:vir:59 143 EYWHPFVDEEGEFDYVIFPAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYG 222 (503) T ss_pred EEEEEeecCCCceEEEEEccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCccccccccc Confidence 666666544554332221110 00 001112111 1111 11111110000 Q ss_pred ---------CCceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCcc Q lcl|Aclame:pro 48 ---------KATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAI 116 (355) Q Consensus 48 ---------~~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~ 116 (355) ....+.+..+ ++.| ..|+.|.|.+..+-...=.-...+..++..++.+..++.++++..+... T Consensus 223 ~~~~~~~~~~~~~~~~~~~vPiv~~-----~nn~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~- 296 (503) T protein:vir:59 223 ENNPRPHMTKGGQAIGWGRVPIIPF-----KNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENP- 296 (503) T ss_pred ccccccceeecceeccCCccceEEe-----cCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCcccc- Confidence 0011111111 1222 2577899988876555444455667777788888877777665432211 Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCc Q lcl|Aclame:pro 117 ARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKS 196 (355) Q Consensus 117 ~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~ 196 (355) + ....++ .....+.++.+.+++++........++..++.+.+.|.+.-.+..++.+..++ T Consensus 297 ----~--------------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~ 356 (503) T protein:vir:59 297 ----K--------------EFTANL--RYHSVIKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETIGG 356 (503) T ss_pred ----c--------------hhhhhh--hcccceeccCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccccc Confidence 0 111122 22345678888899999877777889999999999998887666554432222 Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--CCCc-c--cccEEEecCCCc-cHHHHHHHHHHHHhC Q lcl|Aclame:pro 197 TGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ-N--WGPE-E--PAPRLVPAQLGK-EQPVTAEAIRALVEC 269 (355) Q Consensus 197 ~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l-N--f~~~-~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~ 269 (355) ..|.-.-.....-....+..-.+.+...|.+ ++..++.+ + .+.. . .-..+.|....+ +..+.++.+.+|+++ T Consensus 357 ~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~-~~~~i~~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~ 435 (503) T protein:vir:59 357 GATGPALENLYALLDLKANMAERKIRAGLRL-FFWFFAEYLRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTG 435 (503) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhC Confidence 1121111122222222334444555556643 55554432 2 2211 1 113666765554 668899999999999 Q ss_pred CCcccchhhHHHHHHHhCC-CCCCCccccc-cccccccC-CccccccccccccccCCcccCccccchhHHHHHh Q lcl|Aclame:pro 270 GAFTADPELEKDLRARYGL-PAPAERDDGA-DAAAAKAA-GRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLR 340 (355) Q Consensus 270 G~~~~~~~~~~~~~e~~gl-p~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (355) |+.. .+.+.+.++. +.+..+-+.. .+...... .........+...... +...+.......++.++ T Consensus 436 GiiS-----~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 503 (503) T protein:vir:59 436 GIMS-----KETAVARNPFVQDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEE-DDPNAGAAESGGAGQVS 503 (503) T ss_pred CCCc-----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCCc-CCCCCCcccCCCCCCcC Confidence 9643 4566666654 2222110000 00000000 0000000000000000 00000011111111111 No 110 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=98.49 E-value=4.5e-07 Score=55.36 Aligned_cols=282 Identities=13% Similarity=0.088 Sum_probs=123.1 Q ss_pred CeEEEE----eeeC--CEEEEeee-eec-----Ccc-ceeeeeecCCCceEEEeecCC---CCCCceeeCCccEEEEecC Q lcl|Aclame:pro 1 MFEQVY----RIEN--GRARLGKL-AWR-----PPR-TISRFDVAPDGGLVAIEQWGV---FGKATVRIPVDRLVVFVNE 64 (355) Q Consensus 1 V~Eivw----~~~~--g~~~~~~l-~~r-----~~~-~i~~f~~~~~g~l~~~~q~~~---~g~~~~~ip~~k~i~~~~~ 64 (355) ..-++| ...+ +.|.-+.. .+| |-. .+.+|+. .+++....-.... .+...-.||- +++-.. T Consensus 149 l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~l~~IP~---v~~~~~ 224 (452) T protein:vir:94 149 LLMVVLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHET-QDGKVWELAKTSTIQNVGVTMDYIPF---FCITPS 224 (452) T ss_pred eeEEEEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEc-cCCceeeeccceeecCCCcccceeEE---EEEcCC Confidence 111222 1111 11111100 000 100 1112222 2222211111111 1111112442 322222 Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 65 REGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG 144 (355) Q Consensus 65 ~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G 144 (355) ..+--.+.+.|..++..-+---....+.-..+..-+.|+|++.+-... + .++.| T Consensus 225 -~~~~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~~-----~--------------------~i~iG 278 (452) T protein:vir:94 225 -GLSMTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAESQ-----S--------------------TMHIG 278 (452) T ss_pred -CCCCCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcCC-----C--------------------ceEec Confidence 222234555455544432221122233334444445677777653210 0 13448 Q ss_pred CceeEEccC-CceEEEeccCCCc-ccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 145 EAAGGYIPH-GANFTLTGVQGKL-PEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIA 222 (355) Q Consensus 145 ~~~~~v~p~-~~~ie~~~~~g~~-~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~ 222 (355) +.+++.+|+ |.++.+++.+|++ ..++..++....+|.. +.+..+...+.+...+-|. .....-...++..-+..++ T Consensus 279 ~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~~m~~-~Ga~ll~~~~~~~~s~ea~-~~~~~~~~s~L~~~a~~~e 356 (452) T protein:vir:94 279 STKAWVIPEVAAKVGFLEFTGQGLQSLEKALSEKQAQLAS-LSARLIDNSTRGSEATETV-KLRYMSETASLKSVTRAVE 356 (452) T ss_pred ccccccCCCCCCcceEEccCchhHHHHHHHHHHHHHHHHH-HHHHhhccCCCcchHHHHH-HHHHHHhhHHHHHHHHHHH Confidence 888999996 9999999998876 4577777777777632 2333333221111111111 1233333567778888889 Q ss_pred HHHHHHHHHHHHHhCCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccc Q lcl|Aclame:pro 223 DVTQQHVVEDLVDQNWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGAD 299 (355) Q Consensus 223 ~~ln~~li~~l~~lNf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~ 299 (355) +.++ +++.++..+-.- +.-.+|.+.. . ...+....+++.++.+.|.+.. .....+ .++.|++.++.+.+... T Consensus 357 ~al~-~~l~~~a~w~g~--~~~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~-~t~~~~-L~~~gvl~~~~e~~~i~ 431 (452) T protein:vir:94 357 ALLN-KAYSCIMDMESM--GGTLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISK-EIYIHA-LKVGKVLPPPGESMGVI 431 (452) T ss_pred HHHH-HHHHHHHHHcCC--CCceEEEeccccccccCCHHHHHHHHHHHhcCCCcH-HHHHHH-HHhCCCCCCccCHHHHH Confidence 9996 488888886542 2224565442 1 2233455667777888996442 111122 23458876655443322 Q ss_pred cc-ccccCCcccccccccccc Q lcl|Aclame:pro 300 AA-AAKAAGRRRAKRLPGQRQ 319 (355) Q Consensus 300 ~~-~~~~~~~~~~~~~~~~~~ 319 (355) .. +.+.+.+...+..+++.+ T Consensus 432 ~E~~~~~~~~~~~~~~~~~~~ 452 (452) T protein:vir:94 432 PDPPAPEPSPSNTPPNPSSKA 452 (452) T ss_pred HHhhccCcccCCCCCCCccCC Confidence 21 112111122222222222 No 111 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=98.48 E-value=5e-07 Score=55.13 Aligned_cols=289 Identities=11% Similarity=-0.042 Sum_probs=131.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceEE-----------------------EeecCCCCC------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLVA-----------------------IEQWGVFGK------- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~~-----------------------~~q~~~~g~------- 48 (355) +++++|.-++|++.+.-+ +|..+. ..+++ .+.+.. ++.... +. T Consensus 140 ~~~~v~~d~~~~~~i~~~---~p~~~~-~v~d~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~ 214 (474) T protein:vir:95 140 DWLQVYINENGEMKLFRV---PAEQAI-PIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENG-GLIPDYYYG 214 (474) T ss_pred EEEEEEecCCCceEEEEE---cccceE-EEEcCCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCC-ccccccccC Confidence 888888666666543322 222111 11111 122211 111100 00 Q ss_pred ------CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccch Q lcl|Aclame:pro 49 ------ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDT 120 (355) Q Consensus 49 ------~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~ 120 (355) ...+.+..+ ++.| ..|+.|.|.+..+....=--...+.+++..++.+..|+.++++-.+.. . T Consensus 215 ~~~~~~~~~~~~~g~iPvv~~-----~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~-----~ 284 (474) T protein:vir:95 215 ANHIQSHFSNGNWGRVPFIAF-----KNNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGYEGQD-----L 284 (474) T ss_pred cccccccccccCCCccceEee-----cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccc-----c Confidence 000001111 1222 247889999988666555556677888888888888777776543221 0 Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh Q lcl|Aclame:pro 121 ARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY 200 (355) Q Consensus 121 ~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~ 200 (355) . ....++. ....+.++.+.+++++....+...++..++.+.+.|...-.+..++.++-++..|. T Consensus 285 ~--------------~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg 348 (474) T protein:vir:95 285 E--------------EFMRGLK--YYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKFGSAPSG 348 (474) T ss_pred h--------------hhhhhhh--ccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchH Confidence 0 0111121 13356678889999998777777899999999999998776666554322111111 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhh Q lcl|Aclame:pro 201 ALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEE-PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPEL 278 (355) Q Consensus 201 Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~-~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~ 278 (355) ..=..........+..-.+.+...|. ++++.++.+...... ....+.|....+ +..+.++ .|+++|++. T Consensus 349 ~Alk~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~g~~~d~~~i~v~f~~~~p~d~~e~a~---~~~~~g~iS----- 419 (474) T protein:vir:95 349 IALKFLYGNLDLKANKLKNKATVAIQ-ELIGFIIDFNNLKMDVKDIEISFNFNRMMNDAEQSQ---IIAQSQYLS----- 419 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEeccCCCcCHHHHHH---HHHhcCCCc----- Confidence 11111111222233344455566663 466666665432211 122455655444 3444444 455678643 Q ss_pred HHHHHHHhCC-CCCCCccccccccccccCCcccc---ccccccccccCCcccCcc Q lcl|Aclame:pro 279 EKDLRARYGL-PAPAERDDGADAAAAKAAGRRRA---KRLPGQRQGAALPSRSPR 329 (355) Q Consensus 279 ~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 329 (355) .+.+.+.++. +.+..+-+............... ...+..........+.+. T Consensus 420 ~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 474 (474) T protein:vir:95 420 RETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNDKESE 474 (474) T ss_pred hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccCCCCcCCCCCccCCCC Confidence 4566666654 33322111111100000000000 001111111111111111 No 112 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=98.48 E-value=5.1e-07 Score=55.09 Aligned_cols=303 Identities=11% Similarity=-0.026 Sum_probs=141.5 Q ss_pred CeEEEEee----eCCEEEEeeeeecCcccee-----------eeeecCCCceEEEe-e-cCC---CCCCceeeCCccEEE Q lcl|Aclame:pro 1 MFEQVYRI----ENGRARLGKLAWRPPRTIS-----------RFDVAPDGGLVAIE-Q-WGV---FGKATVRIPVDRLVV 60 (355) Q Consensus 1 V~Eivw~~----~~g~~~~~~l~~r~~~~i~-----------~f~~~~~g~l~~~~-q-~~~---~g~~~~~ip~~k~i~ 60 (355) +.-++|.. ++|.-++-+|..++|..|. =+++|+.|+.+.+. . ..+ ...+.+.+|...+|| T Consensus 147 f~~~~~~~~~~~~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH 226 (502) T protein:vir:79 147 FAQMVSGRINSLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLH 226 (502) T ss_pred EEEEeecccCccCCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEE Confidence 66666743 3444444456666555443 25677777754332 1 111 123446788877666 Q ss_pred EecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec-CCCCccccchhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 61 FVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGA-PLPEAIARDTARAEQWLNDQKEEGLQLAK 139 (355) Q Consensus 61 ~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~-~~~~~~~~d~~~~e~~~~~~~~~l~~~~~ 139 (355) +-...+.+..-|.|+|.++.....-........+...-. ..-+...+.. .+.............. -.. T Consensus 227 ~f~~~r~gQ~RGis~lapvl~~l~~l~~~~dael~~a~i-~A~~~~fi~~~~~~~~~~~~~~~~~~~----------~~~ 295 (502) T protein:vir:79 227 LKFVRRLHQMRGTSLLSGVLIRLSALKEYEDSELTAARI-AAALGMYIRKGDGQSYEPDGNGSKENE----------REL 295 (502) T ss_pred eecccCCccccCCchHHHHHHHHHHHhHHHHHHHHHHHH-hhhheeeeecCCCcccccccCCCCCcc----------ccc Confidence 555566889999999999988765544444333333322 2223333222 1111110000000000 001 Q ss_pred HHhcCCceeE-EccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhh--hhccccCCccchhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 140 EFRAGEAAGG-YIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDKSTGSYALGDTFASFFTGSLNA 216 (355) Q Consensus 140 ~~~~G~~~~~-v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~~~GS~Al~~vh~~v~~~~~~a 216 (355) .+ ...+.+ .++.|.+|++.+++....+|..|++..-+.|+.++.-. .||.+. + +||+.+-.-..-+...++. T Consensus 296 ~l--~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~--s-~nySs~R~~~~e~~r~~~~ 370 (502) T protein:vir:79 296 TI--QPGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNY--N-GTYSAQRQELVESTDGYLI 370 (502) T ss_pred cc--cCCccccccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--c-chHHHHHHHHHHHHHHHHH Confidence 12 112223 47899999999988888999999999999999997554 455442 2 3666554444444455555 Q ss_pred HHHHHHHHHHHHHHHHHHH---hCC----C---CcccccEEEecCC--Cc-cHHHHHHHHHHHHhCCCcccchh------ Q lcl|Aclame:pro 217 VMKHIADVTQQHVVEDLVD---QNW----G---PEEPAPRLVPAQL--GK-EQPVTAEAIRALVECGAFTADPE------ 277 (355) Q Consensus 217 d~~~i~~~ln~~li~~l~~---lNf----~---~~~~~P~~~~~~~--~~-d~~~~ae~~~~l~~~G~~~~~~~------ 277 (355) ...++...+-+-+..++++ ++. + ....+....+... .. |-.+-+++....+++|+...... T Consensus 371 ~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~ 450 (502) T protein:vir:79 371 LQDWFIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGR 450 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCC Confidence 5555555554444443322 221 1 1111222222211 11 33344556666777776542110 Q ss_pred ----------hHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccc Q lcl|Aclame:pro 278 ----------LEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 278 ----------~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) .+....+++||+.+.+. ...+. ......+..+........++ T Consensus 451 D~~~v~~q~a~e~~~~~~~Gl~~~~~~--------~~~~~-----~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 451 NPDDVKRRRKAEIDENRKLDLVFDTDP--------ASDKG-----GSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCC--------CCCCC-----CCCCCCCCCCCCCCCCCCCC Confidence 01222344455432110 00000 00000000000001111111 No 113 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.39 E-value=8.6e-07 Score=53.83 Aligned_cols=310 Identities=13% Similarity=0.052 Sum_probs=133.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee-------------eeeecCCCceEEEe--ecCCCCC---C------ceeeCCc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS-------------RFDVAPDGGLVAIE--QWGVFGK---A------TVRIPVD 56 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~-------------~f~~~~~g~l~~~~--q~~~~g~---~------~~~ip~~ 56 (355) +.-+.|....|.-++-+|..+++..|. =+++|+.|+.+.+. ...+.+. . ...+|.. T Consensus 152 f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~ 231 (533) T protein:vir:34 152 FVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRA 231 (533) T ss_pred EEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChh Confidence 566678766554344345444444333 15566667644322 1222221 1 1224444 Q ss_pred cEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-ecCCC----------CccccchhhHHH Q lcl|Aclame:pro 57 RLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQ-GAPLP----------EAIARDTARAEQ 125 (355) Q Consensus 57 k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~-~~~~~----------~~~~~d~~~~e~ 125 (355) .+||+-...+.+..-|.|+|.++.....-........+.-.-. ..-+...+ ...++ ........ ... T Consensus 232 ~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i-~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 309 (533) T protein:vir:34 232 SFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIV-KAMYAATIESELDTQSAMDFILGANSQEQRER-LTG 309 (533) T ss_pred HeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHH-hhhheeeeecCCCcccccccccCCCccccccc-ccc Confidence 4444434445889999999998877654433333222222211 11112111 11110 00000000 000 Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhh--hhccccCCccchhhhH Q lcl|Aclame:pro 126 WLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDKSTGSYALG 203 (355) Q Consensus 126 ~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~~~GS~Al~ 203 (355) ........-...-..| +......++.|.+|++++++....+|..|.+..-+.|+..+... .||.+- ...||+.. T Consensus 310 ~~~~~~~~~~~~~~~l--~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~--s~~nYSS~ 385 (533) T protein:vir:34 310 WIGEIAAYYAAAPVRL--GGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNY--AQMSYSTA 385 (533) T ss_pred cchhhhhccCcceeec--cCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhc--ccccHHHH Confidence 0000000000000012 33456778999999999988888999999999999999997554 344332 23566655 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCC----CCc---------cccc--EEEecCCCc-cHHHHHHHHH Q lcl|Aclame:pro 204 DTFASFFTGSLNAVMKHIADVTQQHVVEDLVD---QNW----GPE---------EPAP--RLVPAQLGK-EQPVTAEAIR 264 (355) Q Consensus 204 ~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~---lNf----~~~---------~~~P--~~~~~~~~~-d~~~~ae~~~ 264 (355) -.-..-+...++.....+...+-+-+...+++ ++. +.. ..+- .|....-.. |-.+-+++.. T Consensus 386 R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~ 465 (533) T protein:vir:34 386 RASANESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAV 465 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHH Confidence 44344444444555555554444444443332 231 100 0011 222111111 3344456667 Q ss_pred HHHhCCCcccchh----------------hHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCc Q lcl|Aclame:pro 265 ALVECGAFTADPE----------------LEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 265 ~l~~~G~~~~~~~----------------~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355) ..+++|+...... .+....+++||+.+.... ........+...++. T Consensus 466 ~~i~~G~~s~~~~~a~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~------~~~~s~~~~~~~~~~------------ 527 (533) T protein:vir:34 466 MLIEAGLSTYEKECAKRGDDYQEIFAQQVRETMERRAAGLKPPAWAA------AAFESGLRQSTEEEK------------ 527 (533) T ss_pred HHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCC------cCccCCCCCCCCCCc------------ Confidence 7777877542110 012223445554321110 000000000000000 Q ss_pred cccchhHH Q lcl|Aclame:pro 329 RADPPRRR 336 (355) Q Consensus 329 ~~~~~~~~ 336 (355) ++...+ T Consensus 528 --~~~~~~ 533 (533) T protein:vir:34 528 --SDSRAA 533 (533) T ss_pred --ccCCCC Confidence 010000 No 114 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=98.38 E-value=9.3e-07 Score=53.66 Aligned_cols=291 Identities=12% Similarity=0.082 Sum_probs=135.5 Q ss_pred CeEEEEeeeCCE---------EEEeeeeecCccceee--eeec----CCCceEEEeecCCCCCCceeeCCccEEEEecC- Q lcl|Aclame:pro 1 MFEQVYRIENGR---------ARLGKLAWRPPRTISR--FDVA----PDGGLVAIEQWGVFGKATVRIPVDRLVVFVNE- 64 (355) Q Consensus 1 V~Eivw~~~~g~---------~~~~~l~~r~~~~i~~--f~~~----~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~- 64 (355) .+=++-...++. -.++.|...++..+.= +..| +.|+...++-.+..+..+..+-+.+++++... T Consensus 94 ~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~ 173 (422) T protein:vir:10 94 GAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFGEPLTYRITTNESDMFYDVHYSRIHIIDGER 173 (422) T ss_pred ceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccCcceEEEEecCCCCcceeeccceeEEeCCCC Confidence 111111111100 0122232322221110 1111 12443333222222223356777777777432 Q ss_pred -----CCCCccccchhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 65 -----REGANWLGQSLLR-QAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLA 138 (355) Q Consensus 65 -----~~~~~p~G~~ll~-~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~ 138 (355) ....++||.|+|. .||....--......-+..+.|+ .+.+.+.+--... ......+.. .++.+ ..+ T Consensus 174 ~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~--~~~v~~~~~l~~~--~~~~~~~~~---~~~r~-~~~ 245 (422) T protein:vir:10 174 IPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRK--QQAVWKAKGLAEL--CDDSEGFGA---ARLRL-AQV 245 (422) T ss_pred chhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchhHHHh--cCCccchHH---HHHHH-HHH Confidence 3567788999775 47886665555555666777776 3555543321111 111111100 11111 222 Q ss_pred HHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 139 KEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVM 218 (355) Q Consensus 139 ~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~ 218 (355) .+.++...+.++...+.+++.++.+- .+...+++..-.+|+-+.--+..-+-+.+.+|-.|.|+-....+-+.+++.+ T Consensus 246 ~~~~~~~~~~~l~~~~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd~i~~~Q 323 (422) T protein:vir:10 246 DNNSGVGQAIGIDAESEEYSVLNSDI--GGIDAFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALETFHKLVDRKR 323 (422) T ss_pred HHhcCCccceeEecCCcceEEEeccc--CChHHHHHHHHHHHHhhhCCCeeeeccCCcccccccchHHHHHHHHHHHHHH Confidence 22333344556667778899886553 3467888888889988766654322233334444667777888999999888 Q ss_pred HH-HHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-cc-------HHHHHHHHHHHHhCCCcccchhhHHHHHHHhC-- Q lcl|Aclame:pro 219 KH-IADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KE-------QPVTAEAIRALVECGAFTADPELEKDLRARYG-- 287 (355) Q Consensus 219 ~~-i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d-------~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~g-- 287 (355) .. +...++ .|++.|+. +.+ -.|+|...- .+ .+..+++++++++.|++.+ +.+|+.+. T Consensus 324 e~~l~p~l~-~l~~~i~~----s~~--~~~~f~pL~~~sekekaei~~~~a~a~~~~~~~g~i~~-----~e~r~~L~~~ 391 (422) T protein:vir:10 324 NAELLPILE-FLIPFIVN----AEE--WSVEFNPLAQESSKDKAEILEKNVNSIAALIAAGAMDI-----DEARDTLRTI 391 (422) T ss_pred HHHHHHHHH-HHHHHhcc----cCC--cEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCH-----HHHHHHhhhh Confidence 64 455554 46666542 121 244444221 12 2456788888999997654 45565542 Q ss_pred -----CCCCCCccccccccccccCCccccccccccccccCCcccCccccc Q lcl|Aclame:pro 288 -----LPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 288 -----lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) +.....+++.. .......+...++ .| T Consensus 392 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----------------~d 422 (422) T protein:vir:10 392 APEVKINDGSVETEVT--ISETSNDPLEVPT-----------------DD 422 (422) T ss_pred cccccCCCCCCccccc--hhhcCCCCCCCCC-----------------CC Confidence 21110000000 0000000000000 00 No 115 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=98.37 E-value=9.9e-07 Score=53.51 Aligned_cols=302 Identities=12% Similarity=0.003 Sum_probs=133.8 Q ss_pred CeEEEEeeeCC---------EEEEeeeeecCcccee--eeeec----CCCceEEEeecCCCCCCceeeCCccEEEEecC- Q lcl|Aclame:pro 1 MFEQVYRIENG---------RARLGKLAWRPPRTIS--RFDVA----PDGGLVAIEQWGVFGKATVRIPVDRLVVFVNE- 64 (355) Q Consensus 1 V~Eivw~~~~g---------~~~~~~l~~r~~~~i~--~f~~~----~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~- 64 (355) .+=++-..+++ .-.++.|.+.++.++. .+..| +.|+...++=.+..+.....+-+.+++++... T Consensus 95 ~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~ 174 (427) T protein:vir:10 95 GAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKVSPGDNMQPYLIHHSRVFIADGER 174 (427) T ss_pred eeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCccccccCcceEEEEecCCCCcceEEccccEEEecCCC Confidence 11111111110 0012233333322211 11111 11333333222223334456777788877422 Q ss_pred -----CCCCccccchhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 65 -----REGANWLGQSLLR-QAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLA 138 (355) Q Consensus 65 -----~~~~~p~G~~ll~-~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~ 138 (355) ....++||.|+|. ++|....--......-...+.|+ .+.+.+.+- . .........+. ..+..+..+ T Consensus 175 ~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~--~~~v~k~~~-l-~~~~~~~~~~~---~~~~r~~~~- 246 (427) T protein:vir:10 175 VAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRK--QQAVWKVKG-L-AEMCDDDDAQY---AARLRLAQV- 246 (427) T ss_pred chhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchh-H-HHHhcCccchH---HHHHHHHHH- Confidence 2467889999774 56765544444444456666666 345544321 1 00000001110 011122222 Q ss_pred HHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 139 KEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVM 218 (355) Q Consensus 139 ~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~ 218 (355) ..+++...+.++..++.+++.+..+- .....+++..-.+||-+.--+..-+-+.+.+|-.|.|+-....+-+.+++.+ T Consensus 247 ~~~~~~~~~~~l~~~~e~~e~~~~~l--sgl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Q 324 (427) T protein:vir:10 247 DDNSGVGRAIGIDAETEEYDVLNSDI--SGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDRKR 324 (427) T ss_pred HHhcCcccceeeecCCCceeEEeccc--CChHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHH Confidence 22233334456666778888885443 3467778888888988866664322233334444667777888888888887 Q ss_pred HH-HHHHHHHHHHHHHHHhCCCCcccccEEEecCCC------c--cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCC Q lcl|Aclame:pro 219 KH-IADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG------K--EQPVTAEAIRALVECGAFTADPELEKDLRARYGLP 289 (355) Q Consensus 219 ~~-i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~------~--d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp 289 (355) .. +...| +.|++.|+. ..+ -.|+|...- . ..+..+++++++++.|++.++. ..++++...+.. T Consensus 325 e~~l~p~l-~~l~~~i~~----s~~--~~~~f~pL~~~s~kEkaei~~~~a~a~~~~~~~gvi~~~e-~r~~L~~~~~~~ 396 (427) T protein:vir:10 325 EEDYRPLL-EFLLPFIVD----EEE--WSIEFEPLSVPSKKEESEITKNNVESVTKAITEQIIDLEE-ARDTLRSIAPEF 396 (427) T ss_pred HHHHHHHH-HHHHHHhhc----CCC--cEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHhhhccc Confidence 55 44444 346665542 111 245554221 1 1245688889999999876532 233444332222 Q ss_pred CCCCccccccccccccCCccccccccccccccCCcccCccccc Q lcl|Aclame:pro 290 APAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) .-.+..+...........+.+ +.+++. ..++ T Consensus 397 ~~~~~~~~~~e~~~~~~e~~p-~~~e~~-----------~d~~ 427 (427) T protein:vir:10 397 KLKDGNNINIREPEETTEPEP-GLGEKL-----------EDEN 427 (427) T ss_pred cCCCCccccccccchhcCCCC-CCCCCC-----------CCCC Confidence 111111111111111100000 000000 0011 No 116 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=98.35 E-value=1.1e-06 Score=53.22 Aligned_cols=294 Identities=12% Similarity=0.002 Sum_probs=130.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceE-EEeecCCCCCCceeeC-CccEEEEecC------------ Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLV-AIEQWGVFGKATVRIP-VDRLVVFVNE------------ 64 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~-~~~q~~~~g~~~~~ip-~~k~i~~~~~------------ 64 (355) .++++|.-.+|.+...- .+|..+- ..+++ .+.++ .++.+...+.....+- +.++..|++. T Consensus 140 ~~~~~~~d~~~~~~i~~---~~p~~~~-~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~ 215 (474) T protein:vir:95 140 DWLQVYINEDGELKLFR---VPAEQAI-PIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGD 215 (474) T ss_pred EEEEeeeCCCCceEEEE---EcccceE-EEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeecccccc Confidence 88888866666544332 2222221 11221 12211 1111111110000000 0011111100 Q ss_pred ------------------CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHH Q lcl|Aclame:pro 65 ------------------REGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQW 126 (355) Q Consensus 65 ------------------~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~ 126 (355) ....|+.|.|.+..+....=--...+..++..++.|..|+.++++-.+. +.. T Consensus 216 ~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~-----~~~----- 285 (474) T protein:vir:95 216 EHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGE-----DLS----- 285 (474) T ss_pred ccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcc-----ccc----- Confidence 0124677889888755544444567788888999988877776653221 100 Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 127 LNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 127 ~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) ....++. ....+.++.+.+++++....+...++.+++.+.+.|...-.+..++.++-+ | +++.+. T Consensus 286 ---------~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~--~--n~Sg~A 350 (474) T protein:vir:95 286 ---------EFMEGLK--YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFG--S--ATSGIA 350 (474) T ss_pred ---------chhhhhh--ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccc--c--ccHHHH Confidence 1111221 123566788899999988877788999999999999888766655443221 1 122222 Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCC-cccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHH Q lcl|Aclame:pro 207 ASFFTGSL----NAVMKHIADVTQQHVVEDLVDQNWGP-EEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEK 280 (355) Q Consensus 207 ~~v~~~~~----~ad~~~i~~~ln~~li~~l~~lNf~~-~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~ 280 (355) ........ ..-.+.+...|. ++++.++.+.... ......+.|....+ +..+.++. ++++|+.. .+ T Consensus 351 lk~~~~~l~~k~~~~~~~~~~~l~-~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~---~~~~giiS-----~e 421 (474) T protein:vir:95 351 LKFLYTNLNLKANKLKNKANVALQ-ELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQI---GAQSQYLS-----KE 421 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHH---HHHcCCCC-----hH Confidence 22222222 223334455553 3666666553211 11123556654444 34444444 45567532 45 Q ss_pred HHHHHhCCC-CCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 281 DLRARYGLP-APAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 281 ~~~e~~glp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.++.- .+..+-+............ .....+..+........+.+.+.+ T Consensus 422 t~~~~lp~v~D~~~E~eri~~E~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 422 TLVRHHPWVDDPKAELERLDEEQLELNKQ--LPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhh--ccccccccCCCCCCcCCCCccccC Confidence 677777653 2221111110000000000 001111111111111111111211 No 117 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=98.35 E-value=1.1e-06 Score=53.22 Aligned_cols=294 Identities=12% Similarity=0.002 Sum_probs=130.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceE-EEeecCCCCCCceeeC-CccEEEEecC------------ Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLV-AIEQWGVFGKATVRIP-VDRLVVFVNE------------ 64 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~-~~~q~~~~g~~~~~ip-~~k~i~~~~~------------ 64 (355) .++++|.-.+|.+...- .+|..+- ..+++ .+.++ .++.+...+.....+- +.++..|++. T Consensus 140 ~~~~~~~d~~~~~~i~~---~~p~~~~-~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~ 215 (474) T protein:vir:96 140 DWLQVYINEDGELKLFR---VPAEQAI-PIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGD 215 (474) T ss_pred EEEEeeeCCCCceEEEE---EcccceE-EEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeecccccc Confidence 88888866666544332 2222221 11221 12211 1111111110000000 0011111100 Q ss_pred ------------------CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHH Q lcl|Aclame:pro 65 ------------------REGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQW 126 (355) Q Consensus 65 ------------------~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~ 126 (355) ....|+.|.|.+..+....=--...+..++..++.|..|+.++++-.+. +.. T Consensus 216 ~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~-----~~~----- 285 (474) T protein:vir:96 216 EHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGE-----DLS----- 285 (474) T ss_pred ccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcc-----ccc----- Confidence 0124677889888755544444567788888999988877776653221 100 Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 127 LNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 127 ~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) ....++. ....+.++.+.+++++....+...++.+++.+.+.|...-.+..++.++-+ | +++.+. T Consensus 286 ---------~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~--~--n~Sg~A 350 (474) T protein:vir:96 286 ---------EFMEGLK--YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFG--S--ATSGIA 350 (474) T ss_pred ---------chhhhhh--ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccc--c--ccHHHH Confidence 1111221 123566788899999988877788999999999999888766655443221 1 122222 Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCC-cccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHH Q lcl|Aclame:pro 207 ASFFTGSL----NAVMKHIADVTQQHVVEDLVDQNWGP-EEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEK 280 (355) Q Consensus 207 ~~v~~~~~----~ad~~~i~~~ln~~li~~l~~lNf~~-~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~ 280 (355) ........ ..-.+.+...|. ++++.++.+.... ......+.|....+ +..+.++. ++++|+.. .+ T Consensus 351 lk~~~~~l~~k~~~~~~~~~~~l~-~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~---~~~~giiS-----~e 421 (474) T protein:vir:96 351 LKFLYTNLNLKANKLKNKANVALQ-ELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQI---GAQSQYLS-----KE 421 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHH---HHHcCCCC-----hH Confidence 22222222 223334455553 3666666553211 11123556654444 34444444 45567532 45 Q ss_pred HHHHHhCCC-CCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 281 DLRARYGLP-APAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 281 ~~~e~~glp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.++.- .+..+-+............ .....+..+........+.+.+.+ T Consensus 422 t~~~~lp~v~D~~~E~eri~~E~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 422 TLVRHHPWVDDPKAELERLDEEQLELNKQ--LPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhh--ccccccccCCCCCCcCCCCccccC Confidence 677777653 2221111110000000000 001111111111111111111211 No 118 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=98.30 E-value=1.3e-06 Score=52.80 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=123.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|+++... | .+..|.+.|+.++. ...+|+..++..+ .....+|.+.+|+.+.-...+..||.+.+..+. T Consensus 104 y~~~~rn~~-G--~~~~L~pl~~~~v~---~~~d~~~~~~~~~----~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~ 173 (337) T protein:vir:78 104 GLLKLRNSF-G--QVVGLHPLSSVYLR---RREDGCFVYLQQG----KPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGL 173 (337) T ss_pred EEEEEECCC-C--cEEEEEEeCCceeE---eeeCCeEEEEEcC----CceEEECCccEEEECCCCCCCCcccccHHHHHH Confidence 778887543 3 47789999988664 3456776665542 234678888888776554456789999988888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEee-cCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCce--eEEcc---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQG-APLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEAA--GGYIP---- 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~-~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~~--~~v~p---- 152 (355) .....-.....+-..|.. .| +.|-++- ..++.. +++ ..+.+++.+.+..+ |+.. .+..| T Consensus 174 ~si~l~~aa~~~~~~~f~-NG-a~p~~il~~~~~~l---~~e--------~~~~lk~~~~~~~G~~n~~~~~v~~~~g~~ 240 (337) T protein:vir:78 174 QSALLNQDATLFRRRYFL-NG-AHMGFIFYATDPNM---DDD--------TEEEMKEMIANSKGVGNFRSMFVNIPDGKP 240 (337) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceeEEcCCCCC---CHH--------HHHHHHHHHHHhcCcccccceEEEcCCCCc Confidence 877776666655555554 33 3443332 222221 111 12334444444332 2222 23333 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc--cCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG--GDKSTGSYALGDTFAS-FFTGSLNAVMKHIADVTQQHV 229 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~--~~~~~GS~Al~~vh~~-v~~~~~~ad~~~i~~~ln~~l 229 (355) .|+++.-++.......|.+.-++-..+|+.+...+--.++ ..+.+|+++-.+-+.. ....-+.-.++.|++.+|+.+ T Consensus 241 ~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~ie~~~n~~l 320 (337) T protein:vir:78 241 DGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCELVQDAINSAG 320 (337) T ss_pred cceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhc Confidence 4555555555555566888888888999999887642221 1112344443343333 344566777777888877655 Q ss_pred HHHHHHhCCCCcccccEEEecCCCccHH Q lcl|Aclame:pro 230 VEDLVDQNWGPEEPAPRLVPAQLGKEQP 257 (355) Q Consensus 230 i~~l~~lNf~~~~~~P~~~~~~~~~d~~ 257 (355) ++... .+.|+....... T Consensus 321 l~~~~-----------~~~f~~~~~~~~ 337 (337) T protein:vir:78 321 LPRAL-----------WVTFRETIGAAV 337 (337) T ss_pred CChhh-----------ceeccccccccC Confidence 44321 122222111111 No 119 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=98.28 E-value=1.8e-06 Score=52.13 Aligned_cols=295 Identities=8% Similarity=-0.050 Sum_probs=132.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee-eeeecCCCceEEE-eecCCCCCCc---------------------------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS-RFDVAPDGGLVAI-EQWGVFGKAT---------------------------- 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~-~f~~~~~g~l~~~-~q~~~~g~~~---------------------------- 50 (355) .++++|.-++|.+...- .+|+.+. .|..+..++++.. +.+....... T Consensus 157 a~~~v~~d~dg~~~~~~---~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~ 233 (492) T protein:vir:97 157 EWLHPYLDEEGEFKLFR---VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLE 233 (492) T ss_pred EEEEEEecCCCceEEEE---EcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeeccccccc Confidence 88888876667644432 2232221 1111112222111 1000000000 Q ss_pred ------eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 51 ------VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 51 ------~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) .+.+..+ ++.| .+|+.|.|.+..+....=--...+..++...+.|..++.++++-... +.. T Consensus 234 ~~~~~~~~~~~g~vPvv~~-----~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~-----~~~- 302 (492) T protein:vir:97 234 NSKTHFSTGSWGKIPFIPF-----KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQ-----ELP- 302 (492) T ss_pred ccccccccCCCCCcceEEe-----cCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcc-----cch- Confidence 0001111 1222 23667899998765555455556777888888887766666553211 100 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) ....++. ....+.++.+.+++++....+...++.+++.+.+.|.+.-....++.++-++..|.-. T Consensus 303 -------------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~A 367 (492) T protein:vir:97 303 -------------EFKRLLR--YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVA 367 (492) T ss_pred -------------hHHHHHh--hccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHH Confidence 1111221 1235667889999999877777889999999999999887666555433222111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHH Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN-WGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEK 280 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN-f~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~ 280 (355) -.....-.......-.+.+...+.+ +++.++.+. ......--.+.|....+ +..+.++.+.+|. |+ ++ .+ T Consensus 368 l~~~~~~l~~ka~~~~~~f~~~l~~-~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--G~-iS----~e 439 (492) T protein:vir:97 368 LEFLYTNLNLKADKLARKAKVAIQE-LLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VS----HE 439 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcccceeeEEecCCCCCCHHHHHHHHHHHh--cc-Cc----hH Confidence 1111122222334444455555543 556555543 22111122456665555 5678888888884 65 32 45 Q ss_pred HHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 281 DLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 281 ~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.++. +.+..+-+.............+.....+...+... ..+.....+ T Consensus 440 t~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e 492 (492) T protein:vir:97 440 TVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQ--ERSNNKESE 492 (492) T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc--ccccccccC Confidence 67777764 33322111100000000000000000000000000 000000011 No 120 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=98.25 E-value=1.2e-06 Score=53.06 Aligned_cols=225 Identities=11% Similarity=0.034 Sum_probs=114.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|+++... |. +..|.+.|+.+++. ..+ ++++.+... ..+| ....+|+..+|+++........||.+.+..+. T Consensus 112 y~~i~r~~~-G~--~~~L~pl~~~~v~~-~~~-~~~~~~~~~-~~~g-~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~ 184 (346) T protein:vir:10 112 YFEVVRNRL-GQ--VQRIESPLAKYVRK-GLE-AGQFYYVPQ-RFDH-QEHEFAKGSIYHLLEPDINQDIYGLPQYLSAL 184 (346) T ss_pred EEEEEEcCC-Cc--EEEEEEecCCceEE-EEc-CCeEEEEEE-ccCC-eEEEEecccEEEecCCCCCCCeeeccHHHHHH Confidence 778887543 33 56788888887753 333 344444332 2223 34678888888777665557789999999888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEe-ecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCce-eEEccC---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQ-GAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEAA-GGYIPH---- 153 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~-~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~~-~~v~p~---- 153 (355) .....-.....+-..+... | +.|-++ ...++.. +.+ ..+.+++.+....+ |+.. .+++.. T Consensus 185 ~si~l~~~a~~~~~~~~~N-G-~~~~~il~~~d~~l---~~e--------~~~~i~~~~~~~~g~~n~~~~~vl~~~~~~ 251 (346) T protein:vir:10 185 QSAWLNESATLFRRKYFLN-G-AHAGFVFYMSDASQ---KQE--------DVENIRQQLKQSKGVGNFKNLFVHAPNGKK 251 (346) T ss_pred HHHHHHHHHHHHHHHHHhc-c-CCCceEEEeCCCCC---CHH--------HHHHHHHHHHHhcCccccCceeEecCCCCc Confidence 8887777777777777653 3 344333 2222221 111 12233333333332 2222 233432 Q ss_pred -CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 -GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFT-GSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 154 -~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~-~~~~ad~~~i~~~ln~~li 230 (355) |+++.-++....-..|.+.-++-..+|+.+...+--.++ ..+++|+++-.+....++. .-+.-.++.|++ +|..| T Consensus 252 ~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~~~iee-~n~~L- 329 (346) T protein:vir:10 252 DGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKE-FNQWL- 329 (346) T ss_pred cceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhc- Confidence 344444443444456888888889999999887644332 1223344543333333222 223333344432 22212 Q ss_pred HHHHHhCCCCcccccEEEecCCCccHHHHHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLGKEQPVTAE 261 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~~d~~~~ae 261 (355) ..+ .++|...+ +....| T Consensus 330 ---------~~e---~i~F~~~~--ll~~~~ 346 (346) T protein:vir:10 330 ---------GQE---VIKFKPSK--LLQRTQ 346 (346) T ss_pred ---------ccc---eeeechhh--hcccCC Confidence 111 24443211 000000 No 121 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=98.23 E-value=2.3e-06 Score=51.46 Aligned_cols=229 Identities=11% Similarity=-0.018 Sum_probs=120.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++.... | .+..|.+.|+.++++ ..+|+...+..+ | ....++++.+|+++.-......||.+.+..+. T Consensus 109 y~~~~rn~~-G--~~~~L~~l~~~~v~~---~~d~~~~~~~~~---g-~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~ 178 (348) T protein:vir:26 109 AFVKIRSYL-K--NVIALEPLPMVHMRK---RKNGDFVQLLRN---N-EQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSI 178 (348) T ss_pred EEEEEEcCC-C--cEEEEEEecCceeEe---eecCcEEEEEec---C-eEEEEcCccEEEEcCCCCCCCcccccHHHHHH Confidence 777776443 3 366788888876643 455665444432 2 34578888888777544456778999988888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEee-cCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc-e-eEEc-----c Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQG-APLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA-A-GGYI-----P 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~-~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~-~-~~v~-----p 152 (355) .....-.....+-..|.. .| +.|-++- ..++..+ .+ ..+.+++.+....++.+ . .+++ + T Consensus 179 ~si~l~~~a~~~~~~~f~-NG-a~pg~Il~~~~~~ls---~e--------~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~ 245 (348) T protein:vir:26 179 QSSLLNRDATLFRRRYYL-NG-AHMGFIFYATDPNLS---EA--------DEKALKEKIASSKGIGNFRSMFVNIPNGKE 245 (348) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCCCCC---HH--------HHHHHHHHHHHhcCcccccceeEEcCCCCc Confidence 777666555555555554 33 3454332 2222221 11 22334444444332222 1 2333 4 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASF-FTGSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v-~~~~~~ad~~~i~~~ln~~li 230 (355) .|++++-++....-..|.+.-++-..+|+.+...+--.++ ...++|+++-.+-...+ ...-+.-.++.|++.||+.+. T Consensus 246 ~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~l~ 325 (348) T protein:vir:26 246 KGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDAVNNDPE 325 (348) T ss_pred cceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhC Confidence 4556665654554456888888888899998877643222 12233444433333333 334556666677777776331 Q ss_pred HHHHHhCCCCcccccEEEecCC-CccHHHHHHHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQL-GKEQPVTAEAI 263 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~-~~d~~~~ae~~ 263 (355) + +... +|.|+-. ..+... +.++ T Consensus 326 -------~-~~~~--~~~fdl~~~~e~~~-~~a~ 348 (348) T protein:vir:26 326 -------I-PDNL--KLKFNLNPGVESAN-GSAV 348 (348) T ss_pred -------C-CCcc--EEEEecCcccccch-hhcC Confidence 1 1222 3444321 111111 1111 No 122 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=98.22 E-value=2.5e-06 Score=51.31 Aligned_cols=289 Identities=9% Similarity=-0.018 Sum_probs=132.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccce-eeeeecCCCceE-----------------------EEeecCC----------C Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTI-SRFDVAPDGGLV-----------------------AIEQWGV----------F 46 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i-~~f~~~~~g~l~-----------------------~~~q~~~----------~ 46 (355) .++++|.-.+|.+.+.-+ +|... -.|.....+.+. .++.... . T Consensus 139 ~~~~~~~d~~g~~~~~~~---~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~ 215 (478) T protein:vir:10 139 EWVQPYVDEEGEFKTFRV---PAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDD 215 (478) T ss_pred EEEEEEecCCCeeEEEEE---cccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCeeecccccccc Confidence 777787655665443321 12111 111111112211 0110000 0 Q ss_pred CC------CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCcccc Q lcl|Aclame:pro 47 GK------ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIAR 118 (355) Q Consensus 47 g~------~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~ 118 (355) +. ...+.+..+ ++.|+ .|++|.|.+..+....=.-...+..++..++.|..|+.+.+|-.... T Consensus 216 ~~~~~~~~~~~~~~~~~vPvv~~~-----n~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~---- 286 (478) T protein:vir:10 216 HIQPHYYQGNKLMSWGRVPFIPFK-----NNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGED---- 286 (478) T ss_pred ccccceecccccccCCccceEEec-----cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccc---- Confidence 00 000111111 23232 47889999988666655556677888888898888777766542211 Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc--CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCc Q lcl|Aclame:pro 119 DTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP--HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKS 196 (355) Q Consensus 119 d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p--~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~ 196 (355) .. ....++.. ...+.++ +|.+++++........++..++.+.+.|.+.-.+..++.++-+ T Consensus 287 -~~--------------~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~- 348 (478) T protein:vir:10 287 -MK--------------DFMHNLKY--YKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFG- 348 (478) T ss_pred -cc--------------hhhhhhhh--cceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCccccc- Confidence 00 01111111 1223343 5678888877777788999999999999998776665543221 Q ss_pred cchhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccccEEEecCCCc-cHHHHHHHHHHHHhCC Q lcl|Aclame:pro 197 TGSYALGDTFASFF----TGSLNAVMKHIADVTQQHVVEDLVDQNWGP-EEPAPRLVPAQLGK-EQPVTAEAIRALVECG 270 (355) Q Consensus 197 ~GS~Al~~vh~~v~----~~~~~ad~~~i~~~ln~~li~~l~~lNf~~-~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G 270 (355) | +++.+..... ......-.+.+...|.+ ++..++.+.... ...-..+.|....+ +..+.++.+.+| .| T Consensus 349 -~--n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~-~~~li~~~~g~~~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g 422 (478) T protein:vir:10 349 -N--SPSGIALKFMYSNLDLKANKLKNKTLTALQE-LLQYIIDFYRLDVKVQDIEITFNFNVMVNELENSQIAMNS--TG 422 (478) T ss_pred -c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCcccccceEEecCCCCCCHHHHHHHHHHH--hC Confidence 1 1222222222 22333444555566643 666666654321 11234677765554 567888888887 46 Q ss_pred CcccchhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 271 AFTADPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 271 ~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) + ++ .+.+.+.++. +.+..+-+..........+... ... ...........+.. +++ T Consensus 423 ~-iS----~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~-~~~--~~~~~~~~~~~~~~-~~~ 478 (478) T protein:vir:10 423 L-LS----KETILSNHAWVEDPVAEMERIEQENIELNQQLP-DIE--EGLNGEQQRQSENN-QPE 478 (478) T ss_pred C-CC----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcc-ccc--cccCCCCCCCCCCC-CCC Confidence 4 33 4677788875 2222111111000000000000 000 00000000000000 000 No 123 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=98.18 E-value=3.1e-06 Score=50.81 Aligned_cols=220 Identities=12% Similarity=0.021 Sum_probs=113.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++.... | .+..|.+.|+.+++. ..+++..+... .+.....+++..+|+++.-...+..||.+.+..+. T Consensus 120 y~~~~rn~~-G--~~~~L~~l~~~~vr~---~~~~~~~~~~~---~~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~ 190 (350) T protein:vir:11 120 YLEQPRSRL-G--TRMPLQAPLAKYMRR---GTDLETFYQVR---SWKDEHEFEKGSVIQLREADINQEIYGVPEWFCAL 190 (350) T ss_pred EEEEEEcCC-C--CEEEEEEeCCceeEe---eecCCeEEEEe---eCCeEEEECcccEEEeCCCCCCCCcccccHHHHHH Confidence 677776543 3 366788888886643 34444333222 12345678888888777555456789999998888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeec-CCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCce---eEEcc---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGA-PLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAA---GGYIP---- 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~-~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~---~~v~p---- 152 (355) .....-.....+-..|.. .| +.|-++-. .++.. +++ ..+.+++......++.++ .+..| T Consensus 191 ~si~l~~~a~~~~~~~f~-NG-a~~~gil~~~~~~l---s~e--------~~~~l~~~~~~~~G~~N~~~~~v~~~~g~~ 257 (350) T protein:vir:11 191 QSALLNESATLFRRKYYN-NG-SHAGFILYMTDAAQ---NEE--------DIDALRTALKTAKGPGNFRNLFVYAPNGKK 257 (350) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCCCC---CHH--------HHHHHHHHHHHhcCccccCceeeecCCCCc Confidence 887776665555555554 33 34433322 22221 111 123344444433322221 23233 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASF-FTGSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v-~~~~~~ad~~~i~~~ln~~li 230 (355) .|++++-++.......|.+.-++-..+|+.+...+--.++ ...++|+++-.+-...+ ...-+.-.++.|++ +|+.|. T Consensus 258 ~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~ 336 (350) T protein:vir:11 258 EGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNEMIG 336 (350) T ss_pred cceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHhhcC Confidence 3456655555555556889889999999999887643222 12233445433333332 22333444444443 444332 Q ss_pred HHHHHhCCCCcccccEEEecCCC-ccH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLG-KEQ 256 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~-~d~ 256 (355) +..++ |.+.+ +.+ T Consensus 337 ~~~~~-------------F~~~~~~~l 350 (350) T protein:vir:11 337 EEVVR-------------FAQFDAPGL 350 (350) T ss_pred ccccc-------------cCcccccCC Confidence 22222 22111 111 No 124 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=98.16 E-value=3.3e-06 Score=50.60 Aligned_cols=295 Identities=9% Similarity=-0.063 Sum_probs=131.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceee-eeecCCCceEEE-eecCCCCCCc---------------------------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISR-FDVAPDGGLVAI-EQWGVFGKAT---------------------------- 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~-f~~~~~g~l~~~-~q~~~~g~~~---------------------------- 50 (355) .+++||.-.+|.+.+. ..+|+.+.- |.....++++.. +.+....... T Consensus 137 ~~~~v~~d~d~~~~i~---~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (472) T protein:vir:93 137 EWLHPYLDEEGEFKLF---RVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLE 213 (472) T ss_pred EEEEEEECCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEEeecceeEEEEecCeEEEEEEecCeeeeccccccc Confidence 7788886666654433 223332211 111112222111 0000000000 Q ss_pred ------eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 51 ------VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 51 ------~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) .+.+..+ ++.|. +|++|.|.+..+....=--...+..++..++.|..++.++++-.... .. T Consensus 214 ~~~~~~~~~~~~~vPvv~~~-----nn~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~~~~~-----~~- 282 (472) T protein:vir:93 214 NSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQE-----LP- 282 (472) T ss_pred ccccccccCCCCCcceEEec-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCccc-----ch- Confidence 0000111 12221 36789999987555444455567777888888777666665532211 00 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) .. ..++. ....+.++++.+++++....+...+..+++.+.+.|...-....++.++-++..|..+ T Consensus 283 ----------~~---~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~A 347 (472) T protein:vir:93 283 ----------EF---KRLLR--YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVA 347 (472) T ss_pred ----------hh---HHHHh--hccccccCCCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCchHHH Confidence 01 11121 1234567889999999877777889999999999998886666554433222111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHH Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW-GPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEK 280 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf-~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~ 280 (355) -+....-.......-.+.+...|. ++++.++.+.. .....--.+.|....+ +..+.++.+.++ .|+ ++ .+ T Consensus 348 l~~~~~~l~~ka~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~~~~~~~k~--~gi-is----~e 419 (472) T protein:vir:93 348 LEFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQS--MGI-VS----HE 419 (472) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEeCCCCCCCHHHHHHHHHHH--hcc-Cc----hH Confidence 111112222233444455556663 46666666542 2111122455665555 567788888887 465 32 35 Q ss_pred HHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 281 DLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 281 ~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.++. +.+..+-+.............. ..++..+........+..+.++ T Consensus 420 t~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~e 472 (472) T protein:vir:93 420 TVLENHPFVEDLQAELERIEQEQMEYNKQLP--NLDDGGADGAQQQERSNNKESE 472 (472) T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHhcc--CcCcccCCCCCCCCCCCcccCC Confidence 56666654 3322211110000000000000 0000000000000000011111 No 125 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=98.16 E-value=1.1e-07 Score=58.81 Aligned_cols=313 Identities=14% Similarity=0.120 Sum_probs=164.2 Q ss_pred CeEEEE----eeeCCEEEE-eeeeecCccceeeee-ecCCCc-e------EEEeecC-----------CCCCCceeeCCc Q lcl|Aclame:pro 1 MFEQVY----RIENGRARL-GKLAWRPPRTISRFD-VAPDGG-L------VAIEQWG-----------VFGKATVRIPVD 56 (355) Q Consensus 1 V~Eivw----~~~~g~~~~-~~l~~r~~~~i~~f~-~~~~g~-l------~~~~q~~-----------~~g~~~~~ip~~ 56 (355) +-|+-| .+..|.|+- .++. ||. +.++-| + .+++|.. ......+++|-+ T Consensus 171 f~~~kyvfp~~r~~g~~v~vid~~--------~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~~~~~~~~~~~r~i~LP~e 242 (525) T protein:vir:10 171 FNNLKYVFPYGRAKGKMVAVIDLQ--------WFDEMSELERKLTFENLSPLITENKYKKWKEYNGENEDALRYIMLPIS 242 (525) T ss_pred hhhhhhhccccccCCceEEEEehH--------HhhhhhHHHHHHHHHhhchhhhhhhhhHHhhcccccchhheeeecccc Confidence 334433 233444432 2222 221 111111 0 0222210 011234689999 Q ss_pred cEEEEecCCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 57 RLVVFVNEREGANWL-GQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGL 135 (355) Q Consensus 57 k~i~~~~~~~~~~p~-G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~ 135 (355) +.++.+...-+-||- |.|+.-+.+.....|+..-......+.|...++.+++.-...+. +-..++++-+..+.-++ T Consensus 243 ~t~~lr~~tl~rnqrlG~s~vtp~l~dI~hk~klrd~EqsIA~kii~a~avLk~gg~~gn---~mk~p~~~kqkil~gVk 319 (525) T protein:vir:10 243 KTLVARIHTLSRNQRLGIPYGTQTLFDIQHKQKLRDLEQSIADKIIKAMAVLKFRGKDDN---DSKVKESAKRKVLAGVK 319 (525) T ss_pred eeEEeeecccccCcccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeccccCc---cccCchHHHHHHHHHHH Confidence 999999887777777 88999999999999998888888889998888888764433222 33444555555566666 Q ss_pred HHHHH-Hh--cCCceeEEccCCceEEEeccCC--CcccHHHHHHHHHHHHHHHH-hhhhhccccCCccchhhhHHHHHHH Q lcl|Aclame:pro 136 QLAKE-FR--AGEAAGGYIPHGANFTLTGVQG--KLPEMDGPIRYHDEQIARAV-LAHFLTLGGDKSTGSYALGDTFASF 209 (355) Q Consensus 136 ~~~~~-~~--~G~~~~~v~p~~~~ie~~~~~g--~~~~~~~~i~~~d~~Isk~i-lgqtlt~~~~~~~GS~Al~~vh~~v 209 (355) .++.- +. +| -+++.+|.=.+|+|-+.+. .+.+-. -.+..+.-|..+. +.+.|+++ .||.||.+.+..++ T Consensus 320 ~aleK~~kdK~G-i~vi~~Pdfa~~efp~ik~~~~glDg~-K~d~I~~DI~~A~GlS~sL~nG---dggNyAtaslnld~ 394 (525) T protein:vir:10 320 RALEKGVKDKNG-IACIAMPDFATFEFPEIKNGDKTLDPK-KYDSIDNDITNATGISQVLTNG---TKGNYASAKLNLDV 394 (525) T ss_pred HHHhcccccccC-eEEEeccceeecccccccCcccCCCch-hhhhhhhhhhhhhccceeeecC---CCCceeeeeeeHHH Confidence 66654 32 22 3445579999999987764 233322 3466677776664 33667652 56899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEe--cCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHh Q lcl|Aclame:pro 210 FTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVP--AQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARY 286 (355) Q Consensus 210 ~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~--~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~ 286 (355) |-..+---.+.|+++-| +|+.|+ |+.+. -..+.| +...+ +.++..+.+=+|-+.|+.. .++.+.. T Consensus 395 fykkigVm~e~Iee~y~-kL~d~V----l~~~k-~~nyifnydkd~pi~~kkk~d~LIkL~d~g~s~------k~vldl~ 462 (525) T protein:vir:10 395 FYKKIGVMLEIIEEIYN-QLIDII----LGEEK-GCNYIFQYNKDTPIEREKKLDTLIKLEAQGYSA------KYVLDIL 462 (525) T ss_pred HHHHHHHHHHHHHHHHH-HHHhhh----cCccc-CcceEEecCCCchhhhhhhhhhhhhhhccchhh------hhhhhhh Confidence 98888888888886665 477766 44332 223444 44333 3355566666777777643 3455555 Q ss_pred CCCCCCCccccccc-----cccccCCccc--cccc-cccccccCCcccCccccchhHHHHHhHh Q lcl|Aclame:pro 287 GLPAPAERDDGADA-----AAAKAAGRRR--AKRL-PGQRQGAALPSRSPRADPPRRRGPLRRR 342 (355) Q Consensus 287 glp~~~~~~~~~~~-----~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (355) |+.....-|+..-+ ......++.. .-++ .+.-.+.+. .......+..++...+-- T Consensus 463 gis~e~y~E~s~yEtE~lkl~EKi~pp~~~~v~SGk~~n~iG~P~-~dd~~~~dati~s~~~~~ 525 (525) T protein:vir:10 463 GISSEEYFEESIYEIEKLKLREKIMPPLNTNVLSGKDGNDIGSPK-LDDSDSSDATIESKERGV 525 (525) T ss_pred ccCcchHHHHHHHHHHHHHHhhhccccccceeeeccccccccCCc-cCCCcchhhhhhhhhcCC Confidence 55432222211100 0011111000 0011 011111000 011111111111111100 No 126 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=98.16 E-value=3.4e-06 Score=50.56 Aligned_cols=302 Identities=11% Similarity=-0.024 Sum_probs=123.0 Q ss_pred CeEEEEeeeCCEEEE-----------------eeeeecCccceeeeeecCCCceE---EEeecCCCCCCceeeCCccEEE Q lcl|Aclame:pro 1 MFEQVYRIENGRARL-----------------GKLAWRPPRTISRFDVAPDGGLV---AIEQWGVFGKATVRIPVDRLVV 60 (355) Q Consensus 1 V~Eivw~~~~g~~~~-----------------~~l~~r~~~~i~~f~~~~~g~l~---~~~q~~~~g~~~~~ip~~k~i~ 60 (355) ++ .+|....+.... ..+...-+..+.+|.....+.+. ......+.+.. .+| ++. T Consensus 162 ~~-~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g--~vP---vv~ 235 (499) T protein:vir:10 162 TV-VVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFG--AVP---IIE 235 (499) T ss_pred eE-EEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCC--ccc---eEE Confidence 11 122111111000 01111111112222211111000 00000011111 122 243 Q ss_pred EecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 61 FVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKE 140 (355) Q Consensus 61 ~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~ 140 (355) |. .|..|.|.+..+-...=--...+..++..++.|..|+.+++|...... .+ . .. . T Consensus 236 ~~-----n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~--~~--~-----------~~----~ 291 (499) T protein:vir:10 236 FR-----NNEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDD--KD--D-----------IQ----R 291 (499) T ss_pred ec-----CCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccc--cc--h-----------hh----h Confidence 43 356788888876666555556778888899988888877776432211 10 0 00 1 Q ss_pred HhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 141 FRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKH 220 (355) Q Consensus 141 ~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~ 220 (355) +..|.-...-.+.+.++++++...+...++..++.+.+.|...--...++.+.-++..|.-.-+....-....+..-.+. T Consensus 292 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~k~~~k~~~ 371 (499) T protein:vir:10 292 LKRGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKFMGNVSGEAMKFKLFGLENLLSIKQRY 371 (499) T ss_pred hhhcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhhcccchHHHHHHHHHHHHHHHHHHHHH Confidence 11111111113466778899877777789999999999998865555554332211111111111222222334444556 Q ss_pred HHHHHHHHHHHHHHHh-CC-CCc--ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCC-CCCCCc Q lcl|Aclame:pro 221 IADVTQQHVVEDLVDQ-NW-GPE--EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGL-PAPAER 294 (355) Q Consensus 221 i~~~ln~~li~~l~~l-Nf-~~~--~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~gl-p~~~~~ 294 (355) +...++ ++++.++.+ |. +.. .....+.|....+ +..+.++.+.+| .|+ ++ .+.+.+.++. +.+..+ T Consensus 372 ~~~~l~-~~~~li~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~-iS----~et~~~~l~~v~d~~~E 443 (499) T protein:vir:10 372 FFDGLR-RRLKLIQTIVNIKGANDDASGCKISLVANIPSNLSDVVNNVKNA--DGI-IP----RKYTYSWLPDVDNPQDV 443 (499) T ss_pred HHHHHH-HHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHH--hcc-CC----hHHHHHhCCCCCCHHHH Confidence 666664 366666654 21 111 1123677765554 567888888888 454 33 3556666644 222211 Q ss_pred ccccc-ccc-------cccCCccccccccccccccCCcccCccccchhHHHHHhH--hhhch Q lcl|Aclame:pro 295 DDGAD-AAA-------AKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRR--RPRHP 346 (355) Q Consensus 295 ~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 346 (355) -+... +.. .......+...+.... ...+++.+.......+. ++++. T Consensus 444 ~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 499 (499) T protein:vir:10 444 IDEMNQQDAETIKKNQEALRGQDPDRLELEDK------QDDSSENDKEAGSNHNQSHRTRAV 499 (499) T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC------CcccCCCCCCCccccccCCCCCCC Confidence 00000 000 0000000000000000 00111111111000000 01111 No 127 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=98.15 E-value=3.5e-06 Score=50.47 Aligned_cols=289 Identities=10% Similarity=-0.050 Sum_probs=131.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceEE-----------------------EeecCCCCCC------ Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLVA-----------------------IEQWGVFGKA------ 49 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~~-----------------------~~q~~~~g~~------ 49 (355) +++++|.-++|.+.+. +.+|+.+. ..+++ .++++. +++.+..... T Consensus 140 ~~~~~~~d~~~~~~i~---~~~p~~~~-~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~ 215 (474) T protein:vir:97 140 DWLQVYINENGEMKLF---RVPAEQAI-PIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGA 215 (474) T ss_pred eEEEEEecCCCeeEEE---EEcccceE-EEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCc Confidence 8888887666654433 22233221 11221 122211 1111100000 Q ss_pred ------ceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchh Q lcl|Aclame:pro 50 ------TVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTA 121 (355) Q Consensus 50 ------~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~ 121 (355) ..+.+..+ ++.| ..|++|.|.+..+....=--...+..++..++.|..|+.++++-.+... . T Consensus 216 ~~~~~~~~~~~~g~vPvv~~-----~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~--~--- 285 (474) T protein:vir:97 216 NHVQSHFSNGNWGRVPFIAF-----KNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDL--E--- 285 (474) T ss_pred CcccccccccCCCccceEEe-----cCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccc--h--- Confidence 00011111 1222 2478899999886555545566778888889988888777766432110 0 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhh Q lcl|Aclame:pro 122 RAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYA 201 (355) Q Consensus 122 ~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~A 201 (355) ....++. ....+.++.+.+++++....+...++..++.+.+.|...-.+..++.++-++. T Consensus 286 --------------~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n---- 345 (474) T protein:vir:97 286 --------------EFMRGLK--YYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFGSA---- 345 (474) T ss_pred --------------hhhhhhh--ccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccccc---- Confidence 1111221 23456778888999998777778899999999999988866665544332211 Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 202 LGDTFASF----FTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEE-PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTAD 275 (355) Q Consensus 202 l~~vh~~v----~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~-~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~ 275 (355) ++.+.... .......-.+.+...|. +++..++.+.....+ .--.+.|....+ +..+.++. ++.+|+.. T Consensus 346 ~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a~~---~~~~g~iS-- 419 (474) T protein:vir:97 346 PSGIALKFLYGNLDLKANKLKNKATVAIQ-ELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQSQI---IAQSQYLS-- 419 (474) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEeccCcccCHHHHHHH---HHHcCCCC-- Confidence 12222222 22223333445555554 366666665422211 112455554444 34444544 55567532 Q ss_pred hhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 276 PELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 276 ~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.+.++. +.+..+-+.............+ ...............+..+..+ T Consensus 420 ---~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:97 420 ---RETLVKSSPLVDDYKAELERIEQEQMEYNKQLP--NLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred ---HHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcc--ccCCCCCCCcccCCCCcccccC Confidence 4567777754 3322211111100000000000 0000000000000011111111 No 128 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=98.15 E-value=3.5e-06 Score=50.47 Aligned_cols=289 Identities=10% Similarity=-0.050 Sum_probs=131.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceEE-----------------------EeecCCCCCC------ Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLVA-----------------------IEQWGVFGKA------ 49 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~~-----------------------~~q~~~~g~~------ 49 (355) +++++|.-++|.+.+. +.+|+.+. ..+++ .++++. +++.+..... T Consensus 140 ~~~~~~~d~~~~~~i~---~~~p~~~~-~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~ 215 (474) T protein:vir:94 140 DWLQVYINENGEMKLF---RVPAEQAI-PIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGA 215 (474) T ss_pred eEEEEEecCCCeeEEE---EEcccceE-EEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCc Confidence 8888887666654433 22233221 11221 122211 1111100000 Q ss_pred ------ceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchh Q lcl|Aclame:pro 50 ------TVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTA 121 (355) Q Consensus 50 ------~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~ 121 (355) ..+.+..+ ++.| ..|++|.|.+..+....=--...+..++..++.|..|+.++++-.+... . T Consensus 216 ~~~~~~~~~~~~g~vPvv~~-----~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~--~--- 285 (474) T protein:vir:94 216 NHVQSHFSNGNWGRVPFIAF-----KNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDL--E--- 285 (474) T ss_pred CcccccccccCCCccceEEe-----cCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccc--h--- Confidence 00011111 1222 2478899999886555545566778888889988888777766432110 0 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhh Q lcl|Aclame:pro 122 RAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYA 201 (355) Q Consensus 122 ~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~A 201 (355) ....++. ....+.++.+.+++++....+...++..++.+.+.|...-.+..++.++-++. T Consensus 286 --------------~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n---- 345 (474) T protein:vir:94 286 --------------EFMRGLK--YYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFGSA---- 345 (474) T ss_pred --------------hhhhhhh--ccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccccc---- Confidence 1111221 23456778888999998777778899999999999988866665544332211 Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 202 LGDTFASF----FTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEE-PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTAD 275 (355) Q Consensus 202 l~~vh~~v----~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~-~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~ 275 (355) ++.+.... .......-.+.+...|. +++..++.+.....+ .--.+.|....+ +..+.++. ++.+|+.. T Consensus 346 ~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a~~---~~~~g~iS-- 419 (474) T protein:vir:94 346 PSGIALKFLYGNLDLKANKLKNKATVAIQ-ELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQSQI---IAQSQYLS-- 419 (474) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEeccCcccCHHHHHHH---HHHcCCCC-- Confidence 12222222 22223333445555554 366666665422211 112455554444 34444544 55567532 Q ss_pred hhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 276 PELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 276 ~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.+.++. +.+..+-+.............+ ...............+..+..+ T Consensus 420 ---~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:94 420 ---RETLVKSSPLVDDYKAELERIEQEQMEYNKQLP--NLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred ---HHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcc--ccCCCCCCCcccCCCCcccccC Confidence 4567777754 3322211111100000000000 0000000000000011111111 No 129 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=98.11 E-value=3.6e-06 Score=50.43 Aligned_cols=311 Identities=10% Similarity=-0.044 Sum_probs=130.8 Q ss_pred CeEEEEeeeCCEEEEe-----eeee--cCc---c--c-eeeeee----------------cCCCceEEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLG-----KLAW--RPP---R--T-ISRFDV----------------APDGGLVAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~-----~l~~--r~~---~--~-i~~f~~----------------~~~g~l~~~~q~~~~g~--- 48 (355) +++++|.-.+|.+.+. .+.+ .+. . . +.+|.. =..+++..++..+..+. T Consensus 150 a~~~vy~ded~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~ 229 (511) T protein:vir:99 150 AYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLT 229 (511) T ss_pred eEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCcccccc Confidence 7777776555543322 1111 010 0 0 111111 01112222222111100 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.|..+ ++.|. .|+.|.|.+..+-...=--...+..++..++.|..++.+++|........ ... T Consensus 230 ~~~~~~~~~~~g~vPvv~~~-----nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~--~~~ 302 (511) T protein:vir:99 230 PRENGFESHSFERMPITEFS-----NNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVE--VRK 302 (511) T ss_pred ccccccccCCCCccceEEec-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccCchh--hcc Confidence 011111111 23333 36778999887766655556677888888898888877777643221110 000 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) .. ...+..+ .........+.-...+.++++++...+...++..++.+.+.|.+.-....++.++-++..|... T Consensus 303 ~~------~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~gn~Sg~A 375 (511) T protein:vir:99 303 QK------EANVLFL-EPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEA 375 (511) T ss_pred cc------cccceec-ccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHH Confidence 00 0000000 0000001111223456789999877777789999999999998877777665433221111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCc--c--cccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ---NWGPE--E--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l---Nf~~~--~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) -.....-.......-.+.+...|++ +++.++.+ +.... . .-.++.|....+ +..+.++.+.+|. |+ ++ T Consensus 376 lk~~~~~l~~ka~~k~~~~~~~l~~-~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~--Gi-iS 451 (511) T protein:vir:99 376 MKYKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 451 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC Confidence 1111122222333344555666643 55554443 22111 1 123677765544 5677888888874 64 33 Q ss_pred chhhHHHHHHHhCC-CCCCCcccccccc----ccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGADAA----AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.+.++. +.+..+-+..... .+....+..... .+.....+.+......++.+ T Consensus 452 ----~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 452 ----QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKNMYQDP-RNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred ----HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccC-CCCCCCCCCCCCcCcccccC Confidence 4566677644 3222111100000 000000000000 00000000000000111111 No 130 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=98.11 E-value=3.1e-06 Score=50.79 Aligned_cols=227 Identities=12% Similarity=0.000 Sum_probs=118.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce-EEEeecC-CCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL-VAIEQWG-VFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l-~~~~q~~-~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) ..|++....+ .+..|.+.|+.++++ ..+++. ..++.+. ..+.....+++..+|+++.-...+..||.+-+.. T Consensus 107 y~~i~rn~~G---~~~~L~pl~~~~vr~---~~d~~~~~~~~~~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~ 180 (345) T protein:vir:37 107 GLLKVRNGFG---QVVRLVPLSSLYLRV---HKDGGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVG 180 (345) T ss_pred EEEEEECCCC---CEEEEEEecCceeEE---eecCCeeEEEeeeeeccCceEEEEccccEEEEcCCCCCCCcccchHHHH Confidence 7788775433 356788888876643 233332 2222211 1223445688888888775444567789988877 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEee-cCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc---eeEEcc-- Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQG-APLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA---AGGYIP-- 152 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~-~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~---~~~v~p-- 152 (355) +......-.....+-..|.. .| ++|-++- ..++..+.+ ..+.+++.+++..+|.+ ..+.+| T Consensus 181 a~~si~l~~~a~~~~~~~f~-NG-a~~~~Il~~t~~~l~~e-----------~~~~lk~~~~~~~g~~n~~~~~i~~~~g 247 (345) T protein:vir:37 181 GIQSALLNSDATVFRRRYFS-NG-AHMGFILYSTDPDLTEE-----------MEEEIARKISESKGVGNFRSMFVNIAGG 247 (345) T ss_pred HHHHHHHHHHHHHHHHHHHh-cc-CCcceEEEeCCCCCCHH-----------HHHHHHHHHHHhcCccccCceeEecCCC Confidence 77766665555555555554 33 3453332 222222111 12334444444443322 223444 Q ss_pred --CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 --HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFT-GSLNAVMKHIADVTQQH 228 (355) Q Consensus 153 --~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~-~~~~ad~~~i~~~ln~~ 228 (355) +|+++.-++.......|.++-+.-..+|+.+...+--.++ .+.++|+++-.+-+..++. .-+.-.++.|++.+|+ T Consensus 248 ~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~- 326 (345) T protein:vir:37 248 HPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQ- 326 (345) T ss_pred CccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh- Confidence 3456665655555556888888889999999877643222 1223444554443344332 3345566666666664 Q ss_pred HHHHHHHhCCCCcccccEEEecCCCccHHH Q lcl|Aclame:pro 229 VVEDLVDQNWGPEEPAPRLVPAQLGKEQPV 258 (355) Q Consensus 229 li~~l~~lNf~~~~~~P~~~~~~~~~d~~~ 258 (355) + .+ ++ .-..+.|++.+ +.. T Consensus 327 ~----~e--~~---~~~~i~F~~~~--l~k 345 (345) T protein:vir:37 327 D----PE--IK---NLLKIKFREQN--FAK 345 (345) T ss_pred h----hc--cC---CcceEEECchh--hcC Confidence 1 11 11 12356665421 111 No 131 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.11 E-value=4.4e-06 Score=49.93 Aligned_cols=315 Identities=15% Similarity=0.071 Sum_probs=136.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee-------------eeeecCCCceEEE-eecCCCCC---------------Cce Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS-------------RFDVAPDGGLVAI-EQWGVFGK---------------ATV 51 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~-------------~f~~~~~g~l~~~-~q~~~~g~---------------~~~ 51 (355) +.-++|....|..++-+|..+++..|. =+++|+.|+.+.+ -.....|. ... T Consensus 156 ~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~ 235 (553) T protein:vir:63 156 LATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSK 235 (553) T ss_pred EEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeecccc Confidence 556778665543344445555554443 2566777764432 22211111 112 Q ss_pred eeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec-CCCCccc---------cc-- Q lcl|Aclame:pro 52 RIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGA-PLPEAIA---------RD-- 119 (355) Q Consensus 52 ~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~-~~~~~~~---------~d-- 119 (355) .+|...+||+-...+.+..-|.++|.++.....-........+.-.-. ..-+...+.. .++.... .+ T Consensus 236 ~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i-~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~ 314 (553) T protein:vir:63 236 PWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVI-NASYAAAIESELPPEFIHSQMSGGSPNADMV 314 (553) T ss_pred ccChhHheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHH-hhhheeeeecCCChhhhhhhccccccccccc Confidence 466666554444456888999999998887764443333333322221 1122222211 1110000 00 Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhh--hhccccCC Q lcl|Aclame:pro 120 --TARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDK 195 (355) Q Consensus 120 --~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~ 195 (355) ......... ...-......| +......++.|.+|++.+++..+.+|..|.+..-+.|+..+... .||.+- T Consensus 315 ~~~~~~~~~~~--~~~~~~~~~~l--~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~-- 388 (553) T protein:vir:63 315 GIFGKYMDALK--AYVGGANNIQI--DGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDF-- 388 (553) T ss_pred ccccccccccc--cccccccceee--cCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhc-- Confidence 000000000 00000011122 23457788999999999988788899999999999999997554 354432 Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC----CCCcc------------ccc--EEEecCCCc Q lcl|Aclame:pro 196 STGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD---QN----WGPEE------------PAP--RLVPAQLGK 254 (355) Q Consensus 196 ~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~---lN----f~~~~------------~~P--~~~~~~~~~ 254 (355) ...||+.+-.-..-+...++....++...+-+-+..++++ ++ .+... .+- .|....-.. T Consensus 389 s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~ 468 (553) T protein:vir:63 389 SKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQ 468 (553) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccc Confidence 2245654433333344444455555555444444443322 11 11100 000 122111111 Q ss_pred -cHHHHHHHHHHHHhCCCcccchh----------------hHHHHHHHhCCCCCCCccccccccccccCCcccccccccc Q lcl|Aclame:pro 255 -EQPVTAEAIRALVECGAFTADPE----------------LEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQ 317 (355) Q Consensus 255 -d~~~~ae~~~~l~~~G~~~~~~~----------------~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (355) |-.+-+++....+++|+...... .+....+++||+.+.+.. .... ....+..++ T Consensus 469 iDP~Ke~~A~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~------~~~~-~~~~~~~~~-- 539 (553) T protein:vir:63 469 IDQLKETQAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAK------RSLG-DGRDAATGI-- 539 (553) T ss_pred cChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCc------cccC-CCcccCCCC-- Confidence 33344556666777776542110 012233445554321100 0000 000000000 Q ss_pred ccccCCcccCccccchhHHHH Q lcl|Aclame:pro 318 RQGAALPSRSPRADPPRRRGP 338 (355) Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~ 338 (355) +..+++.+..-.+. T Consensus 540 -------~~~~~~~~~~~~~e 553 (553) T protein:vir:63 540 -------AEDPAAAQTSQQGE 553 (553) T ss_pred -------CCCCCCCCcccccC Confidence 11111111111111 No 132 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=98.09 E-value=5e-06 Score=49.66 Aligned_cols=312 Identities=10% Similarity=-0.060 Sum_probs=131.7 Q ss_pred CeEEEEeeeCCEEEEeeeee-------cC-----ccc-eeeeee----------------cCCCceEEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAW-------RP-----PRT-ISRFDV----------------APDGGLVAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~-------r~-----~~~-i~~f~~----------------~~~g~l~~~~q~~~~g~--- 48 (355) .++++|.-++|.+.+..+.+ -+ +.. +.+|.. =..+++..++..+..+. T Consensus 150 ay~~vy~ded~~~~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~ 229 (512) T protein:vir:97 150 AYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLT 229 (512) T ss_pred EEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccc Confidence 77777765555433332111 00 000 001111 01112222222111100 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.|..+ ++.|. .|+.|.|.+..+-..-=--...+..++..++.|..++.+++|....... + T Consensus 230 ~~~~~~~~~~~g~vPvv~~~-----nn~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~--~--- 299 (512) T protein:vir:97 230 PRENGFESHSFERMPITEFS-----NNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPV--E--- 299 (512) T ss_pred ccccccccccCcccceEeec-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCch--h--- Confidence 011122222 23332 3677899888876665555667788888899988888777764332111 0 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) ...... .....+..+...+.....-...+.+++++........++.+++++.+.|.+.-....++.++-++..|.-. T Consensus 300 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~gn~Sg~A 376 (512) T protein:vir:97 300 VRKQKE---ANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEA 376 (512) T ss_pred hhhhhh---cccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHH Confidence 000000 00000000000011111223456788888877777789999999999998887666665433222112111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCC---cc--cccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ-N-WGP---EE--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l-N-f~~---~~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) -.....-.......-.+.+...|.+ +++.++.+ + .+. .. .-.++.|....+ +..+.++.+.+|. |+ ++ T Consensus 377 l~~~~~~l~~ka~~k~~~f~~~l~~-~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl~--gi-iS 452 (512) T protein:vir:97 377 MKYKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 452 (512) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-Cc Confidence 1111122222333444555556643 55555443 1 111 11 123566765444 5677788888884 65 33 Q ss_pred chhhHHHHHHHhCC-CCCCCcccccccc-c---cccCCccccccccccccccCCcccCccccchhHHHH Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGADAA-A---AKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGP 338 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355) .+.+.+.++. +.+..+-+..... . +....+.......... ....+..+...-+.. T Consensus 453 ----~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 512 (512) T protein:vir:97 453 ----QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDIND-----DEQDDDTKDTVDKKE 512 (512) T ss_pred ----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC-----CCCCCCccccccccC Confidence 3567777764 3322211111100 0 0000001000000000 000011111110011 No 133 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=98.07 E-value=5.5e-06 Score=49.42 Aligned_cols=292 Identities=11% Similarity=-0.009 Sum_probs=130.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccce-eeeeecCCCceEE-EeecCCCCCCce--------------------------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTI-SRFDVAPDGGLVA-IEQWGVFGKATV--------------------------- 51 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i-~~f~~~~~g~l~~-~~q~~~~g~~~~--------------------------- 51 (355) ++++||--.+|.+.+.- .+|+.+ -.|.....+++.. ++.+...+.... T Consensus 139 ~~~~v~~d~~~~~~~~~---~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~ 215 (478) T protein:vir:10 139 EWVQPYVDEEGEFKTFR---VPAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSED 215 (478) T ss_pred EEEEEEecCCCceEEEE---EcccceEEEEcCCCCCceEEEEEEEeeeCceEEEEEeCCcEEEEEecCCeeecccccccc Confidence 88888865566544332 222222 1111111233221 111111111000 Q ss_pred -----------eeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCcccc Q lcl|Aclame:pro 52 -----------RIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIAR 118 (355) Q Consensus 52 -----------~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~ 118 (355) +.+..+ ++.|. .|+.|.|.+..+....=--...+..++..++.|..++.++++-.+.. T Consensus 216 ~~~~~~~~~~~~~~~g~vPvv~~~-----n~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~---- 286 (478) T protein:vir:10 216 HIQPHYYQGNKLMSWGRVPFIPFK-----NNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGED---- 286 (478) T ss_pred ccccceecccccccCCcceEEEec-----cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCccc---- Confidence 111111 12222 36678898887555544445567778888888888877776543211 Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCceeEEc--cCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCc Q lcl|Aclame:pro 119 DTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYI--PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKS 196 (355) Q Consensus 119 d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~--p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~ 196 (355) .. ....++. + ..++.+ .++.+++++........++..++.+.+.|...--+..++.++-++ T Consensus 287 -~~--------------~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~ 349 (478) T protein:vir:10 287 -MK--------------DFMHNLK-Y-YKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGN 349 (478) T ss_pred -cc--------------chhhhhh-h-CceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCcccccc Confidence 00 0111121 1 123333 356789999877777889999999999998887666555433222 Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 197 TGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEE-PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 197 ~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~-~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) ..|...-+....-....+..-.+.+...|. +++..++.+...... .-..+.|....+ +..+.++.+.++ .|+ ++ T Consensus 350 n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~-iS 425 (478) T protein:vir:10 350 SPSGIALKFMYSNLDLKANKLKNKTLTALQ-ELLQYIIDFYRLDVRVQDIEITFNFNVMVNELENSQIAMNS--TGL-LS 425 (478) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccccceEEeCCCCCCCHHHHHHHHHHH--hCC-CC Confidence 122111111112222233444455566664 366666555432211 123566765444 567777877776 464 32 Q ss_pred chhhHHHHHHHhCC-CCCCCccccc-cccccccCCccccccccccccccCCcccCcccc Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGA-DAAAAKAAGRRRAKRLPGQRQGAALPSRSPRAD 331 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (355) .+.+.+.++. ..+..+-+.. .+....... ......+........+....++ T Consensus 426 ----~et~i~~~~~v~d~~~E~~ri~~E~~~~~~~--~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 426 ----KETILGNHSWVQDPVAEMERIEQENIELNQQ--LPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred ----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh--ccccCCCCcccccccCcCCCCC Confidence 4556666654 3322110000 000000000 0000000000000011111111 No 134 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.04 E-value=6.3e-06 Score=49.08 Aligned_cols=310 Identities=14% Similarity=0.070 Sum_probs=133.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee-------------eeeecCCCceEEE--eecCCCCC---CceeeC------Cc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS-------------RFDVAPDGGLVAI--EQWGVFGK---ATVRIP------VD 56 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~-------------~f~~~~~g~l~~~--~q~~~~g~---~~~~ip------~~ 56 (355) +.-++|..++|.-++-+|..+++..|. =+++|+.|+.+.+ .+..+.+. ....+| .. T Consensus 149 ~~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~ 228 (530) T protein:vir:38 149 CVQATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRP 228 (530) T ss_pred EEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChh Confidence 555667666665444445555544443 2566777774422 22222221 222233 33 Q ss_pred cEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eecCCC----------CccccchhhHHH Q lcl|Aclame:pro 57 RLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIY-QGAPLP----------EAIARDTARAEQ 125 (355) Q Consensus 57 k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~-~~~~~~----------~~~~~d~~~~e~ 125 (355) .+||+-...+.+..-|.+.|.++.....-........+.-.-. ..-+... +...+. .... +...... T Consensus 229 ~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i-~A~~a~fi~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 306 (530) T protein:vir:38 229 SFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIV-KAMYAATIESELDTQSAMDFILGADNKE-QQSKLTG 306 (530) T ss_pred HeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHH-hhhheeeeeccCCccccccccccCCccc-ccccccc Confidence 4444334445789999999998877754433333322222211 1111211 111111 0000 0000000 Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhh--hhccccCCccchhhhH Q lcl|Aclame:pro 126 WLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDKSTGSYALG 203 (355) Q Consensus 126 ~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~~~GS~Al~ 203 (355) ...............| +......++.|.+|+++++...+..|..|.+..-+.|+.++... .||.+- .+.||+.+ T Consensus 307 ~~~~~~~~~~~~~~~l--~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~--s~~nYSS~ 382 (530) T protein:vir:38 307 WLGEMAAYYSAAPVRL--GGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNY--SQMSYSTA 382 (530) T ss_pred cchhhhhcccccceec--cCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHHH Confidence 0000000000000112 33456788999999999988888999999999999999997554 244332 23466655 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCC----CCcc---------ccc--EEEecCCCc-cHHHHHHHHH Q lcl|Aclame:pro 204 DTFASFFTGSLNAVMKHIADVTQQHVVEDLVD---QNW----GPEE---------PAP--RLVPAQLGK-EQPVTAEAIR 264 (355) Q Consensus 204 ~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~---lNf----~~~~---------~~P--~~~~~~~~~-d~~~~ae~~~ 264 (355) -.-..-+...++.....+...+-+-+...+++ ++. +... .+. .|....-.. |-.+-+++.. T Consensus 383 R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~ 462 (530) T protein:vir:38 383 RASANESWAYFMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAV 462 (530) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHH Confidence 44444444455555555544443334443322 121 1000 011 222211111 3334455666 Q ss_pred HHHhCCCcccchh----------------hHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcc Q lcl|Aclame:pro 265 ALVECGAFTADPE----------------LEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPS 325 (355) Q Consensus 265 ~l~~~G~~~~~~~----------------~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (355) ..+++|+...... .+....+++||+.+..... .......+.+..+.++... + T Consensus 463 ~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~----~~~~~~~~~~~~~~d~~~~-----a 530 (530) T protein:vir:38 463 MLIEAGLSTYEKECAKRGDDYQEIFAQQVRESMERRAAGLNPPAWAAA----AFEAGVKKSNEEEQDGARA-----A 530 (530) T ss_pred HHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCccc----ccCCCCCCCCCCCCCCCCC-----C Confidence 6777776532110 0122234555543221100 0000000000000000000 0 No 135 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=98.02 E-value=7e-06 Score=48.85 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=112.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|+++...+ .+..|.+.|+.+++ ...+++..+.... +.....++++.+++++.-......||.+.+..+. T Consensus 109 y~~~~rn~~G---~~~~L~pl~~~~vr---~~~~~~~~~~~~~---~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~ 179 (340) T protein:vir:98 109 FLEQRHSVTG---QLIKLLTSPAKYTR---RGVDDSVFWFVEN---FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSAL 179 (340) T ss_pred EEEEEECCCC---cEEEEEEeCCceEE---EcccCcEEEEEec---CCeEEEEccccEEEEcCCCCCCCcccccHHHHHH Confidence 7788875433 36678888877553 3455554433321 2244678888888777544346789999988888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEe-ecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCc-eeEEc-----c Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQ-GAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEA-AGGYI-----P 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~-~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~-~~~v~-----p 152 (355) .....-.....+-..|.+ .| +.|-++ ...++..+ .+ ..+.+++.+++..+ |+. ..+++ + T Consensus 180 ~si~l~~aa~~~~~~~f~-NG-a~pg~il~~~~~~ls---~e--------~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~ 246 (340) T protein:vir:98 180 NSAWLNESATLFRRKYYQ-NG-AHAGYIMYVTDPAQS---AT--------DVESLRDAMRNSKGLGNFKNLFFYSPNGKP 246 (340) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCCCCC---HH--------HHHHHHHHHHHhcCccccCceeEecCCCCc Confidence 777766655555555654 33 345332 22222211 11 22334444444321 211 12333 3 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFTG-SLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~~-~~~ad~~~i~~~ln~~li 230 (355) .|+++.-++....-..|.++-++-..+|+.+...+--.++ .+.++|+++-.+-...++.. -+.-.++.|++ +|..| T Consensus 247 ~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~iee-~n~~L- 324 (340) T protein:vir:98 247 DGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWL- 324 (340) T ss_pred cceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhcc- Confidence 4566666655555566888888889999999877643332 12233444433322222221 22223333332 23212 Q ss_pred HHHHHhCCCCcccccEEEecCCCccH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLGKEQ 256 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~~d~ 256 (355) ..+ ..+|........+ T Consensus 325 ---------~~e-~~rF~~~~l~~~d 340 (340) T protein:vir:98 325 ---------GME-VIRFKEYTLDNPE 340 (340) T ss_pred ---------ccc-ccccCccccccCC Confidence 111 2233211111111 No 136 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=98.01 E-value=7.1e-06 Score=48.80 Aligned_cols=231 Identities=10% Similarity=0.004 Sum_probs=114.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++.... |. +..|.+.|+.++.. .++++....... +.....+++..+|+.+.-...+..||.+.+..+. T Consensus 125 y~~~~r~~~-G~--~~~L~~l~~~~v~~---~~~~~~~~~~~~---~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~ 195 (368) T protein:vir:79 125 YLERRENVL-GG--TIRLDTPLAKYVRR---GLDLNTYFFVQN---WQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSAL 195 (368) T ss_pred EEEEEEcCC-CC--EEEEEEeCccccee---eccCCEEEEEec---CCeEEEEccccEEEecCCCCCCCcccccHHHHHH Confidence 777776543 32 66788888876642 334443332221 2245678888888777554456779999999888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEee-cCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCce--eEEc-----c Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQG-APLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAA--GGYI-----P 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~-~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~--~~v~-----p 152 (355) .....-.....+-..+.. .| +.|-++- ..++..+ .+ ..+.+++.+++..+..++ .+|+ + T Consensus 196 ~si~l~~aa~~~~~~~~~-NG-a~~~gil~~~~~~l~---~e--------~~~~lk~~~~~~~G~~N~g~~~vl~~~g~~ 262 (368) T protein:vir:79 196 NATWLNESATLFRRRYYK-NG-SHAGFILYMTDAAQK---QE--------DVDTLREAMKSAKGPGNFRNLFMYAPNGKK 262 (368) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEeCCCCCC---HH--------HHHHHHHHHHHhcCCcccCceeEecCCCCc Confidence 877776666665566654 33 3343332 2222111 11 223344444443322222 2333 3 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~li 230 (355) .|++++-++.+.....|.+.-++-.++|+.+...+-..++ .++++++++-.+-...++ ..-+.-.+..|++ +|..| T Consensus 263 ~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie~-ln~~l- 340 (368) T protein:vir:79 263 DGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLLA-INDWI- 340 (368) T ss_pred cceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhcc- Confidence 4566666655555566888889999999999887643332 112233344333222222 2223333333332 23211 Q ss_pred HHHHHhCCCCcccccEEEecCCC---ccHHHHHHHHHHHHhC Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLG---KEQPVTAEAIRALVEC 269 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~---~d~~~~ae~~~~l~~~ 269 (355) .. . .++|++.. .|.++.++.-.+ ++ T Consensus 341 ---------~~-e--~~rF~~~~l~~~D~~a~a~~~~r--sa 368 (368) T protein:vir:79 341 ---------GD-E--VVRFAPYALGGHDQPAAAPGGQR--SA 368 (368) T ss_pred ---------Cc-c--eeeechhHhhcccccccCCcccc--cC Confidence 11 1 23443211 122222221111 00 No 137 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=98.01 E-value=7.2e-06 Score=48.78 Aligned_cols=285 Identities=7% Similarity=-0.024 Sum_probs=133.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee----------------eeeec-CCCc-e-----------EEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS----------------RFDVA-PDGG-L-----------VAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~----------------~f~~~-~~g~-l-----------~~~~q~~~~g~--- 48 (355) +++++|.-++|++...-+ +|..+. +|... .++. . ..++..+.... T Consensus 136 ~~~~v~~d~~~~~~i~~~---~p~~~~~v~d~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~ 212 (479) T protein:vir:79 136 EWLHPYINRKGEFKYVII---PAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEF 212 (479) T ss_pred EEEEEEeCCCCceEEEEE---ccceeEEEEeCCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccc Confidence 788888666665443322 222221 11111 1111 1 01111000000 Q ss_pred ------------------CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEe Q lcl|Aclame:pro 49 ------------------ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQ 108 (355) Q Consensus 49 ------------------~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~ 108 (355) ...+.+..+ ++.| .+|++|.|.+..+....=--...+.+++..++.|..|+.+++ T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~-----~nn~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~ 287 (479) T protein:vir:79 213 LYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPF-----KNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK 287 (479) T ss_pred cccccccccccccccccccccccCCCcccEEEe-----cCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeee Confidence 000111111 1222 246788999987666655555677889999999988888877 Q ss_pred ecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 109 GAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHF 188 (355) Q Consensus 109 ~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqt 188 (355) +-.+... .+ ...+++. ...+.++.+.++++++...+...++..++.+.+.|...--++. T Consensus 288 g~~~~~~--~~-----------------~~~~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~ 346 (479) T protein:vir:79 288 EYPGTSL--QE-----------------FIDNIRY--YKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVN 346 (479) T ss_pred cCCcccc--cc-----------------chhhhhh--ccceecCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCccc Confidence 6422111 00 1112221 2345678889999998877777899999999999998877777 Q ss_pred hccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CC--cccccEEEecCCCc-cHHHHHHH Q lcl|Aclame:pro 189 LTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ-NW--GP--EEPAPRLVPAQLGK-EQPVTAEA 262 (355) Q Consensus 189 lt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l-Nf--~~--~~~~P~~~~~~~~~-d~~~~ae~ 262 (355) ++.++.+..+.-|+ .....-.......-.+.+...|. +++..++.+ |. +. ......+.|....+ +..+.++. T Consensus 347 ~~~~~~gn~Sg~Ai-~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~ 424 (479) T protein:vir:79 347 PESQNTGDKSGVAL-KFLYSLLDLKCSKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDM 424 (479) T ss_pred cccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHH Confidence 65533211111111 11111122233333344455553 355555433 22 11 11234677765544 56788888 Q ss_pred HHHHHhCCCcccchhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccC Q lcl|Aclame:pro 263 IRALVECGAFTADPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRS 327 (355) Q Consensus 263 ~~~l~~~G~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (355) +.+|. |+ ++ .+.+.+.++. +.+..+-+................. +. .......+ T Consensus 425 ~~kl~--g~-iS----~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~--~~--~~~~~~e~ 479 (479) T protein:vir:79 425 AAKST--GI-VS----DETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIP--NN--QDGVIDET 479 (479) T ss_pred HHHHh--cc-Cc----HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhccC--cc--cCCCcCcC Confidence 88874 64 32 4566777764 3222111111000000000000000 00 00111111 No 138 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.00 E-value=7.4e-06 Score=48.72 Aligned_cols=306 Identities=12% Similarity=0.007 Sum_probs=132.8 Q ss_pred CeEEEEeeeCCEE-----EEeeeeecCccc---------------eeeeeecCCCceE---EE-------eecCCCCC-- Q lcl|Aclame:pro 1 MFEQVYRIENGRA-----RLGKLAWRPPRT---------------ISRFDVAPDGGLV---AI-------EQWGVFGK-- 48 (355) Q Consensus 1 V~Eivw~~~~g~~-----~~~~l~~r~~~~---------------i~~f~~~~~g~l~---~~-------~q~~~~g~-- 48 (355) .+++||.-.++.. .+. |.+++|+. +.++..+.++... ++ .+....+. T Consensus 75 ay~~v~~~~~~~~~~~~~~~~-I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (434) T protein:vir:98 75 GYMLVGAHPTRTEDNGRPSPL-ITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGARL 153 (434) T ss_pred eEEEEecCCCcccccCCceeE-EEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeecccccc Confidence 7888885333211 111 33333332 2223222222211 00 00000000 Q ss_pred ----------------CceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCC Q lcl|Aclame:pro 49 ----------------ATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPL 112 (355) Q Consensus 49 ----------------~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~ 112 (355) ...++..--++.|.++...+. .|.|-+..+....=.=...+..++...|-|+.+..+++|... T Consensus 154 ~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~ 232 (434) T protein:vir:98 154 PWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIKGHKF 232 (434) T ss_pred ccccccceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCc Confidence 000111122445666655433 588888877665555555667778888888877777765432 Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCC-CcccHHHHHHHHHHHHHHHHhhhhhcc Q lcl|Aclame:pro 113 PEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTL 191 (355) Q Consensus 113 ~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~ 191 (355) ......... .. ...+ .+..+. ..+...++.+.++.+... ....|...++.+-.+|+...--+.-.. T Consensus 233 ~~~~~~~~~-~~--------~~~~---~~~~~~-~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~ 299 (434) T protein:vir:98 233 AKRTDPATG-MT--------VVDQ---PFVPSP-SAVWASEGENTQFGQLDATDLSGFLKEHASDVRDMLTISQTPTYLY 299 (434) T ss_pred ccccccccc-cc--------hhhh---hhhccc-cccccCCCCCceEEEecCcchHHHHHHHHHHHHHHhcccCCCHHHh Confidence 221111100 00 0001 111122 223344455666665432 334466666666566554432221111 Q ss_pred ccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cccEEEecCCCc-cHHHHHHHHHHHHhC Q lcl|Aclame:pro 192 GGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEE-PAPRLVPAQLGK-EQPVTAEAIRALVEC 269 (355) Q Consensus 192 ~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~-~~P~~~~~~~~~-d~~~~ae~~~~l~~~ 269 (355) ++..+..|...-.....-.....+.-.+.+...|. ++++.++.++..... .-.++.|....+ ...+.++.+.+|..+ T Consensus 300 ~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~-~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~ 378 (434) T protein:vir:98 300 ATDLVNISADTIGALDILHVAKVREHIASFSEGLE-SVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKLKSI 378 (434) T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHHHhc Confidence 11111123333334445555555566666777775 467776666643222 123566665554 567899999999998 Q ss_pred CCcccchhhHHHHHHHhCCCCCCCccccccc---cccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhch Q lcl|Aclame:pro 270 GAFTADPELEKDLRARYGLPAPAERDDGADA---AAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHP 346 (355) Q Consensus 270 G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (355) |+ + .+.+++.+|+++.+ -+..... ..........+...+ +++. + T Consensus 379 g~--~----~e~~~~~lg~~~~e-~~r~~~e~~~~~~~~~~~~~~~~~~---~~g~---------~-------------- 425 (434) T protein:vir:98 379 GY--P----LDVIAEELDESPAR-VRRIVAGAASQALLAASLLPAPGAP---SAGN---------V-------------- 425 (434) T ss_pred CC--c----HHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHhhhccCCCC---CCCC---------C-------------- Confidence 85 2 35788999986421 1111100 000000000000000 0000 0 Q ss_pred HHhhhcCCC Q lcl|Aclame:pro 347 AHRRCAPDG 355 (355) Q Consensus 347 ~~~~~~~~~ 355 (355) -+...++|| T Consensus 426 ~~~~~~~dg 434 (434) T protein:vir:98 426 PDSGGAVDG 434 (434) T ss_pred CcccCCCCC Confidence 001122233 No 139 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=98.00 E-value=7.5e-06 Score=48.68 Aligned_cols=222 Identities=12% Similarity=0.049 Sum_probs=114.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++....+ .+..|.+.|+.+++. ..+ .++..++.. +.....++...+|+++.-...+..||.+.+..+. T Consensus 142 y~~~~rn~~G---~~~~L~pl~~~~vr~-~~d-~~~~~~~~~----~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~ 212 (376) T protein:vir:10 142 YLERRRNMVG---GTLRLEPALAKYVRR-KAD-FNGFVYVNG----WQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSL 212 (376) T ss_pred EEEEEECCCC---CEEEEEEeCCcceEE-Eee-CCeEEEEEc----CCeEEEEccccEEEecCCCCCCCcccccHHHHHH Confidence 7788775433 477888999887753 223 233333332 2345678888888877655567889999988888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeec-CCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCce-eEEc-----c Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGA-PLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEAA-GGYI-----P 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~-~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~~-~~v~-----p 152 (355) .....-.....+-..|.+ .| +.|-++-. .++..+ .+ ..+.+++.+.+... |+.. .+++ + T Consensus 213 ~si~l~~aa~~f~~~~f~-NG-a~pggIl~~~d~~l~---~e--------~~~~lr~~~~~~~G~~N~~~~~vl~~~g~~ 279 (376) T protein:vir:10 213 HSAWLNESSTLFRRKYYE-NG-SHAGFILYMTDAAQK---QD--------DVDNMRDALKNAKGPGNFRNVFMYAPGGKK 279 (376) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCCCCC---HH--------HHHHHHHHHHHhcCccccCceeEecCCCCc Confidence 777665555555555554 33 34533322 222211 11 22334444444332 2222 2333 3 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFT-GSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~-~~~~ad~~~i~~~ln~~li 230 (355) .|++++-++.......|.+.-++-.++|+.+...+-..++ .+.++++++-.+-...++. .-+.-.++.|++ +|..|. T Consensus 280 ~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~Pl~~~iee-ln~~L~ 358 (376) T protein:vir:10 280 DGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLG 358 (376) T ss_pred cceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcc Confidence 4566666655555567888889999999999887643332 1223344544433333222 233334444432 332221 Q ss_pred HHHHHhCCCCcccccEEEecCCC--c-cHHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLG--K-EQPV 258 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~--~-d~~~ 258 (355) . .+ ++|+..+ . |.++ T Consensus 359 ~-----------~~--~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 359 E-----------EV--VRFDDYEIPPAPVAA 376 (376) T ss_pred c-----------cc--cccChhHhhcccccC Confidence 1 12 3332211 1 1111 No 140 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=98.00 E-value=7.5e-06 Score=48.68 Aligned_cols=308 Identities=9% Similarity=-0.002 Sum_probs=131.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee---------------eeeecCCCceEEE-eecCCC----------CCCceeeC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS---------------RFDVAPDGGLVAI-EQWGVF----------GKATVRIP 54 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~---------------~f~~~~~g~l~~~-~q~~~~----------g~~~~~ip 54 (355) +| ++|.+..|.-.+-+|..++|..|. =+++|..|+.+.+ -..... +.....+| T Consensus 155 ~f-~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvp 233 (505) T protein:vir:96 155 VL-VREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVP 233 (505) T ss_pred eE-EEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccC Confidence 33 223222222122234444333332 2556777775432 211111 12344577 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EeecCCCCccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPI-YQGAPLPEAIARDTARAEQWLNDQKEE 133 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~-~~~~~~~~~~~~d~~~~e~~~~~~~~~ 133 (355) ...+||+-...+.+..-|.|.|.++.....-........+...-... =+.. ++...+.......... T Consensus 234 a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A-~~a~fi~~~~~~~~~~~~~~~----------- 301 (505) T protein:vir:96 234 ADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGA-KKVGFYEQDPEAYDQPPEDDQ----------- 301 (505) T ss_pred HhHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhh-hheeeeecCCccCCCcccccc----------- Confidence 76666544445688889999999998776554444444443333221 1222 2222111111111000 Q ss_pred HHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhh--hhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 134 GLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 134 l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) ......+. ......++.|.+|++++++.....|..|.+..-+.|+..+.-. .||.+- .+.||+.+-.-..-+. T Consensus 302 -~~~~~~l~--pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~--s~~nYSS~R~~~~e~~ 376 (505) T protein:vir:96 302 -GEIVEEVE--AGTYQLLPYGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDL--EGVNFSSLRSGELDER 376 (505) T ss_pred -CccccccC--CceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHHHHHHHHHHH Confidence 01112333 3357788999999999988888999999999999999997544 344332 2245554433333333 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hC----CCC--cccccEEEecCCC--c-cHHHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 212 GSLNAVMKHIADVTQQHVVEDLVD---QN----WGP--EEPAPRLVPAQLG--K-EQPVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 212 ~~~~ad~~~i~~~ln~~li~~l~~---lN----f~~--~~~~P~~~~~~~~--~-d~~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) ..++.....+...+-+-+..++++ ++ .+. ...+-...+.... - |-.+-+++....+++|+... + T Consensus 377 r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~----~ 452 (505) T protein:vir:96 377 DLYKLLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSR----S 452 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCH----H Confidence 334444444444333334333222 11 111 1112222222211 1 33444566677778887542 2 Q ss_pred HHHHHHhCCCCCCCccccccccc--cccCCccccccccccccccCCcccCccccc Q lcl|Aclame:pro 280 KDLRARYGLPAPAERDDGADAAA--AKAAGRRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 280 ~~~~e~~glp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) +.+++ .|....+--++...... +...-.....+ .............+..++ T Consensus 453 ~~~a~-~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~-~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 453 SIIRA-AGDDPEDVFDEIAWEEQLMRDKGVNPTPPE-QESKDATTDEEDDSASDD 505 (505) T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCCCCCCCCC Confidence 22333 34432111111000000 00000000000 000000000011111111 No 141 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=98.00 E-value=7.5e-06 Score=48.68 Aligned_cols=279 Identities=9% Similarity=-0.017 Sum_probs=124.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccce-eeeeecCCCceEE-EeecCCCCCCc---------------------------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTI-SRFDVAPDGGLVA-IEQWGVFGKAT---------------------------- 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i-~~f~~~~~g~l~~-~~q~~~~g~~~---------------------------- 50 (355) ++++||--.+|.+.+.-+ +|..+ -.|.....+++.. ++.....+... T Consensus 139 ~~~~v~~d~~~~~~i~~~---~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (468) T protein:vir:96 139 EWIQPYVDEQGEFKTFRV---PAEQAIPIWTNKERDELKAFIRLYELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEE 215 (468) T ss_pred EEEEEEEcCCCceEEEEE---cccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCceeeccccccc Confidence 788888655665443322 22221 1111111122211 00000000000 Q ss_pred ----------eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCcccc Q lcl|Aclame:pro 51 ----------VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIAR 118 (355) Q Consensus 51 ----------~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~ 118 (355) .+.+..+ ++.| ..|+.|.|.+..+....=--...+..++..++.+..|+.++++-... T Consensus 216 ~~~~~~~~~~~~~~~~~iPvv~~-----~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~----- 285 (468) T protein:vir:96 216 HVQAHYYVGNKSMSWNRVPFIPF-----KNNPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVLKGYEGE----- 285 (468) T ss_pred ccccceeeccccccCCcccEEEe-----cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcc----- Confidence 0111111 1222 24678999988766555455567788888889887777676653221 Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc--CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCc Q lcl|Aclame:pro 119 DTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP--HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKS 196 (355) Q Consensus 119 d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p--~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~ 196 (355) +.+ ....++..+ ..+.++ .+.+++++........++..++.+.+.|...-.+..++.++.++ T Consensus 286 ~~~--------------~~~~~~~~~--~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~ 349 (468) T protein:vir:96 286 DLE--------------EFMYNLKYY--KAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQDKFGN 349 (468) T ss_pred ccc--------------hhhhhhhcC--ceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccccccccc Confidence 111 111122211 233343 34678898877777889999999999999887666554332211 Q ss_pred cchhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccccEEEecCCCc-cHHHHHHHHHHHHhCC Q lcl|Aclame:pro 197 TGSYALGDTFASF----FTGSLNAVMKHIADVTQQHVVEDLVDQNWGP-EEPAPRLVPAQLGK-EQPVTAEAIRALVECG 270 (355) Q Consensus 197 ~GS~Al~~vh~~v----~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~-~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G 270 (355) +.+.+..+. .......-.+.+...|. ++++.++.+.... ...-..+.|....+ +..+.++ .++++| T Consensus 350 ----n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~g~~~d~~~i~i~f~~~~p~d~~e~a~---~~~~~g 421 (468) T protein:vir:96 350 ----SPSGIALKFMYSNLDLKANKLKNKTLTALQ-ELLQYIIDFYKLSIKVQDVEITFNFNVMVNELEQSQ---IGVNSQ 421 (468) T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEecCCCCcCHHHHHH---HHHhcC Confidence 112222222 22233444555566664 3666666653221 11223566665444 3444444 455678 Q ss_pred CcccchhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCc Q lcl|Aclame:pro 271 AFTADPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 271 ~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355) +.. .+.+.+.++. ..+..+-+.......... ......+ +..+..+. T Consensus 422 ~iS-----~et~i~~l~~v~D~~~E~~ri~~E~~~~~-~~~~~~~------~~~~~~~~ 468 (468) T protein:vir:96 422 YLS-----KETVVTNHPWVDDPVAEMERIDQEELALP-SIEEGLN------GKENNEPT 468 (468) T ss_pred CCc-----hHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHhhccC------CCCCCCCC Confidence 532 4556666643 222111000000000000 0000000 00000000 No 142 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=97.98 E-value=8.3e-06 Score=48.45 Aligned_cols=295 Identities=9% Similarity=-0.044 Sum_probs=133.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccce-eeeeecCCCceEE-EeecCCCCC------------------------------ Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTI-SRFDVAPDGGLVA-IEQWGVFGK------------------------------ 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i-~~f~~~~~g~l~~-~~q~~~~g~------------------------------ 48 (355) .++++|.-++|.....- .+|..+ -.|.....++++. ++.+..... T Consensus 157 a~~~v~~d~dg~~~~~~---~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~ 233 (492) T protein:vir:94 157 EWLHPYLDEEGEFKLFR---VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLE 233 (492) T ss_pred EEEEEEecCCCceEEEE---EcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeeccccccc Confidence 78888866666544332 222221 1111111222211 100000000 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.+..+ ++.| .+|+.|.|.+..+....=.-...+..++..++.|..++.++++-.+. +.. T Consensus 234 ~~~~~~~~~~~g~vPvv~~-----~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~-----~~~- 302 (492) T protein:vir:94 234 NSKTHFSTGSWGKIPFIPF-----KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQ-----ELP- 302 (492) T ss_pred cccccccccCCCccceEEe-----cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcc-----cch- Confidence 000011111 1222 23667889998766555455556778888888887776666553221 100 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) ....++. ...++.++.+.+++++....+...++..++++.+.|.+.--...++.+.-++..|.-+ T Consensus 303 -------------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~A 367 (492) T protein:vir:94 303 -------------EFKRLLR--YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVA 367 (492) T ss_pred -------------hhHHHHh--hccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCccccccCchHHH Confidence 0111121 1345667889999999877777789999999999998887766665433222122111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHH Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW-GPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEK 280 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf-~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~ 280 (355) -.....-.......-.+.+...|. ++++.++.+.- .....--.+.|....+ +..+.++.+.+|+ |+ ++ .+ T Consensus 368 l~~~~~~l~~k~~~k~~~f~~~l~-~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~e~~~~~~kl~--gi-iS----~e 439 (492) T protein:vir:94 368 LEFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VS----HE 439 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccceeeEEecCCCCCCHHHHHHHHHHHh--cc-Cc----hH Confidence 111112222333444455555564 36666665532 1111122456665444 5677888888875 65 33 46 Q ss_pred HHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchhHH Q lcl|Aclame:pro 281 DLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRR 336 (355) Q Consensus 281 ~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (355) .+.+.++. +.+..+-+.............+.. .......+.....+ .+.+.. T Consensus 440 t~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~e~e 492 (492) T protein:vir:94 440 TVLENHPFVEDLQAELERIEQEQMEYNKQLPNL-DDGGADSAQQQERS---NNKESE 492 (492) T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccc-ccccCCCCccccCC---ccccCC Confidence 67777765 333221111100000000000000 00000000000111 111110 No 143 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=97.98 E-value=8.4e-06 Score=48.41 Aligned_cols=228 Identities=12% Similarity=0.002 Sum_probs=119.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeec-CCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQW-GVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~-~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) ..|++.... | .+..|.+.|+.+++. ..+. +....++.+ ...+.....+|++.+|+.+.-......||.+.+..+ T Consensus 107 y~~~~rn~~-G--~~~~L~pl~~~~vr~-~~d~-~~~~~~~~~~~~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a 181 (345) T protein:vir:37 107 GLLKVRNGF-G--QVVRLVPLSSLYLRV-RKDG-GYSYLMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGG 181 (345) T ss_pred EEEEEEcCC-C--cEEEEEEEcCceeEE-EEeC-CeeEEEEEeEecCCceEEEEccccEEEecCCCCCCCcccccHHHHH Confidence 777776543 3 366788888886643 2222 222222221 112234457888888877654445677999998888 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEee-cCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCc--eeEEc---- Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQG-APLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEA--AGGYI---- 151 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~-~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~--~~~v~---- 151 (355) ......-.....+-..|.+ .| +.|-++- ..++..+.+ ..+.+++..++..+ |+. ..+.. T Consensus 182 ~~si~l~~~a~~~~~~~f~-NG-~~p~~Il~~~d~~l~~e-----------~~~~lk~~~~~~~g~~n~~~~~i~~p~g~ 248 (345) T protein:vir:37 182 IQSALLNSDATVFRRRYFS-NG-AHMGFILYSTDPDLTEE-----------MEEEIARKISESKGVGNFRSMFVNIANGH 248 (345) T ss_pred HHHHHHHHHHHHHHHHHHh-cc-CCcceEEEecCCCCCHH-----------HHHHHHHHHHHhcCcccccceEEEcCCCc Confidence 8887776666555555554 33 3443332 222221111 12233333333322 222 22333 Q ss_pred cCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHV 229 (355) Q Consensus 152 p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~l 229 (355) +.|+++.-++....-..|.++-++...+|+.+...+--.++ ..+++++++-.+-+..++ ..-+.-.++.|++.+|+ + T Consensus 249 ~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~-~ 327 (345) T protein:vir:37 249 PDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQ-D 327 (345) T ss_pred ccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh-h Confidence 45666666655555566888888999999999877643332 122334455444333333 34556666777777765 1 Q ss_pred HHHHHHhCCCCcccccEEEecCCCccHHH Q lcl|Aclame:pro 230 VEDLVDQNWGPEEPAPRLVPAQLGKEQPV 258 (355) Q Consensus 230 i~~l~~lNf~~~~~~P~~~~~~~~~d~~~ 258 (355) .. ++. . ..+.|++. ++.+ T Consensus 328 ----~~--~~~-~--~~i~F~~~--~L~~ 345 (345) T protein:vir:37 328 ----PE--IKN-L--LKIKFREQ--NFAK 345 (345) T ss_pred ----cc--CCC-c--ceEEecch--hhcC Confidence 11 111 1 24556432 1111 No 144 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=97.97 E-value=8.8e-06 Score=48.31 Aligned_cols=303 Identities=13% Similarity=0.051 Sum_probs=119.7 Q ss_pred CeEEEE-----eeeCCEEEEee------eeecC--ccceeeeeecCCCc-eEEEe-ecC--CCCCCceeeCCccEEEEec Q lcl|Aclame:pro 1 MFEQVY-----RIENGRARLGK------LAWRP--PRTISRFDVAPDGG-LVAIE-QWG--VFGKATVRIPVDRLVVFVN 63 (355) Q Consensus 1 V~Eivw-----~~~~g~~~~~~------l~~r~--~~~i~~f~~~~~g~-l~~~~-q~~--~~g~~~~~ip~~k~i~~~~ 63 (355) +..++| +.+++ +..+. |.+-. ..++.+|..+..+. ...+. ... ..+...-.|| |+++ . T Consensus 203 Lt~v~lrE~~~~~dd~-f~~~~~~q~RvL~~~~~G~y~v~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP---fv~~-~ 277 (535) T protein:vir:80 203 ISLVVIQENVLAQDDG-FETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIP---FQFI-G 277 (535) T ss_pred eeEEEEEEEEEecCCC-cccceeEEEEEEEecCCceEEEEEEEeecCCccccccceeecccCCCcccCeeE---EEEe-e Confidence 222223 21221 11111 11000 01112222221111 10000 000 0111111233 2322 2 Q ss_pred CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 64 EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA 143 (355) Q Consensus 64 ~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~ 143 (355) ....+--.+.+.|..++..-+---....+.-..+..-+.|+|++.|....... +... -..+.. T Consensus 278 ~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~il~~~~~P~l~i~G~~~~~~~--~~~~---------------~~~i~i 340 (535) T protein:vir:80 278 PLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE--DVFK---------------DFKVHL 340 (535) T ss_pred cCCCCCCCCccchHHHHHHHHHHhhchhHHHHHHHHhcCceeeeecCchhhhh--cCCC---------------CcceEe Confidence 22233344555555554443221122222333333335677887765321100 0000 001344 Q ss_pred CCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 GEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIAD 223 (355) Q Consensus 144 G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~ 223 (355) |+.+++.+|++.+..+++.++++... +.++-...+|... .+..+.......+.+-+. ........++...+..+++ T Consensus 341 G~~~~~~lP~~~~~~~~e~~~~~~a~-~~l~~~e~qM~~l-Ga~ll~~~~~~~Ta~~a~--~~~~~~~S~L~~~a~~le~ 416 (535) T protein:vir:80 341 GSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIAM-GANLLVKSGGNRTFGEAQ--QEEASEQSILSACTKNVSM 416 (535) T ss_pred cCcccccCCCCCCcceeeeccchhHH-HHHHHHHHHHHHH-HHHhhccCcccccHHHHH--HHHHHHhHHHHHHHHHHHH Confidence 88888999999999999988776554 3455555555442 223332211112222222 2333335567788889999 Q ss_pred HHHHHHHHHHHHhCCCC-cccccEEEecC--CC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccc-c Q lcl|Aclame:pro 224 VTQQHVVEDLVDQNWGP-EEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDG-A 298 (355) Q Consensus 224 ~ln~~li~~l~~lNf~~-~~~~P~~~~~~--~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~-~ 298 (355) .+++ ++.|+.++-... +..-++|.+.. .. ..+....+.+.++.+.|.+.. ...-.++ ++.|+..|....+. . T Consensus 417 al~~-aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~~~~all~~~~~G~Is~-et~~~~L-~r~gvl~~~~~~eee~ 493 (535) T protein:vir:80 417 AFRK-ALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITF-KEMRAGL-RRAGVASEDDAKAETE 493 (535) T ss_pred HHHH-HHHHHHHHcCCccCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCCH-HHHHHHH-HhCCCCCcccchHHHH Confidence 9974 889988875421 22234555432 11 222334556667788887442 2112233 55577544322111 1 Q ss_pred c----c---cccccCC-ccccccccccccccCCcccCccccc Q lcl|Aclame:pro 299 D----A---AAAKAAG-RRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 299 ~----~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) . + .+...+. ......+.......++...+.++.. T Consensus 494 ~ri~~E~~~~~~~~g~~~d~~~~g~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:80 494 GKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) T ss_pred HHHHhhhhhccccCCCCCCCCCCCCCcCcccCCccccccCCC Confidence 0 0 0111000 1111111111111112222222222 No 145 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=97.96 E-value=9.3e-06 Score=48.17 Aligned_cols=295 Identities=9% Similarity=-0.049 Sum_probs=132.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee-eeeecCCCceEE-EeecCCCCCC----------------------------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS-RFDVAPDGGLVA-IEQWGVFGKA----------------------------- 49 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~-~f~~~~~g~l~~-~~q~~~~g~~----------------------------- 49 (355) .++++|.-.+|...+.- .+|+.+. .|.....++++. ++.+...... T Consensus 148 ~y~~v~~d~d~~~~i~~---~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~ 224 (483) T protein:vir:12 148 EWLHPYLDEEGEFKLFR---VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLE 224 (483) T ss_pred EEEEEEEcCCCceEEEE---EcccceEEEEcCCCCCceEEEEEEEEeecceEEEEEecCeEEEEEEeCCeeeeccccccc Confidence 77888866666644332 2222221 111111122211 1000000000 Q ss_pred -----ceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 50 -----TVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 50 -----~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ..+.+..+ ++.| .+|+.|.|.+..+....=--...+..++..++-|..++.++++-..... . T Consensus 225 ~~~~~~~~~~~g~vPvv~~-----~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~-----~- 293 (483) T protein:vir:12 225 NSKTHFSTGSWGKIPFIPF-----KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQEL-----P- 293 (483) T ss_pred ccccccccCCCCccceEEe-----cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccc-----h- Confidence 00011111 1222 1367789999876555545556778888888888777776665322110 0 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) ....++. ....+.++.+.+++++....+...+..+++.+.+.|.+.-....++.++-++..|.-. T Consensus 294 -------------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~A 358 (483) T protein:vir:12 294 -------------EFKRLLR--YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVA 358 (483) T ss_pred -------------hHHHhhh--hccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHH Confidence 0011111 1234567888999999877777889999999999998886666554433222122111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHH Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW-GPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEK 280 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf-~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~ 280 (355) -+....-.......-.+.+...+. ++++.++.+.. .....-..+.|....+ +..+.++.+.+|. |+ ++ .+ T Consensus 359 l~~~~~~l~~k~~~~~~~f~~~l~-~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl~--Gi-iS----~e 430 (483) T protein:vir:12 359 LEFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VS----HE 430 (483) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccceeeEEeCCCCCCCHHHHHHHHHHHh--cc-Cc----hH Confidence 111111122233344444555553 35565555432 1111223566665555 5678888888884 64 32 45 Q ss_pred HHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 281 DLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 281 ~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.++. +.+..+-+.............+ ...+...........+...+.+ T Consensus 431 t~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~--~~~~~~~d~~~~~~~~~~~e~e 483 (483) T protein:vir:12 431 TVLENHPFVEDLQAELERIEQEQMEYNKQLP--NLDDGGADGAQQQERSNNKESE 483 (483) T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhcc--cccccccCCcccCCCCCcccCC Confidence 66777754 3332211110000000000000 0011111000000001011111 No 146 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=97.95 E-value=9.7e-06 Score=48.08 Aligned_cols=284 Identities=9% Similarity=-0.033 Sum_probs=130.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce-----------------------------EEEeecCCCCCCc- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL-----------------------------VAIEQWGVFGKAT- 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l-----------------------------~~~~q~~~~g~~~- 50 (355) .++++|.-.+|.+....+. |+.+ ...+++.+.. ..+...+..+... T Consensus 144 a~~~~~~d~~~~~~~~~i~---p~~~-~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 219 (474) T protein:vir:10 144 GARLAYIDTNGDIRIKNID---PYNV-IFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEV 219 (474) T ss_pred EEEEEEeCCCCeeEEEEEc---ccce-EEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCccccc Confidence 7788876666654433222 2211 0111221111 0111111111000 Q ss_pred --eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHH Q lcl|Aclame:pro 51 --VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQW 126 (355) Q Consensus 51 --~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~ 126 (355) .+.+..+ ++.|. .|+.|.|.+..+-...=-=...+...+..++.|..|+.+++|--... .+ T Consensus 220 ~~~~~~~g~vPvv~~~-----n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~---~~------- 284 (474) T protein:vir:10 220 GRYEHLFDYNPLFGVP-----NNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE---EM------- 284 (474) T ss_pred ccccCCCCccceEEec-----CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc---hh------- Confidence 1111111 12222 46778998888665554455567778888888887777776632211 10 Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 127 LNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 127 ~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) +.. +.. .....+.+.+.+++++........++..++.+.+.|...-.+..++.++-+ | +++.+. T Consensus 285 -------~~~----~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~--~--n~Sg~A 348 (474) T protein:vir:10 285 -------IQE----TQK-SGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFN--G--NVPIIG 348 (474) T ss_pred -------hhh----hhh-cceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccccc--c--cchHHH Confidence 111 111 123455688899999988777778899999999999887655555433221 1 112222 Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh-CC--CC-c-c--cccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 207 ASFFTG----SLNAVMKHIADVTQQHVVEDLVDQ-NW--GP-E-E--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 207 ~~v~~~----~~~ad~~~i~~~ln~~li~~l~~l-Nf--~~-~-~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) ...... .+..-.+.+...|. ++++.++.+ +. .. . . .-.++.|...-+ +..+.++.+.+|. |+ ++ T Consensus 349 l~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~--g~-iS 424 (474) T protein:vir:10 349 MKLKLMALENKCMTFERKMTAMLR-YQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLK--GQ-VS 424 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHh--cc-Cc Confidence 222222 23333445555553 355554442 21 11 1 1 123566765444 6678899998884 64 32 Q ss_pred chhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.+.+++ +.+..+-+............. .....+... ...+ ..+++ T Consensus 425 ----~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~-~~~~~~~~~-----~~~~-~~~s~ 474 (474) T protein:vir:10 425 ----ERTRLGQSQLVDDVDYELDEMEKESLEFNDKL-PDIDEGDAN-----DKSQ-NNQSE 474 (474) T ss_pred ----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhc-ccccCCCcC-----CCCc-cccCC Confidence 4677777765 332211111100000000000 000000000 0000 00011 No 147 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=97.95 E-value=9.7e-06 Score=48.08 Aligned_cols=284 Identities=9% Similarity=-0.033 Sum_probs=130.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCce-----------------------------EEEeecCCCCCCc- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGL-----------------------------VAIEQWGVFGKAT- 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l-----------------------------~~~~q~~~~g~~~- 50 (355) .++++|.-.+|.+....+. |+.+ ...+++.+.. ..+...+..+... T Consensus 144 a~~~~~~d~~~~~~~~~i~---p~~~-~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 219 (474) T protein:vir:94 144 GARLAYIDTNGDIRIKNID---PYNV-IFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEV 219 (474) T ss_pred EEEEEEeCCCCeeEEEEEc---ccce-EEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCccccc Confidence 7788876666654433222 2211 0111221111 0111111111000 Q ss_pred --eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHH Q lcl|Aclame:pro 51 --VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQW 126 (355) Q Consensus 51 --~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~ 126 (355) .+.+..+ ++.|. .|+.|.|.+..+-...=-=...+...+..++.|..|+.+++|--... .+ T Consensus 220 ~~~~~~~g~vPvv~~~-----n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~---~~------- 284 (474) T protein:vir:94 220 GRYEHLFDYNPLFGVP-----NNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE---EM------- 284 (474) T ss_pred ccccCCCCccceEEec-----CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc---hh------- Confidence 1111111 12222 46778998888665554455567778888888887777776632211 10 Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 127 LNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 127 ~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) +.. +.. .....+.+.+.+++++........++..++.+.+.|...-.+..++.++-+ | +++.+. T Consensus 285 -------~~~----~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~--~--n~Sg~A 348 (474) T protein:vir:94 285 -------IQE----TQK-SGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFN--G--NVPIIG 348 (474) T ss_pred -------hhh----hhh-cceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccccc--c--cchHHH Confidence 111 111 123455688899999988777778899999999999887655555433221 1 112222 Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh-CC--CC-c-c--cccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 207 ASFFTG----SLNAVMKHIADVTQQHVVEDLVDQ-NW--GP-E-E--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 207 ~~v~~~----~~~ad~~~i~~~ln~~li~~l~~l-Nf--~~-~-~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) ...... .+..-.+.+...|. ++++.++.+ +. .. . . .-.++.|...-+ +..+.++.+.+|. |+ ++ T Consensus 349 l~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~--g~-iS 424 (474) T protein:vir:94 349 MKLKLMALENKCMTFERKMTAMLR-YQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLK--GQ-VS 424 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHh--cc-Cc Confidence 222222 23333445555553 355554442 21 11 1 1 123566765444 6678899998884 64 32 Q ss_pred chhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.+.+++ +.+..+-+............. .....+... ...+ ..+++ T Consensus 425 ----~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~-~~~~~~~~~-----~~~~-~~~s~ 474 (474) T protein:vir:94 425 ----ERTRLGQSQLVDDVDYELDEMEKESLEFNDKL-PDIDEGDAN-----DKSQ-NNQSE 474 (474) T ss_pred ----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhc-ccccCCCcC-----CCCc-cccCC Confidence 4677777765 332211111100000000000 000000000 0000 00011 No 148 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=97.94 E-value=1e-05 Score=48.00 Aligned_cols=285 Identities=11% Similarity=0.020 Sum_probs=130.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceEE-EeecCCCCCC---------------------------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLVA-IEQWGVFGKA---------------------------- 49 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~~-~~q~~~~g~~---------------------------- 49 (355) +++++|.-++|++.+..+ +|+.+ ...+++ .+.++. ++.+...+.. T Consensus 139 ~~~~~y~d~~~~~~i~~~---~p~~~-~~v~d~~~~~~~~~~vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~ 214 (474) T protein:vir:96 139 EWLQPYIDENGEFKTFRV---PAEQA-IPIWTNKERDTLKAFIRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGE 214 (474) T ss_pred eEEEEEecCCCceEEEEE---cccce-EEEEcCCCCCceEEEEEEEeecCceEEEEEeCCeEEEEEecCCceeecccccc Confidence 888888766676553332 22222 111221 222211 1100000000 Q ss_pred ----------ceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccc Q lcl|Aclame:pro 50 ----------TVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIA 117 (355) Q Consensus 50 ----------~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~ 117 (355) ..+.+..+ ++.|+ +|+.|.|.+..+-...=--...+..++..++.|..|+.+++|-.+.. T Consensus 215 ~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~--- 286 (474) T protein:vir:96 215 EHIQSHYYVGNKRVSWGRVPFIPFK-----NNPQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYEGQD--- 286 (474) T ss_pred ccccccccccccccCCCceeEEEec-----cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc--- Confidence 01111111 12222 36778998887655554455577888999999888777776543211 Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc-CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCc Q lcl|Aclame:pro 118 RDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP-HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKS 196 (355) Q Consensus 118 ~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p-~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~ 196 (355) . .....++. ....+.++ +|.+++++........++..++.+.+.|...--+..++.++. T Consensus 287 --~--------------~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-- 346 (474) T protein:vir:96 287 --L--------------DEFMRNLK--YYKAINVDGDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQDKF-- 346 (474) T ss_pred --c--------------cchhhhhh--cCceEEecCCCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCcccccccc-- Confidence 0 01112222 12344444 578899998777778899999999999999877776654322 Q ss_pred cchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cccEEEecCCCc-cHHHHHHHHHHHHhCC Q lcl|Aclame:pro 197 TGSYALGDTFASFFT----GSLNAVMKHIADVTQQHVVEDLVDQNWGPEE-PAPRLVPAQLGK-EQPVTAEAIRALVECG 270 (355) Q Consensus 197 ~GS~Al~~vh~~v~~----~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~-~~P~~~~~~~~~-d~~~~ae~~~~l~~~G 270 (355) |+ +++.+..+... .....-.+.+...|. ++++.++.+...... .-..+.|....+ +..+.+ +.++++| T Consensus 347 -~~-n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~-~~~~~i~~~~~~~~~~~~i~i~f~~~~p~~~~e~~---~~~~~ag 420 (474) T protein:vir:96 347 -GN-SPSGIALKFMYSNLDLKANKLKNKTLTALQ-ELLQYIIDFYKLNIKVQDVEITFNFNVMVNELEQS---QIGVQSQ 420 (474) T ss_pred -cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccceeeEEeccCCCcCHHHHH---HHHHhcC Confidence 11 12222233322 233344455666664 366666665422211 123455655444 334444 4566678 Q ss_pred CcccchhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccc Q lcl|Aclame:pro 271 AFTADPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 271 ~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) +. + .+.+.+.++. +.+..+-+............. ....+...+.. ....+.-+ T Consensus 421 ~i-S----~et~~~~~~~v~d~~~E~~ri~~E~~e~~~~~--~~~~~~~~~~~--~d~~~e~~ 474 (474) T protein:vir:96 421 YL-S----KETVVTNHPWVDDPVAELERIEQDNIDFNKQL--PPLEGDANGRA--QDNESETN 474 (474) T ss_pred CC-c----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcc--ccccccccccc--CCCcccCC Confidence 53 2 4556666654 332211111100000000000 00000000000 00001011 No 149 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=97.91 E-value=1.1e-05 Score=47.72 Aligned_cols=300 Identities=13% Similarity=-0.016 Sum_probs=122.7 Q ss_pred CeEEEEeeeCCEEEEeeeeec------Ccc------ceeeeeecCCCceEEE----------------eecCCC------ Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR------PPR------TISRFDVAPDGGLVAI----------------EQWGVF------ 46 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r------~~~------~i~~f~~~~~g~l~~~----------------~q~~~~------ 46 (355) .+++||..++|...+..+.+. ++. ...++..+.++...+. ...... T Consensus 116 ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (456) T protein:vir:10 116 SYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTR 195 (456) T ss_pred eEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeee Confidence 678999776665433222111 111 0111111112111000 000000 Q ss_pred --C-CC---ceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccch Q lcl|Aclame:pro 47 --G-KA---TVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDT 120 (355) Q Consensus 47 --g-~~---~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~ 120 (355) + .. ..+.... ++... ...|+.|.|.+..+....=--...+.+.+...+-+..+..+++|...... ..|. T Consensus 196 ~~~~~~~~~~~~~~~~-~~pvv---~~~N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~-~~d~ 270 (456) T protein:vir:10 196 ISDSWVPVGDAVVTGS-PPPVV---VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLP-NVDE 270 (456) T ss_pred cCCceeeccccCCCCC-ceeEE---EecCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccc-cccc Confidence 0 00 0000000 11111 13578899998887654433444455555666666666666655432211 1111 Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh Q lcl|Aclame:pro 121 ARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY 200 (355) Q Consensus 121 ~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~ 200 (355) .+.. .+. ...+..+.+....+|.+.++..+. ..+...|...++.+-.+|+..---+....++..+..|. T Consensus 271 -~g~~-----~~~----~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg 339 (456) T protein:vir:10 271 -NGNA-----IDY----ASIFEAAPGALWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSA 339 (456) T ss_pred -cccc-----cch----hhhhhhhccccccCCCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcccccChHH Confidence 0100 000 011122333445577887765443 22334566666666666655433222111111111121 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 201 ALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 201 Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) ..-.....-+......-.+.+...|. ++++.++.+.......-.++.|....+ ...+.++++.+|+.+|+.. . T Consensus 340 ~Ai~~~~~~l~~k~~~~~~~f~~~l~-~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~-----~ 413 (456) T protein:vir:10 340 EGAHNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESW-----A 413 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCCh-----H Confidence 11122333344444555566666664 466766666543322223566665543 5678899999999999732 3 Q ss_pred HHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCcc Q lcl|Aclame:pro 280 KDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPR 329 (355) Q Consensus 280 ~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (355) +-+++.+|+.+..-......-..... ......+...+. ..++. T Consensus 414 ~~~~~~lg~~~~~i~~~e~er~~~e~---~~~~~~~~~~~~----~~~~~ 456 (456) T protein:vir:10 414 SIRRNILNYNADQIKQDDLDRAREQI---TLFAGNPVQRPQ----EDGSR 456 (456) T ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHH---HHHhhhhhhcCC----CCCCC Confidence 45677888853211100000000000 000000000000 00000 No 150 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=97.91 E-value=1.1e-05 Score=47.72 Aligned_cols=300 Identities=13% Similarity=-0.016 Sum_probs=122.7 Q ss_pred CeEEEEeeeCCEEEEeeeeec------Ccc------ceeeeeecCCCceEEE----------------eecCCC------ Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR------PPR------TISRFDVAPDGGLVAI----------------EQWGVF------ 46 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r------~~~------~i~~f~~~~~g~l~~~----------------~q~~~~------ 46 (355) .+++||..++|...+..+.+. ++. ...++..+.++...+. ...... T Consensus 116 ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (456) T protein:vir:10 116 SYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTR 195 (456) T ss_pred eEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeee Confidence 678999776665433222111 111 0111111112111000 000000 Q ss_pred --C-CC---ceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccch Q lcl|Aclame:pro 47 --G-KA---TVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDT 120 (355) Q Consensus 47 --g-~~---~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~ 120 (355) + .. ..+.... ++... ...|+.|.|.+..+....=--...+.+.+...+-+..+..+++|...... ..|. T Consensus 196 ~~~~~~~~~~~~~~~~-~~pvv---~~~N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~-~~d~ 270 (456) T protein:vir:10 196 ISDSWVPVGDAVVTGS-PPPVV---VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLP-NVDE 270 (456) T ss_pred cCCceeeccccCCCCC-ceeEE---EecCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccc-cccc Confidence 0 00 0000000 11111 13578899998887654433444455555666666666666655432211 1111 Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh Q lcl|Aclame:pro 121 ARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY 200 (355) Q Consensus 121 ~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~ 200 (355) .+.. .+. ...+..+.+....+|.+.++..+. ..+...|...++.+-.+|+..---+....++..+..|. T Consensus 271 -~g~~-----~~~----~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg 339 (456) T protein:vir:10 271 -NGNA-----IDY----ASIFEAAPGALWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSA 339 (456) T ss_pred -cccc-----cch----hhhhhhhccccccCCCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcccccChHH Confidence 0100 000 011122333445577887765443 22334566666666666655433222111111111121 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 201 ALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 201 Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) ..-.....-+......-.+.+...|. ++++.++.+.......-.++.|....+ ...+.++++.+|+.+|+.. . T Consensus 340 ~Ai~~~~~~l~~k~~~~~~~f~~~l~-~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~-----~ 413 (456) T protein:vir:10 340 EGAHNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESW-----A 413 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCCh-----H Confidence 11122333344444555566666664 466766666543322223566665543 5678899999999999732 3 Q ss_pred HHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCcc Q lcl|Aclame:pro 280 KDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPR 329 (355) Q Consensus 280 ~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (355) +-+++.+|+.+..-......-..... ......+...+. ..++. T Consensus 414 ~~~~~~lg~~~~~i~~~e~er~~~e~---~~~~~~~~~~~~----~~~~~ 456 (456) T protein:vir:10 414 SIRRNILNYNADQIKQDDLDRAREQI---TLFAGNPVQRPQ----EDGSR 456 (456) T ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHH---HHHhhhhhhcCC----CCCCC Confidence 45677888853211100000000000 000000000000 00000 No 151 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=97.88 E-value=1.3e-05 Score=47.42 Aligned_cols=223 Identities=12% Similarity=0.097 Sum_probs=116.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++.... | .+..|.+.|+.++++ ..+++..+... .+.....+++..+|+++.-...+..||.+.+..+. T Consensus 112 y~~~~rn~~-G--~~~~L~pl~~~~v~~---~~~~~~~~~~~---~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~ 182 (344) T protein:vir:56 112 FLEKRYSTT-G--KVIRLETSPAKYTRR---GVEEDVYWWVP---SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSAL 182 (344) T ss_pred EEEEEECCC-C--cEEEEEEeCCceeEE---eecCCEEEEEe---cCCeEEEEcCccEEEECCCCCCCCcccccHHHHHH Confidence 777876543 3 467788888886643 33444333221 22344678888888776544456679999999888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEee-cCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCceeEEc--c---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQG-APLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEAAGGYI--P---- 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~-~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~~~~v~--p---- 152 (355) .....-.....+-..|.+. | ++|-++- ..++..+ .+ ..+.+++.++...+ |+.-.+++ | T Consensus 183 ~si~l~~~a~~~~~~~f~N-G-a~pg~Il~~~d~~ls---~e--------~~~~lk~~~~~~~g~~~~r~l~l~~p~g~~ 249 (344) T protein:vir:56 183 NSAWLNESATLFRRKYYEN-G-AHAGYIMYVTDAVQD---RN--------DIEMLRENMVKSKGRNNFKNLFLYAPQGKA 249 (344) T ss_pred HHHHHHHHHHHHHHHHHhc-c-CCCceEEEecCCCCC---HH--------HHHHHHHHHHHhcCCCCccceEEecCCCCc Confidence 8877766666666666653 3 3453332 2222211 11 12333333333332 22233444 3 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~li 230 (355) +|++++-++....-..|.+.-++-..+|+.+...+--.++ .+.++|+++-.+-...++ ..-+.-.++.|++ +|..|. T Consensus 250 ~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~ie~-~n~~l~ 328 (344) T protein:vir:56 250 DGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIG 328 (344) T ss_pred cceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhhc Confidence 4666666665555566888889999999999887643332 222344455333333322 2233334444443 333332 Q ss_pred HHHHHhCCCCcccccEEEecCCCccHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLGKEQP 257 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~~d~~ 257 (355) ..++ +|.-...+.++- T Consensus 329 ~~~~-----------~F~~y~l~~~~~ 344 (344) T protein:vir:56 329 QEVI-----------RFKNYSLDTDNG 344 (344) T ss_pred cccc-----------cCCCccccccCC Confidence 2222 221111211111 No 152 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=97.88 E-value=1.3e-05 Score=47.41 Aligned_cols=311 Identities=10% Similarity=-0.030 Sum_probs=132.6 Q ss_pred CeEEEEeeeCCEEEEeee-----e--ecC-----ccc-eeeeeec----------------CCCceEEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKL-----A--WRP-----PRT-ISRFDVA----------------PDGGLVAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l-----~--~r~-----~~~-i~~f~~~----------------~~g~l~~~~q~~~~g~--- 48 (355) +++++|.-++|.+.+..+ . +.+ +.. +.+|... ..+++..+...+..+. T Consensus 150 a~~~vy~ded~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~ 229 (511) T protein:vir:96 150 AYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLT 229 (511) T ss_pred eEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccc Confidence 777777655554333321 1 111 001 1111110 0111111111111100 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.|..+ ++.|. .|..|.|.+..+....=--...+..++..++.|..++.+++|......... .. T Consensus 230 ~~~~~~~~~~~~~vPvv~~~-----nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~--~~ 302 (511) T protein:vir:96 230 PRENGFESHSFERMPITEFS-----NNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEV--RK 302 (511) T ss_pred ccccccccccCCceeeEEec-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccCCchhh--cc Confidence 011111111 23333 356789998887766655666788888889988888888776432211100 00 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) . ....+..+..... ....+.-...+.++++++...+...++..++++.+.|...-....++.++-++..|.-. T Consensus 303 ~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~A 375 (511) T protein:vir:96 303 Q------KEANVLFLEPTVY-ADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEA 375 (511) T ss_pred c------ccccceecccccc-cccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHH Confidence 0 0000000000000 00111123456788898877777788999999999998887777665543222112111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC----cccccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ---NWGP----EEPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l---Nf~~----~~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) -.....-.......-.+.+...|++ +++.++.+ +... .-.-.++.|....+ +..+.++.+.++ .|+ ++ T Consensus 376 l~~~~~~l~~k~~~k~~~~~~~l~~-~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~G~-iS 451 (511) T protein:vir:96 376 MKYKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGK-IS 451 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCcccccccccceEEeCCCCCCCHHHHHHHHHHH--hcc-CC Confidence 1111122222333344555666654 45554443 2111 11124677765444 567778888887 465 33 Q ss_pred chhhHHHHHHHhCC-CCCCCcccccccc----ccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGADAA----AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.+.+.++. +.+..+-+..... .+....+......+... ....+...+.+...+ T Consensus 452 ----~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 452 ----QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDIND-DEQDDDTKDTVDKKE 511 (511) T ss_pred ----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC-CCCCCcccccccccC Confidence 4566777764 3222111111100 00000011100100000 000000111111111 No 153 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=97.88 E-value=1.3e-05 Score=47.38 Aligned_cols=311 Identities=10% Similarity=-0.053 Sum_probs=129.0 Q ss_pred CeEEEEeeeCCEEEEeee-----e--ecC-----ccc-eeeeeec----------------CCCceEEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKL-----A--WRP-----PRT-ISRFDVA----------------PDGGLVAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l-----~--~r~-----~~~-i~~f~~~----------------~~g~l~~~~q~~~~g~--- 48 (355) .++++|.-.+|.+.+..+ . +-+ +.. +.+|... ..+++..+...+..+. T Consensus 150 a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~ 229 (511) T protein:vir:78 150 AYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLT 229 (511) T ss_pred eEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccc Confidence 777777655554333221 1 111 000 0011110 1111222222111100 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.|..+ ++.|. .++.|.|.+..+....=--...+..++..++.|..++.+++|......... .. T Consensus 230 ~~~~~~~~~~~g~vPvv~~~-----n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~--~~ 302 (511) T protein:vir:78 230 PRENSFESHSFERMPITEFS-----NNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEV--RK 302 (511) T ss_pred ccccccccCcCcccceEEec-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchhh--cc Confidence 001111111 23332 356788988886555544555678888888988888888777432221100 00 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) .. ...+.. +.........+.-...+.++++++...+...++..++++.+.|...-..+.++.++-++..|... T Consensus 303 ~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~A 375 (511) T protein:vir:78 303 QK------EANVLF-LEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEA 375 (511) T ss_pred cc------ccccee-ccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHH Confidence 00 000000 00000000011122446778888877777788999999999999887777665433221112111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCc--c--cccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ---NWGPE--E--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l---Nf~~~--~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) -.....-.......-.+.+...|.+ +++.++.+ +.+.. . .-.++.|....+ +..+.++.+.+|. |+ ++ T Consensus 376 l~~~~~~l~~ka~~~~~~f~~~l~~-~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~-iS 451 (511) T protein:vir:78 376 MKYKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 451 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC Confidence 1111122222233334455556643 55554443 11111 1 123677765544 5677888888885 65 33 Q ss_pred chhhHHHHHHHhCC-CCCCCccccccccc----cccCCccccccccccccccCCcccCccccchhHHHH Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGADAAA----AKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGP 338 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355) .+.+.+.++. +.+..+-+...... +....+.......... ....++.+....+.. T Consensus 452 ----~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 452 ----QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDIND-----DEQDDDTKDTVDKKE 511 (511) T ss_pred ----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC-----CCCCCCccCcccccC Confidence 3566677654 22221111111000 0000001000000000 000011110000000 No 154 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=97.88 E-value=1.3e-05 Score=47.38 Aligned_cols=311 Identities=10% Similarity=-0.053 Sum_probs=129.0 Q ss_pred CeEEEEeeeCCEEEEeee-----e--ecC-----ccc-eeeeeec----------------CCCceEEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKL-----A--WRP-----PRT-ISRFDVA----------------PDGGLVAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l-----~--~r~-----~~~-i~~f~~~----------------~~g~l~~~~q~~~~g~--- 48 (355) .++++|.-.+|.+.+..+ . +-+ +.. +.+|... ..+++..+...+..+. T Consensus 150 a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~ 229 (511) T protein:vir:96 150 AYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLT 229 (511) T ss_pred eEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccc Confidence 777777655554333221 1 111 000 0011110 1111222222111100 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.|..+ ++.|. .++.|.|.+..+....=--...+..++..++.|..++.+++|......... .. T Consensus 230 ~~~~~~~~~~~g~vPvv~~~-----n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~--~~ 302 (511) T protein:vir:96 230 PRENSFESHSFERMPITEFS-----NNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEV--RK 302 (511) T ss_pred ccccccccCcCcccceEEec-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchhh--cc Confidence 001111111 23332 356788988886555544555678888888988888888777432221100 00 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) .. ...+.. +.........+.-...+.++++++...+...++..++++.+.|...-..+.++.++-++..|... T Consensus 303 ~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~A 375 (511) T protein:vir:96 303 QK------EANVLF-LEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEA 375 (511) T ss_pred cc------ccccee-ccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHH Confidence 00 000000 00000000011122446778888877777788999999999999887777665433221112111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCc--c--cccEEEecCCCc-cHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ---NWGPE--E--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l---Nf~~~--~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~ 274 (355) -.....-.......-.+.+...|.+ +++.++.+ +.+.. . .-.++.|....+ +..+.++.+.+|. |+ ++ T Consensus 376 l~~~~~~l~~ka~~~~~~f~~~l~~-~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~-iS 451 (511) T protein:vir:96 376 MKYKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 451 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC Confidence 1111122222233334455556643 55554443 11111 1 123677765544 5677888888885 65 33 Q ss_pred chhhHHHHHHHhCC-CCCCCccccccccc----cccCCccccccccccccccCCcccCccccchhHHHH Q lcl|Aclame:pro 275 DPELEKDLRARYGL-PAPAERDDGADAAA----AKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGP 338 (355) Q Consensus 275 ~~~~~~~~~e~~gl-p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355) .+.+.+.++. +.+..+-+...... +....+.......... ....++.+....+.. T Consensus 452 ----~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 452 ----QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDIND-----DEQDDDTKDTVDKKE 511 (511) T ss_pred ----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC-----CCCCCCccCcccccC Confidence 3566677654 22221111111000 0000001000000000 000011110000000 No 155 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=97.86 E-value=1.4e-05 Score=47.14 Aligned_cols=207 Identities=10% Similarity=0.009 Sum_probs=108.2 Q ss_pred eeecCCCceEEEeecCC--CCCCceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 29 FDVAPDGGLVAIEQWGV--FGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPI 106 (355) Q Consensus 29 f~~~~~g~l~~~~q~~~--~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~ 106 (355) .+..++|++.+...... .+.....++++.+++++.-...+..||.|.+..+......-....++-..|... | ++|- T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~N-g-~~p~ 78 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSN-G-AHMG 78 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCc Confidence 23456677666543221 112345688888887765444466789999888776665544444444455543 2 4665 Q ss_pred EeecC-CCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc-eeEEc------cCCceEEEeccCCCcccHHHHHHHHHH Q lcl|Aclame:pro 107 YQGAP-LPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA-AGGYI------PHGANFTLTGVQGKLPEMDGPIRYHDE 178 (355) Q Consensus 107 ~~~~~-~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~-~~~v~------p~~~~ie~~~~~g~~~~~~~~i~~~d~ 178 (355) ++-.+ +.. -+++ . .+.+++...+.+++.+ ..+++ +.|++++-++.+.....|.+.-++-.. T Consensus 79 gil~~~~~~---l~~e----~----~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~ 147 (219) T protein:vir:98 79 FILYSTDPD---MTEE----M----EDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQ 147 (219) T ss_pred eEEEeCCCC---CCHH----H----HHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHH Confidence 43322 211 1111 1 2223333333332222 22333 356777777766666668888888899 Q ss_pred HHHHHHhhhhhccc-cCCccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCccH Q lcl|Aclame:pro 179 QIARAVLAHFLTLG-GDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGKEQ 256 (355) Q Consensus 179 ~Isk~ilgqtlt~~-~~~~~GS~Al-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~d~ 256 (355) +|+.+...+--.++ .+.++++++- .+.........+.--+..|++.||+++ + + +. -.++.|+.....+ T Consensus 148 eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~---~--~---~~--~~~~~F~~~~~~d 217 (219) T protein:vir:98 148 DVLTSHRFPPGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDY---E--I---KS--ALKVNFKQPEKRD 217 (219) T ss_pred HHHHHhCCCHHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhh---c--C---CC--ccEEeecCccccc Confidence 99999877643332 1122333442 333344445556666777777777642 1 1 11 1266776544322 Q ss_pred HH Q lcl|Aclame:pro 257 PV 258 (355) Q Consensus 257 ~~ 258 (355) +. T Consensus 218 ~~ 219 (219) T protein:vir:98 218 KN 219 (219) T ss_pred CC Confidence 22 No 156 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=97.81 E-value=1.7e-05 Score=46.68 Aligned_cols=293 Identities=9% Similarity=-0.003 Sum_probs=130.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee---------------eeeecCCCc--e-----------EEEeecCCCC----C Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS---------------RFDVAPDGG--L-----------VAIEQWGVFG----K 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~---------------~f~~~~~g~--l-----------~~~~q~~~~g----~ 48 (355) .++++|.-++|.+.+.. .+|..+. ++...+++. . ..++...... . T Consensus 133 ~~~~v~~d~dg~~~i~~---~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470) T protein:vir:99 133 SIASIYQGEDARPHLMY---SSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAA 209 (470) T ss_pred eEEEEEeCCCCeEEEEE---EccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccc Confidence 78888866666654332 2222221 111111111 0 0000000000 0 Q ss_pred CceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 49 ATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 49 ~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) ...+.|..++=++. ...|+.|.|.+..+....=--...+..++..++.+..++.++++-..+... + .+ T Consensus 210 ~~~~~~~g~vPvv~---~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~--~---g~---- 277 (470) T protein:vir:99 210 GYAINPYGLVPAVE---FFENEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDD--E---GN---- 277 (470) T ss_pred cccccCCCccceEe---ecCCCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccccc--c---cc---- Confidence 01111211111111 124678899998866555445556778888888888887777764332211 1 11 Q ss_pred HHHHHHHHHHHHHhcCCceeEEcc-----CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIP-----HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALG 203 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p-----~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~ 203 (355) .+.. + .....+.++ .+-+++++........++..++.+.+.|...-.+..++.++.++..|...- T Consensus 278 ----~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Ai 347 (470) T protein:vir:99 278 ----PKFD----F--KNNRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNFAGNSSGVAL 347 (470) T ss_pred ----hhhh----h--hhcceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCccccccccccCchHHHH Confidence 1111 1 112223333 355788887777777889999999999988877665544332221121111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--CCCcc--cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchh Q lcl|Aclame:pro 204 DTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ-N--WGPEE--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPE 277 (355) Q Consensus 204 ~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l-N--f~~~~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~ 277 (355) +....-.......-.+.+...|. ++++.++.+ + ..... .-..+.|....+ +..+.++.+.+|. |+ ++ T Consensus 348 ~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--gi-is--- 420 (470) T protein:vir:99 348 QYKLFAMKNKADSKERKFDKSLM-QLYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAE--GI-VS--- 420 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCcccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC--- Confidence 11122222233444455566664 355655443 2 11111 123667765554 5678888888885 64 33 Q ss_pred hHHHHHHHhCCCCCCCcccccc-cccccc-CCccccccccccccccCCcccCccccch Q lcl|Aclame:pro 278 LEKDLRARYGLPAPAERDDGAD-AAAAKA-AGRRRAKRLPGQRQGAALPSRSPRADPP 333 (355) Q Consensus 278 ~~~~~~e~~glp~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (355) .+.+.+.++.-.+..+-+... +..... .........+.....+. .++. T Consensus 421 -~et~l~~l~~vd~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~~-------~ee~ 470 (470) T protein:vir:99 421 -KKTQLGMIPDIEPDAEMKQIAKEKADAIKQTQQLSMPIDILKRDNN-------AEEE 470 (470) T ss_pred -HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCC-------ccCC Confidence 356667766533221101011 000000 00001111111111000 1110 No 157 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=97.79 E-value=1.9e-05 Score=46.47 Aligned_cols=223 Identities=12% Similarity=0.069 Sum_probs=114.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++.... | .+..|.+.|+.+++ +. .+++..+... .+.....++++.+|+++.-.-.+..||.+.+..+. T Consensus 112 y~~i~rn~~-G--~~~~L~~l~~~~vr-~~--~~~~~~~~v~---~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~ 182 (344) T protein:vir:60 112 FLEKRYSTT-G--KVIRLETSPAKYTR-RG--VEEDVYWWVP---SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSAL 182 (344) T ss_pred EEEEEECCC-C--cEEEEEEcCcceEE-Ee--ecCCeEEEEc---cCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHH Confidence 778877543 3 46778888888664 33 3333322221 12244678888888776544456779999998888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeec-CCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCceeEEc--c---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGA-PLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEAAGGYI--P---- 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~-~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~~~~v~--p---- 152 (355) .....-.....+-..|.+ .| +.|-++-. .++..+ .+ ..+.+++.++...+ |+.-.+++ | T Consensus 183 ~si~l~~~a~~~~~~~f~-NG-~~pg~il~~~~~~ls---~e--------~~~~ik~~~~~~~g~~~~r~~~l~~p~g~~ 249 (344) T protein:vir:60 183 NSAWLNESATLFRRKYYE-NG-AHAGYIMYVTDAVQD---RN--------DIEMLRENMVKSKGRNNFKNLFLYAPQGKA 249 (344) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCcCCC---HH--------HHHHHHHHHHHhcCCCCCcceEEecCCCCc Confidence 877766666555556664 33 34433322 222211 11 22334444444332 22222333 3 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFF-TGSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~-~~~~~ad~~~i~~~ln~~li 230 (355) +|++++-++....-..|.+.-++-..+|+.+...+--.++ .+.++|+++-.+-+..++ ..-+.-.++.|++ || T Consensus 250 ~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~e~-ln---- 324 (344) T protein:vir:60 250 DGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-IN---- 324 (344) T ss_pred cceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HH---- Confidence 4566666655555556888889999999999887643332 222344455433222222 2222223333321 22 Q ss_pred HHHHHhCCCCcccccEEEecCCCccHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLGKEQP 257 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~~d~~ 257 (355) .|| +. ..-+|.....+.++- T Consensus 325 ~~l------g~-~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 325 GWL------GQ-EVIRFKNYSLDTDNG 344 (344) T ss_pred Hhc------CC-cccccCccccCCCCC Confidence 232 12 222454433333332 No 158 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=97.78 E-value=2e-05 Score=46.34 Aligned_cols=310 Identities=11% Similarity=-0.040 Sum_probs=129.7 Q ss_pred CeEEEEeeeCCEEEEeee-----ee--cC-----ccc-eeeeeec----------------CCCceEEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKL-----AW--RP-----PRT-ISRFDVA----------------PDGGLVAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l-----~~--r~-----~~~-i~~f~~~----------------~~g~l~~~~q~~~~g~--- 48 (355) .++++|.-++|.+.+..+ .+ -+ +.. +.+|... ...++..+...+..+. T Consensus 150 ay~~vy~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~ 229 (511) T protein:vir:10 150 AYEIMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLT 229 (511) T ss_pred eEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCccccc Confidence 777777655554333221 10 00 111 1111110 0111112221111100 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.|..+ ++.|. .|..|.|.+..+....=--...+..++..++.|..++.+++|......... .. T Consensus 230 ~~~~~~~~~~~~~vPvv~f~-----nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~--~~ 302 (511) T protein:vir:10 230 PRENGFESHSFERMPITEFS-----NNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEV--RK 302 (511) T ss_pred ccccccccccCcceeEEEec-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeeccccCCchhh--cc Confidence 011112112 23332 356788988887666655566778888888988888888776433221100 00 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccch-hh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGS-YA 201 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS-~A 201 (355) .. ...+..+..+... ...+.-...+.+++++........++..++.+.+.|...-....++.++-++..| -| T Consensus 303 ~~------~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~A 375 (511) T protein:vir:10 303 QK------EANVLFLEPTVYA-DSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEA 375 (511) T ss_pred ch------hccceeccccccc-ccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHH Confidence 00 0000000000000 0011123446788888877777789999999999998886666665433211111 11 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC--cc--cccEEEecCCCc-cHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 202 LGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ---NWGP--EE--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFT 273 (355) Q Consensus 202 l~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l---Nf~~--~~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~ 273 (355) +. ....-.......-.+.+...|.+ +++.++.+ .... .. .-.++.|....+ +..+.++.+.+|. |+ + T Consensus 376 l~-~~~~~l~~k~~~k~~~f~~~l~~-~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~--G~-i 450 (511) T protein:vir:10 376 MK-YKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-I 450 (511) T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCcccccccceeeEEeCCCCCcCHHHHHHHHHHHh--cc-C Confidence 11 11111222233334444555543 44444443 1111 11 123666765444 5678888888884 64 3 Q ss_pred cchhhHHHHHHHhCC-CCCCCcccccccc----ccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 274 ADPELEKDLRARYGL-PAPAERDDGADAA----AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 274 ~~~~~~~~~~e~~gl-p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) + .+.+.+.++. +.+..+-+..... .+....+........... ...+...+.+...+ T Consensus 451 S----~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 451 S----QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDD-EQDDDTKDTVDKKE 511 (511) T ss_pred c----HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC-CCCCcccCcccccC Confidence 2 4567777764 3222111111100 000000111011100000 00001111111111 No 159 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=97.76 E-value=2.1e-05 Score=46.20 Aligned_cols=326 Identities=11% Similarity=0.010 Sum_probs=141.2 Q ss_pred CeEEEEeeeC----CEEEEeeeeecCcccee------------eeeecCCCceEEE-eecCCCC--------CCceeeCC Q lcl|Aclame:pro 1 MFEQVYRIEN----GRARLGKLAWRPPRTIS------------RFDVAPDGGLVAI-EQWGVFG--------KATVRIPV 55 (355) Q Consensus 1 V~Eivw~~~~----g~~~~~~l~~r~~~~i~------------~f~~~~~g~l~~~-~q~~~~g--------~~~~~ip~ 55 (355) +.-+.|.... |.-++-+|..++|..|. =+++|..|+.+.+ -.....| .....+|. T Consensus 147 f~~~~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA 226 (548) T protein:vir:95 147 LAQKLMGRVPNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEA 226 (548) T ss_pred EEEeeecccccccCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeech Confidence 6666775432 33333344445444342 2556666764322 2211111 23456888 Q ss_pred ccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 56 DRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGL 135 (355) Q Consensus 56 ~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~ 135 (355) ..+||+-...+.+..-|.++|.++.....-........++..-.. .-+...+....+.....+...... ... T Consensus 227 ~~VlHif~~~r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~-A~~a~fi~~~~~~~~~~~~~~~~~------~~~- 298 (548) T protein:vir:95 227 ERIIHIAYRKRIGQNRGVPMLHAVLIRLADLKDYEESERVAARIS-AALAMYIKKGNPDSYTVEPGKDRK------NRT- 298 (548) T ss_pred hHheecccccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHh-hhheeeeecCCCccccCCCCcccc------ccc- Confidence 877765555668899999999999887655444444443333322 223333322222111111110000 000 Q ss_pred HHHHHHhcCCceeE-EccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhh--hhccccCCccchhhhHHHHHHHHHH Q lcl|Aclame:pro 136 QLAKEFRAGEAAGG-YIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDKSTGSYALGDTFASFFTG 212 (355) Q Consensus 136 ~~~~~~~~G~~~~~-v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~~~GS~Al~~vh~~v~~~ 212 (355) ..+ .....+ .++.|.+|++++++.....|..|.+..-+.|+..+.-. .||.+. . +|||.+-.-..-+.. T Consensus 299 ---~~~--~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~--s-~nYSS~R~~l~e~~r 370 (548) T protein:vir:95 299 ---IPI--APGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAY--D-GTYSAQRQELVEGWL 370 (548) T ss_pred ---ccc--cCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--c-hhHHHHHHHHHHHHH Confidence 012 222223 37889999999988778899999999999999997543 455442 2 466654433333344 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hC----CCC---cccccEEEecCCC--c-cHHHHHHHHHHHHhCCCcccchh-- Q lcl|Aclame:pro 213 SLNAVMKHIADVTQQHVVEDLVD---QN----WGP---EEPAPRLVPAQLG--K-EQPVTAEAIRALVECGAFTADPE-- 277 (355) Q Consensus 213 ~~~ad~~~i~~~ln~~li~~l~~---lN----f~~---~~~~P~~~~~~~~--~-d~~~~ae~~~~l~~~G~~~~~~~-- 277 (355) .++....++...+-+-+..++++ ++ .+. ...+-...+.... . |-.+-+++...++++|+...... T Consensus 371 ~~~~~q~~~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a 450 (548) T protein:vir:95 371 GYDLLQHEFIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVAR 450 (548) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHH Confidence 44444444444444434433222 22 111 1111122221111 1 33444556666777776432111 Q ss_pred --------------hHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhh Q lcl|Aclame:pro 278 --------------LEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRP 343 (355) Q Consensus 278 --------------~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (355) .+...++++||+.+.+....... ....+.....+...+. ..+.+.+- ....+. T Consensus 451 ~~G~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~--- 517 (548) T protein:vir:95 451 ARGRDPRELKKSRETEIKANRAAGLVFSSDAYHQLVK-SGMDPVEAVQKVYLGV--------GKMLTADE-ARELVN--- 517 (548) T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCCCCCcccccccc-cccCCCCchhhhcccc--------ccccccch-hHHhhc--- Confidence 12223455666532211100000 0000000000000000 01111110 111111 Q ss_pred hchHHhhh------------cCCC Q lcl|Aclame:pro 344 RHPAHRRC------------APDG 355 (355) Q Consensus 344 ~~~~~~~~------------~~~~ 355 (355) ++++.--. -.|| T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~ 541 (548) T protein:vir:95 518 RYGAGLPVPGPDFPNESNNGGADG 541 (548) T ss_pred cCCCCCcCCCCCCCcccccCCCCC Confidence 11111000 0011 No 160 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=97.74 E-value=2.3e-05 Score=45.96 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=112.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++.... | .+..|.+.|+.+++ . ..+++..+... .+.....+++..+|+++.-...+..||.+.+..+. T Consensus 112 y~~i~rn~~-G--~~~~L~pl~~~~vr-~--~~~~~~~~~~~---~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~ 182 (344) T protein:vir:20 112 FLEKRYSTT-G--KVIRLETSPAKYTR-R--GVEEDVYWWVP---SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSAL 182 (344) T ss_pred EEEEEECCC-C--cEEEEEEcCCceeE-e--eecCCEEEEEc---cCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHH Confidence 777776433 2 47889999888664 3 23333322221 22344678888888777554456789999988888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeec-CCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC-CceeEEc--c---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGA-PLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG-EAAGGYI--P---- 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~-~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G-~~~~~v~--p---- 152 (355) .....-.....+-..|.. .| +.|-++-. .++..+ .+ ..+.+++.++....+ +.-.+++ | T Consensus 183 ~si~l~~~a~~~~~~~f~-NG-a~p~~Il~~~d~~l~---~e--------~~~~ik~~~~~~~g~~n~r~l~l~~p~g~~ 249 (344) T protein:vir:20 183 NSAWLNESATLFRRKYYE-NG-AHAGYIMYVTDAVQD---RN--------DIEMLRENMVKSKGRNNFKNLFLYAPQGKA 249 (344) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCcCCC---HH--------HHHHHHHHHHHhcCCCCccceEEecCCCCc Confidence 777666555555555554 33 34433322 222211 11 223344444443322 2122333 3 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFT-GSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~-~~~~ad~~~i~~~ln~~li 230 (355) +|+++.-++....-..|.+.-++-..+|+.+...+--.++ .++++|+++-.+-+..++. .-+.-.+..+++ +| T Consensus 250 ~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~e~-in---- 324 (344) T protein:vir:20 250 DGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-IN---- 324 (344) T ss_pred cceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HH---- Confidence 4566666655554456888889999999999887643332 1223444554433333222 222223333321 22 Q ss_pred HHHHHhCCCCcccccEEEecCCCccHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLGKEQP 257 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~~d~~ 257 (355) .|| ... .-+|.+...+.+++ T Consensus 325 ~~l------g~~-~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 325 GWL------GQE-VIRFKNYSLDTDND 344 (344) T ss_pred Hhc------CCc-ccccCccccccCCC Confidence 222 111 12343333333222 No 161 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=97.72 E-value=2.5e-05 Score=45.78 Aligned_cols=307 Identities=10% Similarity=-0.013 Sum_probs=129.4 Q ss_pred CeEEEEeeeCCEEEEee-----ee--ecC-----ccce-eeeeec----------------CCCceEEEeecCCCCC--- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGK-----LA--WRP-----PRTI-SRFDVA----------------PDGGLVAIEQWGVFGK--- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~-----l~--~r~-----~~~i-~~f~~~----------------~~g~l~~~~q~~~~g~--- 48 (355) .+++||.-.+|.+.+.. +. +.+ +... .++... ..+++..+...+..+. T Consensus 150 ay~~vy~de~~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~ 229 (511) T protein:vir:93 150 AYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLT 229 (511) T ss_pred eEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccc Confidence 66677655454333221 11 111 0000 011110 1111222221111100 Q ss_pred ----CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh Q lcl|Aclame:pro 49 ----ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR 122 (355) Q Consensus 49 ----~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~ 122 (355) ...+.+..+ ++.|. .|..|.|.+..+-...=--...+..++..++.|..++.+++|..+...... .. T Consensus 230 ~~~~~~~~~~~g~vPvv~~~-----nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~--~~ 302 (511) T protein:vir:93 230 PRENGFESHSFERMPITEFS-----NNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEV--RK 302 (511) T ss_pred cccccccccCCCccceEEec-----CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCcccCchhh--cc Confidence 001111111 23333 356788988887666555556778888889988888777776433221100 00 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhh Q lcl|Aclame:pro 123 AEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYAL 202 (355) Q Consensus 123 ~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al 202 (355) .. ...+..+..+.. ......-...+.++++++...+...++.+++++.+.|.+.--.+.++.++-++.. T Consensus 303 ~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~~n~---- 371 (511) T protein:vir:93 303 QK------EANVLFLEPTVY-ADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQ---- 371 (511) T ss_pred cc------cccceecccccc-cccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccc---- Confidence 00 000000000000 0011122345678889887777778899999999999988777766543322111 Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCc--cc--ccEEEecCCCc-cHHHHHHHHHHHHhCC Q lcl|Aclame:pro 203 GDTFASFFT----GSLNAVMKHIADVTQQHVVEDLVDQ---NWGPE--EP--APRLVPAQLGK-EQPVTAEAIRALVECG 270 (355) Q Consensus 203 ~~vh~~v~~----~~~~ad~~~i~~~ln~~li~~l~~l---Nf~~~--~~--~P~~~~~~~~~-d~~~~ae~~~~l~~~G 270 (355) +.+...... .....-.+.+...|.+ +++.++.+ +.... .. -.++.|....+ +..+.++.+.+| .| T Consensus 372 Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~-~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~g 448 (511) T protein:vir:93 372 SGEAMKYKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GG 448 (511) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCcccccccccceEEeCCCCCCCHHHHHHHHHHH--hc Confidence 222222222 2233334455555543 55555543 22111 11 23666765544 567788888887 36 Q ss_pred CcccchhhHHHHHHHhCC-CCCCCcccccccc----ccccCCccccccccccccccCCcccCccccchhHHHH Q lcl|Aclame:pro 271 AFTADPELEKDLRARYGL-PAPAERDDGADAA----AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGP 338 (355) Q Consensus 271 ~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355) + ++ .+.+.+.++. +.+..+-+..... .+....+.......... +...+..++..-+.. T Consensus 449 ~-iS----~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 449 K-IS----QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDIND-----DEQDDDTKDTVDKKE 511 (511) T ss_pred c-Cc----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-----CCCCCcccccccccC Confidence 4 33 4567777754 3222111111100 01000011101100000 000111111110000 No 162 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=97.69 E-value=2.8e-05 Score=45.55 Aligned_cols=222 Identities=13% Similarity=0.084 Sum_probs=111.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++.... | .+..|.+.|+.++.. ..+. ++...... +.....+++..+|+++.-......||.+.+..+. T Consensus 117 y~~~~r~~~-G--~~~~L~~l~~~~v~~-~~~~-~~~~~~~~----~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~ 187 (351) T protein:vir:79 117 YLERRRNMV-G--GTLRLEPALAKYVRR-KADF-SGFVYVNG----WQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSL 187 (351) T ss_pred EEEEEECCC-C--CEEEEEEeCCcceee-eecC-CeEEEEec----CceEEEEcCccEEEeCCCCCCCCcccccHHHHHH Confidence 777776543 3 366888888887753 2222 33333221 2234568888888776555557889999998888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEe-ecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCc--eeEEcc---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQ-GAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEA--AGGYIP---- 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~-~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~--~~~v~p---- 152 (355) .....-.....+-..|.. .| ++|-++ ...++..+ .+ ..+.+++.+++..+ |+. ..+..| T Consensus 188 ~si~l~~~a~~~~~~~f~-NG-a~pg~il~~~~~~ls---~e--------~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~ 254 (351) T protein:vir:79 188 HSAWLNESSTLFRRKYYE-NG-SHAGFILYMTDAAQK---QD--------DVDNMRDALKNAKGPGNFRNVFMYAPGGKK 254 (351) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCCCCC---HH--------HHHHHHHHHHHhcCccccCceeEecCCCCc Confidence 887776666555555554 33 344332 22222211 11 12233333443322 222 223333 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFT-GSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~-~~~~ad~~~i~~~ln~~li 230 (355) .|+++.-++.......|.+.-++-.++|+.+...+--.++ .++++++++-.+-...++- .-+.-.++.|++ +|. T Consensus 255 ~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~--- 330 (351) T protein:vir:79 255 DGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LND--- 330 (351) T ss_pred cceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHh--- Confidence 4555555555555566999999999999999877643322 1123344443333333222 222223333322 222 Q ss_pred HHHHHhCCCCcccccEEEecCCC--c-cHHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLG--K-EQPV 258 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~--~-d~~~ 258 (355) +| +. . .++|+..+ . |.++ T Consensus 331 -~l------g~-~--~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 331 -WL------GD-E--VVTFDDYEIPPAPVAA 351 (351) T ss_pred -hc------Cc-c--eeeeChhhhccccccC Confidence 11 11 1 24443321 1 1111 No 163 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=97.64 E-value=3.4e-05 Score=45.11 Aligned_cols=299 Identities=12% Similarity=0.047 Sum_probs=118.8 Q ss_pred CeEEEEee----eC--CE------EEEeeeee-cCcc-ceeeeeecCCCceEEEee--cCCCCCCc-eeeCCccEEEEec Q lcl|Aclame:pro 1 MFEQVYRI----EN--GR------ARLGKLAW-RPPR-TISRFDVAPDGGLVAIEQ--WGVFGKAT-VRIPVDRLVVFVN 63 (355) Q Consensus 1 V~Eivw~~----~~--g~------~~~~~l~~-r~~~-~i~~f~~~~~g~l~~~~q--~~~~g~~~-~~ip~~k~i~~~~ 63 (355) +..++|+. ++ +. +..+-|.. .+-+ .+..|+++.+|.-..... ....|... -.|| |+++ + T Consensus 173 L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g~~~~~~~~~~~~~g~~~l~~IP---fv~~-~ 248 (491) T protein:vir:95 173 VTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEGGAQEEVVEIYPDLGESLRGVIP---FTFI-G 248 (491) T ss_pred eeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCCcceeeeeeeeecCCCcccCeeE---EEEE-e Confidence 22222211 11 11 11111110 0000 112344444443222111 01111111 1233 2322 2 Q ss_pred CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 64 EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA 143 (355) Q Consensus 64 ~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~ 143 (355) ....+-..+.+.|..++..-+---....+.-..+..-+.|+|++.+.-...... ..... ...++- T Consensus 249 ~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~~~G~d~~~~~~-------------~~~~~--~~~i~~ 313 (491) T protein:vir:95 249 ATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGDNLTPQS-------------FKEAN--PNGIKF 313 (491) T ss_pred cCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCcccCcch-------------hhccC--cceeEe Confidence 223344445555555543321111122222233333345777766532211100 00000 012344 Q ss_pred CCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 GEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIAD 223 (355) Q Consensus 144 G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~ 223 (355) |+.+++.+|.+.+..++++++++.. ++.++-...+ ...+|-.|...+...+++-+ .....-...++.+.+..+++ T Consensus 314 g~~~~~~lP~~~~~~~ie~~~~~~~-~~~l~~~e~q--m~~~Ga~l~~~~~~~Ta~~~--~~~~~~~~S~L~~~a~~~e~ 388 (491) T protein:vir:95 314 GSRCGHNLGYGGSAQLIQAGENNLA-RQNMLDKEQQ--AIQIGAQLITPSQQITAESA--RIQRGADTSVMATIARNVSQ 388 (491) T ss_pred cCcCCcCCCCCCccceeecCcchHH-HHHHHHHHHH--HHHHHHHhccCCcchhHHHH--HHHHHHhhHHHHHHHHHHHH Confidence 7788899999999999999876654 3333333333 23344444322222233322 23344446677888899999 Q ss_pred HHHHHHHHHHHHhCCCCcccccEEEecC--C-CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccc Q lcl|Aclame:pro 224 VTQQHVVEDLVDQNWGPEEPAPRLVPAQ--L-GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADA 300 (355) Q Consensus 224 ~ln~~li~~l~~lNf~~~~~~P~~~~~~--~-~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~ 300 (355) .+++ ++.+++.+-.-....-+.|.+.. . ..-+.....++-++.+.|.+.. .....++ ++.||+++..++ .... T Consensus 389 al~~-~l~~~a~w~G~~~~~~v~i~~n~dF~~~~~~~~~~~all~~~~~G~is~-~t~~~~L-~~~~vl~~~~e~-~~~~ 464 (491) T protein:vir:95 389 AYTD-ALRWVAMMLGKPEDSEVEFQLNMDFFLQPMTAQDRAAWMADINAGLLPA-TAYYAAL-RKAGVTDWTDED-ILNA 464 (491) T ss_pred HHHH-HHHHHHHHcCCCCCCceEEEeecccccccCCHHHHHHHHHHHhcCCCCH-HHHHHHH-HhCCCCCccHHH-HHHH Confidence 9975 88999888542222233454332 1 1222334556666777886542 2222233 556887543322 2211 Q ss_pred cccccCCccccccccccccccCCcccCccccc Q lcl|Aclame:pro 301 AAAKAAGRRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) ... .+.+....+. +.++....+...+. T Consensus 465 ie~-~~~~~~~~~~----~~~~~~~~~~~~~~ 491 (491) T protein:vir:95 465 IED-APLPSGAVTQ----VAGEIPQAAQQQQE 491 (491) T ss_pred HHh-cCCCCCcccc----ccccchhhhhhccC Confidence 111 1111110000 00010000000001 No 164 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=97.64 E-value=3.4e-05 Score=45.08 Aligned_cols=315 Identities=12% Similarity=-0.002 Sum_probs=122.6 Q ss_pred CeEEEEee-----eCCEEEEe-----ee--eecCccc----eeeeeecCCCceEEEee-------cCCCCC---Ccee-- Q lcl|Aclame:pro 1 MFEQVYRI-----ENGRARLG-----KL--AWRPPRT----ISRFDVAPDGGLVAIEQ-------WGVFGK---ATVR-- 52 (355) Q Consensus 1 V~Eivw~~-----~~g~~~~~-----~l--~~r~~~~----i~~f~~~~~g~l~~~~q-------~~~~g~---~~~~-- 52 (355) .|++||.. ..|...+. .+ .+.++.+ +-.++++..+...+++. ....+. ...+ T Consensus 123 af~~v~~~~~~~d~~g~~~i~~~~p~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 202 (479) T protein:vir:99 123 AFIKVTSGISPLDGTTVARIKCIDPRDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHD 202 (479) T ss_pred eEEEEecCCCCcCCCCceEEEEechhheEEEecCCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccC Confidence 78888841 12332221 11 1112111 00111111211111100 011111 0111 Q ss_pred eCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHH Q lcl|Aclame:pro 53 IPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKE 132 (355) Q Consensus 53 ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~ 132 (355) ++.--++.|.++.+. .++|.|.+..+....=-=...+.......+.|..+..+++|-........+.. T Consensus 203 ~g~vPvv~f~n~~~~-~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~----------- 270 (479) T protein:vir:99 203 YGHIPFVRYVNVMDL-RGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEGANADQE----------- 270 (479) T ss_pred CCCcceEEeecCCCc-CcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccccccchh----------- Confidence 222225667777665 46899988775543333344566667788888888777776432221111100 Q ss_pred HHHHHHHHHhcCCceeEEccCCceEEEeccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 133 EGLQLAKEFRAGEAAGGYIPHGANFTLTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 133 ~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) ... +. + ..++...+.+.++.+... +...|...++.+-.+|+....-+.-..+..++ .|...-.....-.. T Consensus 271 -~~~----~~-~--~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~~~n-~Sg~Al~~~~~~l~ 341 (479) T protein:vir:99 271 -KMR----FA-Q--ESMLISQNEKASFGAIPAAPLDGLLNAYKESLLEFLALAQLPPHIAGQIVN-VAADALAAGTRQTM 341 (479) T ss_pred -ccc----cc-c--ccceeecCCCceEEEecccchHHHHHHHHHHHHHHhccCCCCHHHcccccc-hHHHHHHHHHHHHH Confidence 000 11 1 123333455566655432 23345555555555554322211111111111 22111222333333 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-c--ccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHh- Q lcl|Aclame:pro 212 GSLNAVMKHIADVTQQHVVEDLVDQNWGPEE-P--APRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARY- 286 (355) Q Consensus 212 ~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~-~--~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~- 286 (355) ...+.-.+.+...|.+ +++.++.+...... . --.+.|.... +...+.++.+.+|+.+|... .+.+.+.+ T Consensus 342 ~ka~~~~~~f~~al~~-~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is-----~et~l~~l~ 415 (479) T protein:vir:99 342 QKLFEKQATWKASHNQ-TMRLVNKIEGRTEEATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIP-----AEGVWDMIP 415 (479) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCC-----HHHHHHhcC Confidence 4444455566666754 66665555432211 1 1234454443 35678899999999998633 34555555 Q ss_pred CCCCCCCccc-----cccc---cccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchH Q lcl|Aclame:pro 287 GLPAPAERDD-----GADA---AAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPA 347 (355) Q Consensus 287 glp~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355) |+..++-+.. ...+ ..... .+...+....... .+.....++. ...+..+..+..++ T Consensus 416 gv~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~ 479 (479) T protein:vir:99 416 NLDQSTVNGWKEIYDREGDFGKYMRKL-QNGPDPAEQRGGP--NGATNMQQAN--NKTGEPASLNKSGA 479 (479) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-hcccCcccccCCC--CCCCCCCCCC--CCCcchhccCCCCC Confidence 8864431110 0000 00000 0000000000000 0000000000 11112233333333 No 165 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=97.61 E-value=3.8e-05 Score=44.82 Aligned_cols=295 Identities=12% Similarity=0.054 Sum_probs=128.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee---------------eeeecCC----------CceEEEeecCCCCC--Cceee Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS---------------RFDVAPD----------GGLVAIEQWGVFGK--ATVRI 53 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~---------------~f~~~~~----------g~l~~~~q~~~~g~--~~~~i 53 (355) .+++||.-.+|...+.-+ +|+.+. ++..+.+ +++..+.+.+.... +..+. T Consensus 124 ~~~~v~~d~~g~~~i~~~---~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~ 200 (453) T protein:vir:39 124 AFELLYQNEETQTNVIYN---TPENMFMVYDDTIKQEPLFAVRYGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPN 200 (453) T ss_pred EEEEEEecCCCceEEEEE---cccceEEEecCCCCCeEEEEEEEEEeCCeEEEEEEEeCCeEEEEEecCCceeeeccccc Confidence 777777655554332211 111110 1111111 11111221111000 01111 Q ss_pred CCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHH Q lcl|Aclame:pro 54 PVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQK 131 (355) Q Consensus 54 p~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~ 131 (355) +... ++.|. +++.|.|.+..+....=--...+..++..++.|..|+.+++|...+. .+ T Consensus 201 ~~g~vPvv~~~-----n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g~~~~~---~~------------ 260 (453) T protein:vir:39 201 PFDDLPVVEFY-----FNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEE---ED------------ 260 (453) T ss_pred CCCceeEEEec-----CCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCCCc---hh------------ Confidence 1111 22222 36779999987666655566677888888998877777766542211 11 Q ss_pred HHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 132 EEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 132 ~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) ...+..+..-.-......+.+.++++++...+...++..++.+.+.|...-.+..++.++-++.+.-|+. ....-.. T Consensus 261 --~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~-~~~~~l~ 337 (453) T protein:vir:39 261 --LKNIRSNRVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESFGSSSGVSLA-YKLQAMS 337 (453) T ss_pred --hhhhhhcceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccCChHHHHH-HHHHHHH Confidence 0011100000000011123567788888777777889999999999988765555544322221112221 1222223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCcc--cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHh Q lcl|Aclame:pro 212 GSLNAVMKHIADVTQQHVVEDLVDQN-W-GPEE--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARY 286 (355) Q Consensus 212 ~~~~ad~~~i~~~ln~~li~~l~~lN-f-~~~~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~ 286 (355) .....-.+.+...+.+ +++.++.+. . +... .-..+.|....+ +..+.++.+.+|. |+ ++ .+.+.+.+ T Consensus 338 ~ka~~~~~~~~~~l~~-~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl~--g~-is----~et~l~~l 409 (453) T protein:vir:39 338 NLALSFQRKFQSSLNS-RYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDIKEQAETANILM--GI-TS----QETALSVI 409 (453) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC----hHHHHHhC Confidence 3334444555666643 555555442 1 1111 122566665554 5678888888884 54 33 46777888 Q ss_pred CC-CCCCCccccccccccccCCccccccccccccccCCcccCcc Q lcl|Aclame:pro 287 GL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPR 329 (355) Q Consensus 287 gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (355) +. +.+..+-+...........................+....+ T Consensus 410 ~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e 453 (453) T protein:vir:39 410 SVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPETNEE 453 (453) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcCCC Confidence 64 32221111100000000000000011111111111111111 No 166 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=97.59 E-value=4.1e-05 Score=44.64 Aligned_cols=302 Identities=12% Similarity=0.010 Sum_probs=127.0 Q ss_pred CeEEEEe-eeCCEEEEeeeeecCcccee----------------eeeecCCCceEEE-eecCCCC--------CCceeeC Q lcl|Aclame:pro 1 MFEQVYR-IENGRARLGKLAWRPPRTIS----------------RFDVAPDGGLVAI-EQWGVFG--------KATVRIP 54 (355) Q Consensus 1 V~Eivw~-~~~g~~~~~~l~~r~~~~i~----------------~f~~~~~g~l~~~-~q~~~~g--------~~~~~ip 54 (355) +.=+.|. .++|.-++-+|..+++..|. =+++|..|+.+.+ -.....| .+.+.+| T Consensus 134 f~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvp 213 (495) T protein:vir:10 134 FVIKKPRPLSEGLSVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIK 213 (495) T ss_pred EEEEeecccCCCCccceEEEEechhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeec Confidence 2334453 33443333334444444332 2456666664322 1111222 1335688 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEee-cCCCCccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQG-APLPEAIARDTARAEQWLNDQKEE 133 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~-~~~~~~~~~d~~~~e~~~~~~~~~ 133 (355) ...++ |.+..+.+..-|.++|.++...-.+..+.- ..++.. |-..-+...+. ..+...........+. +. T Consensus 214 A~~vl-H~f~~r~gQ~RGis~la~i~~l~~l~~y~d-ael~~a-~i~A~~~~fi~~~~~~~~~~~~~~~~~~------~~ 284 (495) T protein:vir:10 214 AEHVL-HVTVLTVRSDAGAPWFQLLLRLNELDQYED-AELVRK-KTAALFAAFIQEATADSTGGPTIGQPKR------SK 284 (495) T ss_pred hhheE-eccccCCCcccCcchhHHHHHHHHhhHHHH-HHHHHH-HHhhhheeeeecCCCccccccccCcccc------cc Confidence 77655 556667888889998876543322222211 111111 11122222222 2111111000000000 00 Q ss_pred HHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhh--hhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 134 GLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 134 l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) -.....++ +......++.|.+|++++++..+.+|..|++..-+.|+..+.-. .||.+. .+.||+..-.-..-+. T Consensus 285 ~~~~~~~l--~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~--s~~nYSS~R~~~~e~~ 360 (495) T protein:vir:10 285 GGKRITGL--NPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDL--RGVNYSSIRAGLLEFR 360 (495) T ss_pred Ccccceec--CCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHHHHHHHHHHH Confidence 00111223 33457788999999999988888999999999999999997554 344332 2345654433333333 Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH---hC----CCC---c-cccc--EEEecCCCc-cHHHHHHHHHHHHhCCCcccch Q lcl|Aclame:pro 212 GSLNAVMK-HIADVTQQHVVEDLVD---QN----WGP---E-EPAP--RLVPAQLGK-EQPVTAEAIRALVECGAFTADP 276 (355) Q Consensus 212 ~~~~ad~~-~i~~~ln~~li~~l~~---lN----f~~---~-~~~P--~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~ 276 (355) ..++.... ++...+.+-+..++++ ++ .+. . ..+. .|....-.. |-.+-+++....+++|+..... T Consensus 361 r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~ 440 (495) T protein:vir:10 361 RLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISD 440 (495) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHH Confidence 34444432 3444443434443333 22 111 0 0111 122111111 3344456666777777654211 Q ss_pred h----------------hHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 277 E----------------LEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 277 ~----------------~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) . .+....+++||+-..+. . ...++.+.. .+..+.....+ T Consensus 441 ~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~p--------~---------~~~~~~~~~--~~~~~~~~~~e 495 (495) T protein:vir:10 441 KQAERGYDMEELFDMISDANQLIDEYDLRLDSDP--------R---------YVNGSGAEQ--KSVMEAALNNE 495 (495) T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCC--------C---------cCCCccCCC--CCCCCCCCCCC Confidence 0 01222344455321100 0 000000000 00001111111 No 167 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=97.58 E-value=4.2e-05 Score=44.58 Aligned_cols=292 Identities=8% Similarity=-0.069 Sum_probs=131.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCC--CceE-----------------------EEeecCC--CCC---Cc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPD--GGLV-----------------------AIEQWGV--FGK---AT 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~--g~l~-----------------------~~~q~~~--~g~---~~ 50 (355) +++++|.-++|.....- .+|+... ..+++. ++++ .+..... .+. +. T Consensus 106 a~~~~~~d~~~~~~i~~---~~p~~~~-~~~d~~~~~~~~~~i~~~~~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~ 181 (440) T protein:vir:95 106 AYEYHFRDKDKVDRVVL---ISPLEMF-VIRDLTVEQNIIAAVHLPIYADKVNMTVYTKDKVITYKPYSNNSVRLVVDDV 181 (440) T ss_pred EEEEEEecCCCceEEEE---EcccceE-EEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEecCCccceeecce Confidence 78888866666543322 2222221 112221 1111 1111000 000 11 Q ss_pred eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 51 VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 51 ~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) .+.|..+ ++.|+ +|..|.|.+..+....---...+..++..++.|..++.+++|......... +... T Consensus 182 ~~~~~g~vPvv~~~-----n~~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~--e~~~---- 250 (440) T protein:vir:95 182 KKHSYNDVPVVEWW-----NNRFRMGDYESEISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLSP--EDAA---- 250 (440) T ss_pred eeccCceeeEEEee-----CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCCc--cchh---- Confidence 1122121 12222 356788988887776666666778888999988888888887533221111 1111 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS 208 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~ 208 (355) ...+...-.+. ..........+.++++++.......+...++.+.+.|...-....++.++-++ +++.+... T Consensus 251 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~----n~Sg~Al~ 322 (440) T protein:vir:95 251 KMKDANMLFLK----TGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRFNS----TSSGIALL 322 (440) T ss_pred hhhhccceecc----cccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccc----cchHHHHH Confidence 01111000000 00111122445678888877777778999999999998887666655432211 11222222 Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHh---CCCCc--ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhh Q lcl|Aclame:pro 209 FFTG----SLNAVMKHIADVTQQHVVEDLVDQ---NWGPE--EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPEL 278 (355) Q Consensus 209 v~~~----~~~ad~~~i~~~ln~~li~~l~~l---Nf~~~--~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~ 278 (355) .... .+..-.+.+...+. ++++.++.+ ..+.. .....+.|....+ +..+.++.+.+| .|+ ++ T Consensus 323 ~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl--~g~-iS---- 394 (440) T protein:vir:95 323 YKMIGLEQVRKDKETYFTKALR-RRYELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIKAYIEA--GGE-IS---- 394 (440) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHHHHHHH--hcc-Cc---- Confidence 2222 22333344455553 355554432 22222 1234677766554 567888888888 454 33 Q ss_pred HHHHHHHhCCCCCCCcccc-ccccccccCCccccccccccccccCCcccCcccc Q lcl|Aclame:pro 279 EKDLRARYGLPAPAERDDG-ADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRAD 331 (355) Q Consensus 279 ~~~~~e~~glp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (355) .+.+.++++.-.+..+.+. ..+...... ......+ ..+.....++ T Consensus 395 ~et~~~~l~~~d~~~E~~ri~~E~~~~~~-~~~~~~~-------~~~~~~~~~e 440 (440) T protein:vir:95 395 QETLMENASFTDYKTEHSRILKQGGSSDL-EIGQIVG-------DADVGQADTE 440 (440) T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhh-hHHhhcc-------CCCCCCcCCC Confidence 3566677765332211111 111111000 0000000 0001111111 No 168 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=97.58 E-value=4.2e-05 Score=44.58 Aligned_cols=317 Identities=11% Similarity=-0.006 Sum_probs=118.1 Q ss_pred CeEEEEeee-CCE--EEEeeeeec-CccceeeeeecCCCceEEEeecCCCC------CCc--eeeCCccEEEEecCCCCC Q lcl|Aclame:pro 1 MFEQVYRIE-NGR--ARLGKLAWR-PPRTISRFDVAPDGGLVAIEQWGVFG------KAT--VRIPVDRLVVFVNEREGA 68 (355) Q Consensus 1 V~Eivw~~~-~g~--~~~~~l~~r-~~~~i~~f~~~~~g~l~~~~q~~~~g------~~~--~~ip~~k~i~~~~~~~~~ 68 (355) ++ .+|... .+. ..+.-...+ ....+.++.+=..+.+..+...+... .+. ..++.--++.|.++.+.+ T Consensus 138 ~~-~i~D~~~~~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~ 216 (480) T protein:vir:78 138 MY-AELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLG 216 (480) T ss_pred eE-EEEcCCCccceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccC Confidence 22 333211 110 000000000 00000011100111222222211100 011 112222356678888889 Q ss_pred ccccchhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 69 NWLGQSLLRQ-AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAA 147 (355) Q Consensus 69 ~p~G~~ll~~-~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~ 147 (355) .++|.|-+.. +-...=-=...+...+..+|.|..+..+++|-....... +... ..+..+ + . T Consensus 217 ~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~-~~~~---------~~~~~~------~-~- 278 (480) T protein:vir:78 217 NRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTN-DGEN---------TTLDIY------Y-G- 278 (480) T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCcccccc-cccc---------chhhhh------h-h- Confidence 9999987754 322111112344556777888877766665432111111 0000 001000 1 1 Q ss_pred eEEccCCceEEEeccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 GGYIPHGANFTLTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDK-STGSYALGDTFASFFTGSLNAVMKHIADVT 225 (355) Q Consensus 148 ~~v~p~~~~ie~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~-~~GS~Al~~vh~~v~~~~~~ad~~~i~~~l 225 (355) .+....+.+.++.+... +...|...++.+-.+|+..---+.-..++.+ +.+|...-.....-+....+.-.+.+...| T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l 358 (480) T protein:vir:78 279 RILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAW 358 (480) T ss_pred hhccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 12222344566665443 2233444444444444332111100111100 001211112223333444455555666666 Q ss_pred HHHHHHHHHHhCCCCc-ccc--cEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccc--cc Q lcl|Aclame:pro 226 QQHVVEDLVDQNWGPE-EPA--PRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDG--AD 299 (355) Q Consensus 226 n~~li~~l~~lNf~~~-~~~--P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~--~~ 299 (355) .+ +++.++.++.... ..+ -++.|.... ....+.++.+.+|+.+|..+. +.+.+++.+|+.+....+.. .. T Consensus 359 ~~-~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~---s~et~~~~lg~~~d~~~e~~~~~~ 434 (480) T protein:vir:78 359 ER-AMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPI---PKEQARIDLGYTATQREQMRDWDK 434 (480) T ss_pred HH-HHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCC---CHHHHHhcCCCCHhHHHHHHHHHH Confidence 54 6677776664322 111 245665444 466788999999998885433 35778899998643221100 00 Q ss_pred ccc-----cccCCccccccccccccccCCcccCccccchhHHHHHhHh Q lcl|Aclame:pro 300 AAA-----AKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRR 342 (355) Q Consensus 300 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (355) +.. .......+......+...++.+..+..+.... ++.+.+ T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 480 (480) T protein:vir:78 435 QETEDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSGF--NRTKTR 480 (480) T ss_pred HHHHHHHHHhhccccCCCccccCCCCCCCCCccCCCcccC--CCcCCC Confidence 000 00000000000011111111111111111111 111111 No 169 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=97.58 E-value=4.2e-05 Score=44.56 Aligned_cols=303 Identities=12% Similarity=-0.010 Sum_probs=133.1 Q ss_pred CeEE-EEeeeC----------------------------------CEEEEeeeeecCcccee--eeeecCCCceEEEeec Q lcl|Aclame:pro 1 MFEQ-VYRIEN----------------------------------GRARLGKLAWRPPRTIS--RFDVAPDGGLVAIEQW 43 (355) Q Consensus 1 V~Ei-vw~~~~----------------------------------g~~~~~~l~~r~~~~i~--~f~~~~~g~l~~~~q~ 43 (355) ||=. .|..-+ -.|.+.++..++-..++ .|++-.+|..+- . T Consensus 167 v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~l~---~ 243 (527) T protein:vir:10 167 VYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEE---P 243 (527) T ss_pred EEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccccccchhhhhhhcCceeee---c Confidence 2110 132111 11111111111000000 011111111110 0 Q ss_pred CCCCCCceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhH Q lcl|Aclame:pro 44 GVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARA 123 (355) Q Consensus 44 ~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~ 123 (355) .+. +|..==+++|...+..+..||.|-|..+.-...--+....+....++-. |.|++..+.-+... .+ + T Consensus 244 lp~-----pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~s--G~Pi~~~tg~~~vd-~~---G 312 (527) T protein:vir:10 244 LPE-----QITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFG--GLGFYATDSAPPRD-SR---G 312 (527) T ss_pred ccC-----CCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHh--CCceeeeccccccc-cc---C Confidence 111 1111113567777889999999999998888877777777777788743 55654443222111 00 1 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc--cCCccchhh Q lcl|Aclame:pro 124 EQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG--GDKSTGSYA 201 (355) Q Consensus 124 e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~--~~~~~GS~A 201 (355) +. ..+..|..+..=+|++.++..++...+...|...++++.++|+..---+-.-++ ..++.-|.. T Consensus 313 ~~-------------~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ 379 (527) T protein:vir:10 313 NM-------------VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) T ss_pred Cc-------------CccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHH Confidence 00 001123333444889999999987777788999999999998887655544332 111111222 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---hCCCCcc--cccEEEecCCCc-cHHHHHHHHHHHHhCC Q lcl|Aclame:pro 202 LGDTFASFFTGSLNAVMKHIADVTQQHV-----VEDLVD---QNWGPEE--PAPRLVPAQLGK-EQPVTAEAIRALVECG 270 (355) Q Consensus 202 l~~vh~~v~~~~~~ad~~~i~~~ln~~l-----i~~l~~---lNf~~~~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G 270 (355) .=+....-...........+..+. ++. +.||-. +-+-... ..-++.|...-+ +.++..+.+.+|+.+| T Consensus 380 ALeL~L~PLlar~~rk~L~~~~Vq-rq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aG 458 (527) T protein:vir:10 380 ALDLKLSAILSSCAEQELELKSVL-KQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAG 458 (527) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcC Confidence 222333333333333332233332 221 223222 1221111 112788887766 6678889999999999 Q ss_pred CcccchhhHHHHHHHh----CCCCCCCccccccccccccCCccccccc-cccccccCCcc---cCccccchhHH Q lcl|Aclame:pro 271 AFTADPELEKDLRARY----GLPAPAERDDGADAAAAKAAGRRRAKRL-PGQRQGAALPS---RSPRADPPRRR 336 (355) Q Consensus 271 ~~~~~~~~~~~~~e~~----glp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~ 336 (355) ++.. ....+++ |+..++.+-....+..+.++-....... -+...++...- .......+..- T Consensus 459 iiS~-----etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 459 LIPA-----KKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred chhH-----HHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCCC Confidence 8653 3444444 6655444321111111111111111110 11111111100 00011111110 No 170 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=97.56 E-value=4.5e-05 Score=44.39 Aligned_cols=303 Identities=12% Similarity=-0.009 Sum_probs=133.0 Q ss_pred CeEE-EEeeeC----------------------------------CEEEEeeeeecCcccee--eeeecCCCceEEEeec Q lcl|Aclame:pro 1 MFEQ-VYRIEN----------------------------------GRARLGKLAWRPPRTIS--RFDVAPDGGLVAIEQW 43 (355) Q Consensus 1 V~Ei-vw~~~~----------------------------------g~~~~~~l~~r~~~~i~--~f~~~~~g~l~~~~q~ 43 (355) ||=. .|..-+ -.|.+.++..++-..++ .|++-.+|..+- . T Consensus 167 v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~l~---~ 243 (527) T protein:vir:10 167 VYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEE---P 243 (527) T ss_pred EEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccccccchhhhhhhcCceeee---c Confidence 2110 132111 11111111111000000 011111111110 0 Q ss_pred CCCCCCceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhH Q lcl|Aclame:pro 44 GVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARA 123 (355) Q Consensus 44 ~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~ 123 (355) .+. +|..==+++|...+..+..||.|-|..+.-...--+....+....++-. |.|++..+.-+... .+ + T Consensus 244 lp~-----pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~s--G~Pi~~~tg~~~vd-~~---G 312 (527) T protein:vir:10 244 LPE-----QITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFG--GLGFYATDSAPPRD-SR---G 312 (527) T ss_pred ccC-----CCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHh--CCceeeeccccccc-cc---C Confidence 111 1111113567777889999999999998888877777777777788743 55654443222111 00 1 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc--cCCccchhh Q lcl|Aclame:pro 124 EQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG--GDKSTGSYA 201 (355) Q Consensus 124 e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~--~~~~~GS~A 201 (355) +. ..+..|..+..=+|++.++..++...+...|...++++.++|+..---+-.-++ ..++.-|.. T Consensus 313 ~~-------------~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ 379 (527) T protein:vir:10 313 NM-------------VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) T ss_pred Cc-------------CccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHH Confidence 00 001123333444889999999987777788999999999998887655544332 111111222 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---hCCCCcc--cccEEEecCCCc-cHHHHHHHHHHHHhCC Q lcl|Aclame:pro 202 LGDTFASFFTGSLNAVMKHIADVTQQHV-----VEDLVD---QNWGPEE--PAPRLVPAQLGK-EQPVTAEAIRALVECG 270 (355) Q Consensus 202 l~~vh~~v~~~~~~ad~~~i~~~ln~~l-----i~~l~~---lNf~~~~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G 270 (355) .=+....-...........+..+. ++. +.||-. +-+-... ..-++.|...-+ +.++..+.+.+|+.+| T Consensus 380 ALeL~L~PLlar~~rk~L~~~~vq-rq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aG 458 (527) T protein:vir:10 380 ALDLKLSAILSSCAEQELELKSVL-KQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLLQLWEAG 458 (527) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcC Confidence 222333333333333332233332 221 223222 1221111 122788887766 6678889999999999 Q ss_pred CcccchhhHHHHHHHh----CCCCCCCccccccccccccCCccccccc-cccccccCCcc---cCccccchhHH Q lcl|Aclame:pro 271 AFTADPELEKDLRARY----GLPAPAERDDGADAAAAKAAGRRRAKRL-PGQRQGAALPS---RSPRADPPRRR 336 (355) Q Consensus 271 ~~~~~~~~~~~~~e~~----glp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~ 336 (355) ++.. ....+++ |+..++.+-+...+..+.++-....... -+...++...- .......+..- T Consensus 459 i~S~-----~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 459 LIPA-----KKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred chhH-----HHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCCC Confidence 8653 3444444 6655444321111111111111111110 11111111100 00011111100 No 171 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=97.55 E-value=4.6e-05 Score=44.34 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=109.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) ..|++-... | .+..|.+.|+.+++. ..+. ++..++.. .| ....+++..+|+++.-......||.+.+..+. T Consensus 117 y~~~~rn~~-G--~~~~L~pl~~~~v~~-~~~~-~~~~~~~~---~~-~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~ 187 (351) T protein:vir:78 117 YLERRRNMV-G--GTLRLEPALAKYVRR-KADF-SGFVYVNG---WQ-ERHEFAPDSVFQLVRPDINQEVYGLPEYLSSL 187 (351) T ss_pred EEEEEECCC-C--CEEEEEEecCcceEE-eeeC-CeEEEEec---CC-eEEEEccccEEEEcCCCCCCCcccccHHHHHH Confidence 566665432 3 467788888887643 3332 33333321 22 34568888888776554457889999988888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEe-ecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc-CCce--eEEcc---- Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQ-GAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA-GEAA--GGYIP---- 152 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~-~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~-G~~~--~~v~p---- 152 (355) .....-.....+-..|.. +| +.|-++ ...++..+. +..+.+++.+++..+ |+.. .+..| T Consensus 188 ~si~l~~~a~~~~~~~f~-NG-a~pggIl~~~~~~ls~-----------e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~ 254 (351) T protein:vir:78 188 HSAWLNESSTLFRRKYYE-NG-SHAGFILYMTDAAQKQ-----------DDVDNMRDALKNAKGPGNFRNVFMYAPGGKK 254 (351) T ss_pred HHHHHHHHHHHHHHHHHh-cc-CCCceEEEecCCCCCH-----------HHHHHHHHHHHHhcCcccccceeeecCCCCc Confidence 877665555555455554 33 344332 222222111 122334444444332 2222 22233 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFT-GSLNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~-~~~~ad~~~i~~~ln~~li 230 (355) .|++++-++.......|.+.-++-..+|+.+...+--.++ .++++++++-.+-...++. .-+.-.++.|++ +|. T Consensus 255 ~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~--- 330 (351) T protein:vir:78 255 DGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LND--- 330 (351) T ss_pred cceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHh--- Confidence 3455555554555556888889999999999887643332 1223344443332222222 222333333332 222 Q ss_pred HHHHHhCCCCcccccEEEecCCC--c-cHHH Q lcl|Aclame:pro 231 EDLVDQNWGPEEPAPRLVPAQLG--K-EQPV 258 (355) Q Consensus 231 ~~l~~lNf~~~~~~P~~~~~~~~--~-d~~~ 258 (355) +| +. . .|+|+..+ . |.++ T Consensus 331 -~l------~~-~--~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 331 -WL------GD-E--VVRFDDYEIPPAPVAA 351 (351) T ss_pred -hc------Cc-c--ceecChhhhccccccC Confidence 11 11 1 24444321 1 1111 No 172 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=97.55 E-value=4.6e-05 Score=44.34 Aligned_cols=295 Identities=13% Similarity=0.056 Sum_probs=120.6 Q ss_pred CeEEEEee--eCCEEEEeeeeecC------------------------cc--ceeeeeecCCCc----e---------EE Q lcl|Aclame:pro 1 MFEQVYRI--ENGRARLGKLAWRP------------------------PR--TISRFDVAPDGG----L---------VA 39 (355) Q Consensus 1 V~Eivw~~--~~g~~~~~~l~~r~------------------------~~--~i~~f~~~~~g~----l---------~~ 39 (355) -.=|-|+. .+|+-.+..+..|- .- ..+.|...+.+. - .. T Consensus 158 ~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~ 237 (501) T protein:vir:95 158 TEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIPKGNYQQYVV 237 (501) T ss_pred hhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceecCCcccccce Confidence 00011211 12221111111110 00 011122111110 0 00 Q ss_pred EeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHH-HHHHHHHHHhcCCceEEeecCCCCcccc Q lcl|Aclame:pro 40 IEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFL-RIQALVGERNGLGVPIYQGAPLPEAIAR 118 (355) Q Consensus 40 ~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~-~~w~~~~Er~~~g~p~~~~~~~~~~~~~ 118 (355) +......+...-.|| |+++..... +--.+.+.|..++.. -.+++.. .+.-..+..-+.|+|++.+......+.. T Consensus 238 ~~~~~~g~~~l~~IP---fv~~~~~~~-~~~~~~pPLl~lA~l-ni~hy~~ssd~~~~l~~~~~P~l~i~G~~~~~~~~~ 312 (501) T protein:vir:95 238 YKPTDAQGKRLTEIP---FMFIGSENN-DSNPDNPNFYDLASL-NMAHYRNSADYEESCYIVGQPTPVLIGLTEEWVTNV 312 (501) T ss_pred eeeeccCCCcCCeee---EEEEecCCC-CCCCCccchHHHHHH-HHHHHhhhhHHHHHHHHcccceeeeeCCcccccccC Confidence 000000111111244 333322222 222233334444422 2222222 2233334334567777765432111000 Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcccc-CCcc Q lcl|Aclame:pro 119 DTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGG-DKST 197 (355) Q Consensus 119 d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~-~~~~ 197 (355) .. ..++-|+.+++.+|++.++.+++.++++- .+..++....+|.. +|-.|...+ ...+ T Consensus 313 ~~------------------~~i~~G~~~~~~lP~~~~~~~ie~~~~~i-~~~~l~~l~~~m~~--~Ga~ll~~~~~~~T 371 (501) T protein:vir:95 313 LK------------------GSVNFGSRGGIPLPVGADAKLLQASENTM-LKEAMDTKERQMVA--LGAKLVEQKEVQRT 371 (501) T ss_pred CC------------------CceeecccccccCCCCCceeEEecChhhH-HHHHHHHHHHHHHH--HHHhhccCCccchh Confidence 00 11334888899999999999999877553 35667766667644 344432221 1123 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecC--CC-ccHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 198 GSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTA 274 (355) Q Consensus 198 GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~--~~-~d~~~~ae~~~~l~~~G~~~~ 274 (355) ++-+ .....-...++...+..+++.+++ ++.+++++-.-.+. -++|.+.. .. ..+...++++.++.+.|.+.. T Consensus 372 a~~~--~~~~~~~~S~L~~~a~~le~al~~-~l~~~a~w~g~~~~-~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~ 447 (501) T protein:vir:95 372 ATEA--ELEAASEGSTLSSATKNVSAAFEW-ALKWAARWVGQADS-GVKFELNTDFDIARMTPDERRSLVEEWQKGAITF 447 (501) T ss_pred HHHH--HHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCC-ceEEEEecccccccCCHHHHHHHHHHHhCCCCcH Confidence 3322 233444455778888899999975 88988887542222 24555432 11 223455677788888897542 Q ss_pred chhhHHHHHHHhCCCCCCCcccccc---ccccccCCccccccccccccccCCcccCc Q lcl|Aclame:pro 275 DPELEKDLRARYGLPAPAERDDGAD---AAAAKAAGRRRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 275 ~~~~~~~~~e~~glp~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355) .....++ .+.|++.+...++... ......+ .......+....+++.=...+ T Consensus 448 -~t~~~~L-~~~~v~~~~~~~e~e~i~~~~~~~~~-~~~~~~~~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 448 -EEMRTGL-RKAGVATEDDSKAKEKIAKDTAEAMA-LATPANVPGDGSGGDNVGNSE 501 (501) T ss_pred -HHHHHHH-HhCCCCChhHHHHHHHHHhhhcCccc-ccccCCCCCCCcccccccCCC Confidence 2122233 5568876543321110 0000000 001111112222211101111 No 173 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=97.54 E-value=4.9e-05 Score=44.23 Aligned_cols=308 Identities=8% Similarity=-0.031 Sum_probs=115.6 Q ss_pred CeE------EEEeeeCCEEEEeeeeecC----------------ccceeeeeecC-----CCceEEEeecCC--CCCCce Q lcl|Aclame:pro 1 MFE------QVYRIENGRARLGKLAWRP----------------PRTISRFDVAP-----DGGLVAIEQWGV--FGKATV 51 (355) Q Consensus 1 V~E------ivw~~~~g~~~~~~l~~r~----------------~~~i~~f~~~~-----~g~l~~~~q~~~--~g~~~~ 51 (355) |.| .+............|.+.. +.+|...-|.. -|+.+.+.+-+. ...... T Consensus 162 ~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~ 241 (522) T protein:vir:47 162 VSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLEPVT 241 (522) T ss_pred eEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCCCce Confidence 222 1111111111111121110 11121111110 022111111100 000000 Q ss_pred eeCC-cc--EEEEe----cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHH Q lcl|Aclame:pro 52 RIPV-DR--LVVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAE 124 (355) Q Consensus 52 ~ip~-~k--~i~~~----~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e 124 (355) .++. .+ |++++ ++...++|+|.|.+..|....-.-...+..|..-.+. | -..+.. +...-....+....+ T Consensus 242 ~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g-~~~i~v-~~~~l~~~~~~~~g~ 318 (522) T protein:vir:47 242 VFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRM-G-QRRVIV-PEHLTQRQYQRPDGT 318 (522) T ss_pred EeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHh-c-cceeec-chHHhccCCCCCCcc Confidence 1111 11 33332 2334578999999999987765555555555544441 1 122222 110000000000000 Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeEEcc----CCceEEEeccCCCcccHHHHHHHHHHHHHHHH-hhh-hhccccCCccc Q lcl|Aclame:pro 125 QWLNDQKEEGLQLAKEFRAGEAAGGYIP----HGANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LAH-FLTLGGDKSTG 198 (355) Q Consensus 125 ~~~~~~~~~l~~~~~~~~~G~~~~~v~p----~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~i-lgq-tlt~~~~~~~G 198 (355) ... . .-+..+...+..++ .+..|+.+...-....|...++.+-+.|...+ +++ +++. +++ | T Consensus 319 ~~~------~----~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~--~~~-~ 385 (522) T protein:vir:47 319 IDF------R----PRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTF--DGQ-G 385 (522) T ss_pred ccc------c----cccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCc--ccc-c Confidence 000 0 00000001111111 11223333333333446666666666655543 332 3332 222 3 Q ss_pred hhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCC-cccccEEEecCC-CccHHHHHHHHHHHH Q lcl|Aclame:pro 199 SYALGDTF--ASFFTGSLNAVMKHIADVTQQHVVEDLVDQ-------NWGP-EEPAPRLVPAQL-GKEQPVTAEAIRALV 267 (355) Q Consensus 199 S~Al~~vh--~~v~~~~~~ad~~~i~~~ln~~li~~l~~l-------Nf~~-~~~~P~~~~~~~-~~d~~~~ae~~~~l~ 267 (355) ...+.++. ..-....+.+-.+.+...|. +|+..|+.+ |... ....+.+.|+.. ..|.++.++.+.+++ T Consensus 386 ~kTAtEi~s~~~~~~~t~~~~~~~~~~al~-~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v 464 (522) T protein:vir:47 386 MKTATEIVSENSDTYQMRSSIVALVEQSIK-ELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMV 464 (522) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHH Confidence 23334442 22233345666677777774 577776643 2222 222356777764 456678889999999 Q ss_pred hCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchhH Q lcl|Aclame:pro 268 ECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRR 335 (355) Q Consensus 268 ~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (355) .+|+.. .+.++.+.||+.+.+-.++...-.....+. .+......+.+.+...+..++ . T Consensus 465 ~aG~~s----~e~~i~~~~g~~eeea~~el~ri~~E~~~~----~~~~~~~~~~~~~~~~~~d~~--~ 522 (522) T protein:vir:47 465 AAGFST----KKRAIGKTLNISGVEAEKELNAINSELLPM----NDAELAIYGMHDQNEEKADDK--G 522 (522) T ss_pred hcCCCC----HHHHHHhcCCCChHHHHHHHHHHHHhhccC----CCCCCCCCCCCCcccccCCCC--C Confidence 999755 267889999986532222111111111110 000000000111111111111 1 No 174 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=97.54 E-value=4.9e-05 Score=44.21 Aligned_cols=306 Identities=8% Similarity=-0.068 Sum_probs=130.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceEE----Eeec---------------------CCCCC---Cc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLVA----IEQW---------------------GVFGK---AT 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~~----~~q~---------------------~~~g~---~~ 50 (355) .++++|.-.+|.+.+.. .+|+... ..+++ .++++. ++.. ...+. .. T Consensus 153 a~~~v~~dedg~~~i~~---~~p~~~~-~v~d~~~~~~~~~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~ 228 (501) T protein:vir:96 153 AYEVIYRSEYDETRIKR---LSPLETF-VIYDNSLEDNSIAAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISV 228 (501) T ss_pred EEEEEEEcCCCceEEEE---EccceeE-EEEcCCCCCceEEEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccc Confidence 77888866666544332 2222221 11121 122111 0000 00000 00 Q ss_pred eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 51 VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 51 ~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) .+.+..+ ++.| ..|+.|.|.+..+-...=.-...+..++..++.|..++.+++|......... ... T Consensus 229 ~~~~~g~vPvv~~-----~nn~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~-~~~------ 296 (501) T protein:vir:96 229 TTHAFGTVPITEY-----LNNIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQ-ASD------ 296 (501) T ss_pred cccCCCccceEEe-----cCCccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccc-hhh------ Confidence 1111111 2222 2477899999886555544556778888888988888888776533221110 000 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS 208 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~ 208 (355) ... .. ++ .+. ...+.-....+.+++++....+...++.+++.+.+.|...-....++.++-++..|...-+.... T Consensus 297 -~~~-~~-~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~ 371 (501) T protein:vir:96 297 -MKR-TR-LM-QLK-PPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDTNFSGNTSGEALKYKLF 371 (501) T ss_pred -hhh-cC-ee-eec-ccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHH Confidence 000 00 00 000 00111113345678888877777789999999999998876666554432211111111111112 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---CCCcc--cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHH Q lcl|Aclame:pro 209 FFTGSLNAVMKHIADVTQQHVVEDLVDQ-N---WGPEE--PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKD 281 (355) Q Consensus 209 v~~~~~~ad~~~i~~~ln~~li~~l~~l-N---f~~~~--~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~ 281 (355) -.......-.+.+...|.+ +++.++.+ + .+... .-.++.|....+ +..+.++.+.+|. |+ ++ .+. T Consensus 372 ~l~~ka~~~~~~~~~~l~~-~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~--g~-iS----~et 443 (501) T protein:vir:96 372 GLDQDRVDTQSQFTKGLKR-RYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLG--GQ-VS----QET 443 (501) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-Cc----hHH Confidence 2223333344555555543 55554432 1 11111 123577766555 5678888888885 64 33 356 Q ss_pred HHHHhCC-CCCCCcccccc-cccccc--CCccccccccccccccCCcccCccccchhHH Q lcl|Aclame:pro 282 LRARYGL-PAPAERDDGAD-AAAAKA--AGRRRAKRLPGQRQGAALPSRSPRADPPRRR 336 (355) Q Consensus 282 ~~e~~gl-p~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (355) +.+.++. ..|..+-+... +..... ..........+..........+...++ ... T Consensus 444 ~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~-~~~ 501 (501) T protein:vir:96 444 ALSLSGLVESPNEELDKINKEMSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFER-EYE 501 (501) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHhhccccccchhhcccccCCcCCCCCCCcccc-ccC Confidence 6666654 32221111110 000000 000110111111110100001111111 000 No 175 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=97.53 E-value=4.9e-05 Score=44.19 Aligned_cols=280 Identities=10% Similarity=0.020 Sum_probs=133.4 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceE-----------------------------EEeecCCCCC- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLV-----------------------------AIEQWGVFGK- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~-----------------------------~~~q~~~~g~- 48 (355) .++++|--++|.+...-+ +|...- ..+++ .+.++ .+++.+.... T Consensus 122 a~~~~y~d~~~~~~~~~~---~p~~~~-~v~d~~~~~~~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~ 197 (470) T protein:vir:10 122 AWLHYWIDEDGNFRYGII---QPDQIT-PIYATTLDNKLLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTV 197 (470) T ss_pred eEEEEEecCCCceEEEEE---cccceE-EEEcCCCCCceEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCccee Confidence 788888656665443322 111110 11111 11111 1111100000 Q ss_pred ---------------------CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 49 ---------------------ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVP 105 (355) Q Consensus 49 ---------------------~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p 105 (355) ...+.+..+ ++.|+ .|..|.|.+..+-...=--...+.+++..++.|+-|+. T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l 272 (470) T protein:vir:10 198 IEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFS-----KNKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVIL 272 (470) T ss_pred ccccccccccccccccccccccccccCCCeeeEEEee-----cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcce Confidence 000000001 12222 36678999998766665567778889999999988888 Q ss_pred EEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccC-----CceEEEeccCCCcccHHHHHHHHHHHH Q lcl|Aclame:pro 106 IYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPH-----GANFTLTGVQGKLPEMDGPIRYHDEQI 180 (355) Q Consensus 106 ~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~-----~~~ie~~~~~g~~~~~~~~i~~~d~~I 180 (355) ++++-.+.... +...++.. ...+.++. +.++++++...+...++..++++.+.| T Consensus 273 vl~g~~~~~~~-------------------~~~~~~~~--~~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I 331 (470) T protein:vir:10 273 VLTNYGGADLH-------------------QFMNDLRK--YKSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNI 331 (470) T ss_pred eeecCCccccc-------------------hhhhhhhh--cCeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHH Confidence 87765332110 11112211 22344443 467889988887788999999999999 Q ss_pred HHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-hCCCC-cccccEEEecCCCc Q lcl|Aclame:pro 181 ARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVM----KHIADVTQQHVVEDLVD-QNWGP-EEPAPRLVPAQLGK 254 (355) Q Consensus 181 sk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~----~~i~~~ln~~li~~l~~-lNf~~-~~~~P~~~~~~~~~ 254 (355) .+.-.+..++..+. | +++.+........+...| +.+...|. ++++.++. +|... ......+.|....+ T Consensus 332 ~~~s~~p~~~~~~~---g--n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~-~~~~~i~~~l~~~~~d~~~i~i~f~~~~p 405 (470) T protein:vir:10 332 FLFGQGIDPANFES---S--NASGVAIKMLYSHLELKAAKTQTYFEHAIN-ELVRAIMRYLNFSDADKRHISQHWTRTKV 405 (470) T ss_pred HHHhCCCCCCcccc---c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCcccceeeEEeccCCC Confidence 98877776654321 2 223333333333333333 34444553 35555544 34321 11234567765555 Q ss_pred -cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCC-CCCCCcccccc-ccccccCCccccccccccccccCCccc Q lcl|Aclame:pro 255 -EQPVTAEAIRALVECGAFTADPELEKDLRARYGL-PAPAERDDGAD-AAAAKAAGRRRAKRLPGQRQGAALPSR 326 (355) Q Consensus 255 -d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (355) +..+.++.+.++ .|. ++ .+.+.+.++. ..+..+-+... +.....+.........+... .+.. T Consensus 406 ~d~~e~~~~~~~~--~g~-iS----~et~l~~~p~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~---dde~ 470 (470) T protein:vir:10 406 EDSLTKAQIVSTV--ANY-SS----KEAVAKANPIVDDWQQELKDLAKDKEENDPYSNQADELNGKGV---NDEQ 470 (470) T ss_pred CCHHHHHHHHHHH--hcc-Cc----HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccCCCCC---CCCC Confidence 667888888887 354 33 4567777764 32221111110 11111111111111111111 0000 No 176 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=97.46 E-value=6.2e-05 Score=43.66 Aligned_cols=324 Identities=12% Similarity=0.091 Sum_probs=135.2 Q ss_pred CeEEEE--eeeCC-------------EEEEeeeeecCcccee-----eeeecC----CCceEEEeecCCCCCCceeeCCc Q lcl|Aclame:pro 1 MFEQVY--RIENG-------------RARLGKLAWRPPRTIS-----RFDVAP----DGGLVAIEQWGVFGKATVRIPVD 56 (355) Q Consensus 1 V~Eivw--~~~~g-------------~~~~~~l~~r~~~~i~-----~f~~~~----~g~l~~~~q~~~~g~~~~~ip~~ 56 (355) ..=++. +.+|+ .-.++.|...+|.++. .+..|. .|+-..+. . .+..+-+. T Consensus 209 ga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~---I---~g~~IH~S 282 (862) T protein:vir:99 209 IRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWI---I---SGQKYHRS 282 (862) T ss_pred ceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeee---e---cCeeeccc Confidence 011111 00111 0012233333332221 111111 12221111 1 12245566 Q ss_pred cEEEEecCC------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHH Q lcl|Aclame:pro 57 RLVVFVNER------EGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQ 130 (355) Q Consensus 57 k~i~~~~~~------~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~ 130 (355) ++|.+.... ...+++|.|+|..+|....--......-...+.++ .+.+++.+.- ....+ +. .. T Consensus 283 Rliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka--~l~v~ktd~l--~~l~~----ed---~l 351 (862) T protein:vir:99 283 HLIIARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNK--RTTAIHTDTA--KAIAN----ED---KF 351 (862) T ss_pred eeEEecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHh--ccceeechhH--hhhcc----HH---HH Confidence 666664332 34567899999999987765555555556677776 3555543221 11111 11 11 Q ss_pred HHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH Q lcl|Aclame:pro 131 KEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF 210 (355) Q Consensus 131 ~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~ 210 (355) .+.+ +++..++ ++.+.+++..+.+++.++.+- .+...+++..-.+||-+.--+..-+-+.+-.|-.|-|+-...++ T Consensus 352 ~~r~-~~~~~~r-dN~Gi~liD~eEe~e~ls~sl--SGL~dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nY 427 (862) T protein:vir:99 352 IQRL-MFWVRYR-DNHAVKVLGTDETMEQFDTSL--ADFDAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISY 427 (862) T ss_pred HHHH-HHHHhcc-CcceeEEecCCCceeEEeccc--CChHHHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHH Confidence 1111 2222222 445678899998999886543 34566777777788887655533222222245566677777888 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccHH-------HHHHHHHHHHhCCCcccchhhHHH Q lcl|Aclame:pro 211 TGSLNAVMK-HIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQP-------VTAEAIRALVECGAFTADPELEKD 281 (355) Q Consensus 211 ~~~~~ad~~-~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~~-------~~ae~~~~l~~~G~~~~~~~~~~~ 281 (355) -+.+++... .|...|++ |+..+ .+=++.... -.|+|.... .+.+ ..+++++++++.|++.+ +. T Consensus 428 yD~I~s~QE~~L~P~Ler-L~~li-~~~lg~~~d-~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvisp-----dE 499 (862) T protein:vir:99 428 HEELESIQEHVYMPFLQR-HYLIS-RLSLGIQHE-IDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISP-----DE 499 (862) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-HHhcCCCCc-ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCH-----HH Confidence 888888764 45666654 54433 322332111 255665432 2333 34567788999997653 45 Q ss_pred HHHHh------CCCCCCCccccccccccccCCccccccccccc----------cccCCc------ccCccccchhHH--- Q lcl|Aclame:pro 282 LRARY------GLPAPAERDDGADAAAAKAAGRRRAKRLPGQR----------QGAALP------SRSPRADPPRRR--- 336 (355) Q Consensus 282 ~~e~~------glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~~~~~~~~~~~--- 336 (355) +|+++ |++.-.+++....+ .....+......++.. .++... +..|.++....- T Consensus 500 vR~~L~~~~~~g~~~l~ded~E~d~--~~~~e~~~~~e~~g~a~~~ap~de~~aga~~~~~e~d~~~~p~~~~~~~g~~~ 577 (862) T protein:vir:99 500 ERNRIRDDKRSGYNRLTKEDAEETP--GASPENLAAYQKAGAAQETASAKETQAGAAVTTAEGDQPNVQMVPSMKPGQMV 577 (862) T ss_pred HHHHHHhcCCcCCCCCCcccccccC--CCCcccccccccCCcccccccccccccccCCccccCCcccccccCCCCCCCcc Confidence 55543 33311111100000 0000000000000000 000000 000000000000 Q ss_pred --------------HHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 337 --------------GPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 337 --------------~~~~~~~~~~~~~~~~~~~ 355 (355) +....-....+..+-+|=| T Consensus 578 ~~t~~~~a~~p~~~~~~~~~~~~~~e~~~~~~~ 610 (862) T protein:vir:99 578 GPEVGITAPMPEDDAPVAGVVAKLAELQQAQMG 610 (862) T ss_pred ccccccccCCCccccccCcccccchhhhcCcch Confidence 0000000011111111111 No 177 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=97.43 E-value=6.8e-05 Score=43.42 Aligned_cols=319 Identities=12% Similarity=0.023 Sum_probs=118.7 Q ss_pred CeEEEEeee-CCEEEEeeeee---c-CccceeeeeecCCCceEEEeecCCCC------CCc--eeeCCccEEEEecCCCC Q lcl|Aclame:pro 1 MFEQVYRIE-NGRARLGKLAW---R-PPRTISRFDVAPDGGLVAIEQWGVFG------KAT--VRIPVDRLVVFVNEREG 67 (355) Q Consensus 1 V~Eivw~~~-~g~~~~~~l~~---r-~~~~i~~f~~~~~g~l~~~~q~~~~g------~~~--~~ip~~k~i~~~~~~~~ 67 (355) ++ .+|... .+... ..+.. + .-..+.++.+=..+.+..++..+... .+. ..++.--++.|+++... T Consensus 138 ~~-~~~D~~~~~~~~-~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~ 215 (480) T protein:vir:78 138 MY-AELDPRNTRRVT-RAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRL 215 (480) T ss_pred eE-EEEcCCCccceE-EEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeeccccc Confidence 11 233211 11110 00100 0 00000111110112222222211100 011 11233335778888888 Q ss_pred CccccchhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 68 ANWLGQSLLRQ-AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA 146 (355) Q Consensus 68 ~~p~G~~ll~~-~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~ 146 (355) +.|+|.|-+.. +-...=-=...+..++...|.|+.+..+++|-........ . . ....... + . T Consensus 216 ~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~--~-~--------~~~~~~~-----~-~ 278 (480) T protein:vir:78 216 GNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTND--G-E--------NTTLDIY-----Y-G 278 (480) T ss_pred CCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccc--c-c--------cchhhhh-----h-h Confidence 99999988764 3222111244566778888888777666654321111110 0 0 0000000 1 1 Q ss_pred eeEEccCCceEEEeccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 AGGYIPHGANFTLTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDK-STGSYALGDTFASFFTGSLNAVMKHIADV 224 (355) Q Consensus 147 ~~~v~p~~~~ie~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~-~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ 224 (355) . +....|.+.++.+... +...|...++.+-.+|+...--+.-..++.+ +.+|-..-.....-.....+.-.+.+... T Consensus 279 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~~~l~~ka~~~~~~f~~~ 357 (480) T protein:vir:78 279 R-ILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGA 357 (480) T ss_pred h-hccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 1222344566665443 2334555555555555432211111111110 00111111122233333334444555566 Q ss_pred HHHHHHHHHHHhCCCC-ccccc--EEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccc--c Q lcl|Aclame:pro 225 TQQHVVEDLVDQNWGP-EEPAP--RLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDG--A 298 (355) Q Consensus 225 ln~~li~~l~~lNf~~-~~~~P--~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~--~ 298 (355) |.+ +++.++.+.... ...+. .++|.... +...+.++.+.+|+.+|..+. +.+.+++.+|+.+....+.. . T Consensus 358 l~~-~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~---s~et~~~~lg~~~d~~~~~~~~~ 433 (480) T protein:vir:78 358 WER-AMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPI---PKEQARIDLGYTATQREQMRDWD 433 (480) T ss_pred HHH-HHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccC---CHHHHHhcCCCCHhHHHHHHHHH Confidence 654 666666665422 12222 34555444 466788999999998874332 35678888988532211100 0 Q ss_pred cccccccCCccccccccccccc--cCCcccCccccchhHHHHHhHhhh Q lcl|Aclame:pro 299 DAAAAKAAGRRRAKRLPGQRQG--AALPSRSPRADPPRRRGPLRRRPR 344 (355) Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 344 (355) .+.... +........++.... .+.....+...+....+.-+..++ T Consensus 434 ~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480) T protein:vir:78 434 KQETED-MIDTLYSTTKAQADATPKPTVTETKTETQTSPSGFNRTKTR 480 (480) T ss_pred HHHHHH-HHHHhhccccccCCCCCCCCCCCCCCccccccCCCCcccCC Confidence 000000 000000000000000 000000111111111111111111 No 178 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=97.35 E-value=8.7e-05 Score=42.85 Aligned_cols=303 Identities=12% Similarity=0.017 Sum_probs=120.6 Q ss_pred CeEEEE-eeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVY-RIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw-~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) .+-..| ..+++......+. -+-. +.+|. ..+|+...... .+. .++.--++.|+++.+.+.++|.|-+... T Consensus 168 ~~~~~~~~~~~~~~~~~~~y-~~~~-~~~~~-~~~~~~~~~~~-~~h-----~~g~vPvv~f~n~~~~~~~~G~s~i~~~ 238 (488) T protein:vir:23 168 YAIRAIYGADGNEIVSATLY-LPDT-TMTWL-RAEGEWEAPTS-TPH-----GLEMVPVIPISNRTRLSDLYGTSEISPE 238 (488) T ss_pred EEEEEEEecCCCcEEEEEEE-ecCc-EEEEE-ecCCceEeccc-ccc-----CCCCcceEEeccccccCCcCCccchhhh Confidence 111111 1122222211111 1111 22222 22333222111 111 1112224778888888999999877543 Q ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 80 YKNWL-LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 80 ~~~~~-~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) ..... -=...+..++...+-|..+..+++|-........+.. . ..+. ..+.+...++++|.+.+ T Consensus 239 v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~-~--------~~~~------~~~~~~v~~~~~g~~~~ 303 (488) T protein:vir:23 239 LRSVTDAAAQILMNMQGTANLMAIPQRLIFGAKPEELGINAET-G--------QRMF------DAYMARILAFEGGEGAH 303 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCCCcccccccccc-c--------chhh------hhhhhhhccCCCCCCce Confidence 22221 1233455667777777777666665322211111110 0 0011 11223456677787777 Q ss_pred EeccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 159 LTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDK-STGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) Q Consensus 159 ~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~-~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l 236 (355) +.+... +...|...++-+-.+|+...--+.-..++.+ +.+|...-.....-+....+.-.+.+...|.+ +++.++.+ T Consensus 304 ~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~-~~~l~~~~ 382 (488) T protein:vir:23 304 AEQFSAAELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKKVERKNKIFGGAWEQ-AMRLAYKM 382 (488) T ss_pred eEecCCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH Confidence 776443 2233444444444444422111111111110 11121111222333333444455556666643 66666555 Q ss_pred CCCCc--cc--ccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcc-ccc-cccc-----c- Q lcl|Aclame:pro 237 NWGPE--EP--APRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERD-DGA-DAAA-----A- 303 (355) Q Consensus 237 Nf~~~--~~--~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~-~~~-~~~~-----~- 303 (355) .-+.. .. --++.|..... ...+.++.+.+|++.|..+. +.+.+++.+|+-.....+ +.. .... . T Consensus 383 ~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~---s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~~~ 459 (488) T protein:vir:23 383 VKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLI---PRERGWVDMGYTIVEREQMRQWLEQDQKQGLGLI 459 (488) T ss_pred hcCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccC---CHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH Confidence 32221 11 12456655444 56788999999999884322 246788999874322111 000 0000 0 Q ss_pred -ccCCccccccccccccccCCcccCccccchhH Q lcl|Aclame:pro 304 -KAAGRRRAKRLPGQRQGAALPSRSPRADPPRR 335 (355) Q Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (355) ...........++....+. ...+ ++..+ T Consensus 460 ~~~~~~~~~~~~~~~~~~~~--~~~~--e~~~a 488 (488) T protein:vir:23 460 GSLYGASTPEGKPGEAPVGE--PPAP--EPDAA 488 (488) T ss_pred HHHhccCCCcccCCCCCCCC--CCCC--CCCCC Confidence 0000111111111111111 1111 11111 No 179 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=97.33 E-value=9.4e-05 Score=42.66 Aligned_cols=294 Identities=12% Similarity=0.050 Sum_probs=130.6 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccce---------------eeeeecCCCce----------EEEeecCCCCC--Cceee Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTI---------------SRFDVAPDGGL----------VAIEQWGVFGK--ATVRI 53 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i---------------~~f~~~~~g~l----------~~~~q~~~~g~--~~~~i 53 (355) +++++|.-++|......+ +|... .++..+.++.. ..++....... ...+. T Consensus 124 ~~~~v~~d~~~~~~i~~~---~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~ 200 (453) T protein:vir:73 124 AYELMYQNESTESEVIYC---SPLNVFMVYDDSIKQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAGEVKFGESTYN 200 (453) T ss_pred EEEEEEeCCCCceEEEEE---cccceEEEEeCCCCceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCCceEEccceec Confidence 777777655554433221 11111 01112222221 11111110000 01111 Q ss_pred CCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHH Q lcl|Aclame:pro 54 PVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQK 131 (355) Q Consensus 54 p~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~ 131 (355) +..+ ++.|+ .|+.|.|.+..+-...=--...+..++..++.|..|..+++|...+..... ... T Consensus 201 ~~g~vPvv~~~-----n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~------- 265 (453) T protein:vir:73 201 VYSDLPIVEYN-----FNEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFLGAEVDEEDAK---NIK------- 265 (453) T ss_pred cCCceeEEEec-----CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCCCchhhh---ccc------- Confidence 1111 22222 467788988876555444455678888889998887777766433221111 000 Q ss_pred HHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 132 EEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 132 ~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) .. .+..-.....++....+.+.++++++...+...++..++.+.+.|...-.+..++.++.++.+.-|+ +....-.. T Consensus 266 ~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al-~~~~~~l~ 342 (453) T protein:vir:73 266 DN--RLINFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAANISDENFGNSSGVAL-AYKLQAMS 342 (453) T ss_pred cc--ccccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccccCccHHHH-HHHHHHHH Confidence 00 0000000112233455677889999877777889999999999998876666665433211111111 11122222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-c--ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHh Q lcl|Aclame:pro 212 GSLNAVMKHIADVTQQHVVEDLVDQ-NWGP-E--EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARY 286 (355) Q Consensus 212 ~~~~ad~~~i~~~ln~~li~~l~~l-Nf~~-~--~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~ 286 (355) .....-.+.+...|. ++++.++.+ +... . ..-..+.|....+ +..+.++.+.+++ |+ ++ .+.+.+.+ T Consensus 343 ~ka~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--gi-is----~et~~~~~ 414 (453) T protein:vir:73 343 NLALSFQRKFQSALN-RRYSLWSSLSTNASNKDAWKDIEYTFTRNEPKDIKEQAETANILK--GI-TS----EETALSVI 414 (453) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHHh--cc-Cc----HHHHHHhC Confidence 233334445555554 355555544 2221 1 1223667765554 5678888888886 64 33 35566666 Q ss_pred CC-CCCCCccccc-cccccccCCccccccccccccccCC Q lcl|Aclame:pro 287 GL-PAPAERDDGA-DAAAAKAAGRRRAKRLPGQRQGAAL 323 (355) Q Consensus 287 gl-p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (355) +. +.+..+-+.. .+....................++. T Consensus 415 ~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 453 (453) T protein:vir:73 415 SVIPDVQAEMEKIKKKKLLQLSLTRTSNLVRMKQMRGNL 453 (453) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhccCCcchhhhcCC Confidence 55 3222110100 0000000000000000000000010 No 180 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=97.24 E-value=5.6e-05 Score=43.89 Aligned_cols=140 Identities=10% Similarity=-0.060 Sum_probs=86.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecC--CCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWG--VFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~--~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) ..+++.... | .+..|.+.||.+++ ...+.+|++.+..+.. ..+.....++++.+|++++... +..+|.|.+.. T Consensus 110 y~~i~r~~~-G--~~~~L~~i~~~~v~-v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~diiH~r~~~~-dg~~G~spi~~ 184 (251) T protein:vir:46 110 YIEITRDKT-G--EPMNLTFRKTSEIE-LKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL-DGINGLSLLDT 184 (251) T ss_pred EEEEEECCC-C--cEEEEEEECCceEE-EEECCCCcEEEEEEEeccCCcceeEEECCccEEEecCcCC-CCeeecCHHHH Confidence 566665433 3 37889999998885 5667788876544321 1222346789999998887654 45799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANF 157 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~i 157 (355) +....-......++...+...- +.|-++.++... ..+++ ..+.+++......+|.+-+..++.||+- T Consensus 185 ~~~~i~~~~~~~~~~~~~f~ng--~~p~gil~~~~~--l~~~e--------~~~~~~~~~~~~~~g~~n~g~~~~gm~~ 251 (251) T protein:vir:46 185 LSRTIESDNNGKDFLNNFLRNG--THAGGILKMKGV--LDNKK--------ARDRAREEFPKVLVELNKLGKLSYSMNQ 251 (251) T ss_pred HHHHHHHHHHHHHHHHHHHHcc--CCCcEEEEeCCC--CCCHH--------HHHHHHHHHHHHhcCcccccccccccCC Confidence 9998888888888888888753 344333333211 11111 1223444444444554434456667775 No 181 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=97.23 E-value=0.00012 Score=42.03 Aligned_cols=304 Identities=13% Similarity=0.064 Sum_probs=115.1 Q ss_pred CeEEEEeee-CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIE-NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~-~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) .+-.+|..+ ++...-.. .+.+-.++ +|. ..+|+...... .+.+.. .+| ++.|.++.+.+.|+|.|-+... T Consensus 162 ~a~~~~~~~~~~~~~~~~-~y~~~~~~-~~~-~~~~~~~~~~~-~~~~~g--~vP---vv~f~N~~~~~~~~G~s~i~~~ 232 (484) T protein:vir:77 162 RAIRAIEDEEGNEVIGAT-LYLPNNTV-IWN-REDGQWVQVAN-VAHNLE--MVP---VIPIPNRTRLSDLYGTTEITPE 232 (484) T ss_pred EEEEEEEeecCCcEEEEE-EEecCeEE-EEE-ecCCceEeecc-ccCCCC--Ccc---eEEeccccccCccCCcccchHH Confidence 111112111 11111111 11221111 221 22333222211 111111 123 4778888889999999877643 Q ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 80 YKNWL-LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 80 ~~~~~-~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) ..... -=...+.+++..+|-|+.+..+++|-........+ .... .+ +..+.+...++|. .+.+ T Consensus 233 v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~-~~~~--------~~------~~~~~~~~~~~~~-~~~~ 296 (484) T protein:vir:77 233 LRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGVDP-ETGQ--------TL------FDAYLARILAFED-HESK 296 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhcccc-cccc--------hh------hhhhhhhhcccCC-CCce Confidence 32221 12345566777888777776666653222111111 1000 00 1111222333442 2444 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhc---cccCC-ccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLT---LGGDK-STGS-YALGDTFASFFTGSLNAVMKHIADVTQQHVVEDL 233 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt---~~~~~-~~GS-~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l 233 (355) +.+... .+...++++++.-|.+......++ .++.+ +.+| -|+ .....-+....+.-.+.+...|.+ +++.+ T Consensus 297 ~~q~~~--~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al-~~~~~~l~~ka~~k~~~f~~~l~~-~~~l~ 372 (484) T protein:vir:77 297 AQQFSA--AELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAI-RSSESRLVKTVERKNKIFGGAWEQ-AMRVA 372 (484) T ss_pred eEeecC--CChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH Confidence 444322 233444555544444332221111 11110 1012 122 222333333444445556666643 55555 Q ss_pred HHhCCCCc--cc--ccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccc-cc-cc---ccc Q lcl|Aclame:pro 234 VDQNWGPE--EP--APRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD-GA-DA---AAA 303 (355) Q Consensus 234 ~~lNf~~~--~~--~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~-~~-~~---~~~ 303 (355) +.+--+.. .. --.+.|..... ...+.++.+.+|+++|.-+. +.+.+++.+|+-+....+- .. .+ ... T Consensus 373 ~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~---s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~ 449 (484) T protein:vir:77 373 YKVMNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVI---PKERARIDMGYSITEREEMRKWDEEEQAQGL 449 (484) T ss_pred HHHhCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCC---CHHHHHhcCCCChhHHHHHHHHHHHHHHHHH Confidence 54422211 11 12456655443 56788999999999885332 2467888888854322210 00 00 000 Q ss_pred ccCCc--cccccccccccccCCcccCccccchhHHH Q lcl|Aclame:pro 304 KAAGR--RRAKRLPGQRQGAALPSRSPRADPPRRRG 337 (355) Q Consensus 304 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (355) ..... ...+...+.....+.+...|.+..... + T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 484 (484) T protein:vir:77 450 GLMGTMFGTDPSGGGNPDNPETPEPQPNPAEEAA-A 484 (484) T ss_pred HHHhhhccccccCCCCCCCCCcccccCCCccccC-C Confidence 00000 000000011100010011111111111 0 No 182 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=97.19 E-value=0.00014 Score=41.77 Aligned_cols=294 Identities=11% Similarity=-0.028 Sum_probs=128.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEE---------------------------------EeecCCCC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVA---------------------------------IEQWGVFG 47 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~---------------------------------~~q~~~~g 47 (355) .+|++|.-++|.+....+ +|+.+ ...+++.+.+.. +++..... T Consensus 133 ay~~~y~de~~~~~~~~i---~p~~~-~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~ 208 (537) T protein:vir:78 133 EGIFARTTSEGKLKFQTV---DGLTL-IPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGV 208 (537) T ss_pred eEEEeeecCCCceEEEEE---cccee-EEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcc Confidence 778888666665544332 22222 112233332211 11000000 Q ss_pred ----------------------------------CCceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 48 ----------------------------------KATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLR 91 (355) Q Consensus 48 ----------------------------------~~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~ 91 (355) ....+.+..+ ++.| ..|..|.|.+..+-...=.-...+. T Consensus 209 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~f-----~nn~~~~sd~e~v~~LiDayd~~~S 283 (537) T protein:vir:78 209 STTYKLDEAYNPNPAPHVLAIEESTDADFEDTDGYQVLGRSYSKFPFQLL-----YNNKDGMSDVKRVKSIIDDYDVMNC 283 (537) T ss_pred cccccccccccccccceeeeccccccccccccccccccccCCcceeEEEe-----ccCccCCCchhhhHHHHHHHHHHHH Confidence 0000001111 1111 1366788888887666655556777 Q ss_pred HHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHH Q lcl|Aclame:pro 92 IQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDG 171 (355) Q Consensus 92 ~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~ 171 (355) +.+..++.|.-++.++++--+. +. .+...+++ +..+..+-.++.+++++........++. T Consensus 284 ~~an~~~~~~~~ilvi~g~~~~-----~~--------------~~~~~~l~-~~~~i~v~~d~~~v~~l~~~~~~~~~e~ 343 (537) T protein:vir:78 284 FLSNNLQDFSEAIYVVKGFSGD-----ST--------------DKLRQNIK-AKKMIGVNGDNAGMEIQTVSIPYEARKA 343 (537) T ss_pred hhhhHHHHhcCceeeeecCCCc-----cc--------------hhHHHHHh-hcCceeecCCCCceeEEEecCCHHHHHH Confidence 8888899998888787764221 10 01112222 1122223346788999988877788889 Q ss_pred HHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh---CCCCc--c Q lcl|Aclame:pro 172 PIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVM----KHIADVTQQHVVEDLVDQ---NWGPE--E 242 (355) Q Consensus 172 ~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~----~~i~~~ln~~li~~l~~l---Nf~~~--~ 242 (355) +++++.+.|.+.-.+... .. .++| .++.+............| +.+...|.+ ++..++.+ ..... . T Consensus 344 ~ld~L~~~I~~~s~~~~~-~~--~~~g--n~SGvAlk~~~~~l~~ka~~ke~~f~~~l~~-~~~~i~~~~~~~~~~~~d~ 417 (537) T protein:vir:78 344 KMDIDVENIYRSGMGFNS-TA--VGDG--NVTNVVIKSRYTLLAMKARKMETSLRKVLRW-CADMVVSDIALRGLGEYDS 417 (537) T ss_pred HHHHHHHHHHHhcCCCCC-cc--cccc--CCcHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCccccc Confidence 999999999876433332 11 1222 223344444433333333 334444433 33444332 22111 1 Q ss_pred cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC---------------------cccccc- Q lcl|Aclame:pro 243 PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE---------------------RDDGAD- 299 (355) Q Consensus 243 ~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~---------------------~~~~~~- 299 (355) ....+.|...-+ +..+.++.+.+|.+.|+.. .+.+.+.+++-...+ +.+... T Consensus 418 ~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS-----~eT~l~~~p~vdd~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~ 492 (537) T protein:vir:78 418 NDICFEIEPHVLANELDIATTRKTEAETEALK-----IGNIMTVAPRIGDDETLKLIAEELDLDYNELKDALAEQDAQSL 492 (537) T ss_pred ceeeEEeccCCCCCHHHHHHHHHHHHhcCcch-----HHHHHHhCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhccccc Confidence 234677765555 5678899999999888643 334444444321100 000000 Q ss_pred ---ccccc--cC--Cc-cccc--cccccccccCCcccCccccchh Q lcl|Aclame:pro 300 ---AAAAK--AA--GR-RRAK--RLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 300 ---~~~~~--~~--~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 334 (355) +.... .+ .+ .+.+ ...+.+....+++..|.+-+.. T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:78 493 DVSPDVQAMLDGLPVNANQPPVDPNQPVADPNVVPPTDPNAVPQT 537 (537) T ss_pred CcCcchhhhcCCCCCCCCCCCCCccCCCCCCCCCCCCCCccCCCC Confidence 00000 00 00 0000 0000000000111111111111 No 183 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=97.13 E-value=0.00016 Score=41.40 Aligned_cols=302 Identities=13% Similarity=0.040 Sum_probs=119.8 Q ss_pred CeEEEEeee---------------CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCC Q lcl|Aclame:pro 1 MFEQVYRIE---------------NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNER 65 (355) Q Consensus 1 V~Eivw~~~---------------~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~ 65 (355) ++ .+|..+ ++...-..+ +-+-.++ +| +..+|+...... ...+++.-=++.|.++. T Consensus 150 ~~-~i~D~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~-~~-~~~~~~~~~~~~------~~h~~g~vPvv~f~n~~ 219 (485) T protein:vir:24 150 MY-AEIDPRIGRPAKAIRVAYDAEGNEIQAATL-YTPNETF-GW-FRAEGEWVEWFS------DPHGLGAVPVVPLPNRT 219 (485) T ss_pred eE-EEeeCCcCceeEEEEEEEeecCCeEEEEEE-EcCCcEE-EE-EecCCceEeecc------cccCCCcccEEEeccCc Confidence 11 233221 111111111 1111111 11 112233222111 11122222246688888 Q ss_pred CCCccccchhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 66 EGANWLGQSLLRQAYKNWL-LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG 144 (355) Q Consensus 66 ~~~~p~G~~ll~~~~~~~~-~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G 144 (355) +.+.|+|.|-+.......+ .-...+...+...+-|+.+..+++|.........+... ..+ +..+ T Consensus 220 ~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~------------~~~---~~~~ 284 (485) T protein:vir:24 220 RLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETG------------QTL---FDAY 284 (485) T ss_pred ccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccccccc------------cch---hhhc Confidence 8888999988764322221 12344556777888888777776654322111111110 000 0111 Q ss_pred CceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCcc----chhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 145 EAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKST----GSYALGDTFASFFTGSLNAVMKH 220 (355) Q Consensus 145 ~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~----GS~Al~~vh~~v~~~~~~ad~~~ 220 (355) ......++ +.+.++.+.. ..+...++++++.-|.+......++...=++. .|...-.....-+....+.-.+. T Consensus 285 ~~~i~~~~-~~~~~~~q~~--~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~ 361 (485) T protein:vir:24 285 LARILAFE-DAEGKIQQFS--AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAI 361 (485) T ss_pred ccceeccC-CCCceEEeec--ccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHH Confidence 12223333 3455554433 23455566666655555433322221111111 11111122333333444555566 Q ss_pred HHHHHHHHHHHHHHHh-CCCCcc---cccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcc Q lcl|Aclame:pro 221 IADVTQQHVVEDLVDQ-NWGPEE---PAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERD 295 (355) Q Consensus 221 i~~~ln~~li~~l~~l-Nf~~~~---~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~ 295 (355) +...|++ +++.++.+ |..... .--++.|.... ....+.++.+.+|+..|.... +.+.+++.+|+......+ T Consensus 362 f~~~l~~-~~~l~~~~~~~~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~---s~et~~~~l~~~~d~~~e 437 (485) T protein:vir:24 362 FGGAWEE-AMRLAYRLMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVI---PRERARKDMGYSIAEREE 437 (485) T ss_pred HHHHHHH-HHHHHHHHhcCCCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccC---CHHHHHhhCCCCHhHHHH Confidence 6666654 66665555 332211 12356675444 466788999999998874221 246778888885332111 Q ss_pred cc-----cccccccc--CCccccccccccccccCCcc--cCccccchh Q lcl|Aclame:pro 296 DG-----ADAAAAKA--AGRRRAKRLPGQRQGAALPS--RSPRADPPR 334 (355) Q Consensus 296 ~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 334 (355) .. ........ +-....+..++....+.... .++.+.+.. T Consensus 438 ~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~a 485 (485) T protein:vir:24 438 MRRWDEEEAAMGLGLLGTMVDADPTVPGSPNPTPAPKPQPAIEGGDSA 485 (485) T ss_pred HHHHHHHHhhhhhhHHHhhcccCCCCCCCCCCCCCCCCccCCCCCCCC Confidence 00 00000000 00000111111111001000 011111111 No 184 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=97.13 E-value=0.00016 Score=41.40 Aligned_cols=299 Identities=12% Similarity=0.015 Sum_probs=123.4 Q ss_pred CeEEEEeeeCCEEEEeeeeec------Cc------cc-eeeeeecC-C------------CceEEEeecCCCCC--Ccee Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR------PP------RT-ISRFDVAP-D------------GGLVAIEQWGVFGK--ATVR 52 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r------~~------~~-i~~f~~~~-~------------g~l~~~~q~~~~g~--~~~~ 52 (355) .++++|.-.+|.+.+.-+.++ ++ .. +.+|.... + +++..+.+.+.... +..+ T Consensus 142 ~~~~~~~d~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~ 221 (481) T protein:vir:10 142 AYEIVYRDFEDRDTFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVE 221 (481) T ss_pred EEEEEEeCCCCeEEEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeeccccc Confidence 666666544554333221111 00 00 11111111 1 11111221111000 0111 Q ss_pred eCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHH Q lcl|Aclame:pro 53 IPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQ 130 (355) Q Consensus 53 ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~ 130 (355) .+..+ ++.|. .|+.|.|.+..+....--=...+..++..++.|..++.++.+..... .+......... T Consensus 222 ~~~g~vPvv~~~-----n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~ 291 (481) T protein:vir:10 222 HYYNDVPIIEYL-----NDQFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDLD-----SEDAKAFRDAN 291 (481) T ss_pred ccCCceeEEEee-----cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCCC-----ccchhhhhhcc Confidence 11111 12222 35678888876444332333456677777888877666666533221 11111110000 Q ss_pred HHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH Q lcl|Aclame:pro 131 KEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF 210 (355) Q Consensus 131 ~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~ 210 (355) ++ ++..+ ........+.+++++....+...++..++.+.+.|...-.+..++.+..++..|...-+....-. T Consensus 292 ------~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l 363 (481) T protein:vir:10 292 ------MI-HLEPG-TNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQFSGVQSGESMKYKLFGL 363 (481) T ss_pred ------ce-ecccc-ccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHH Confidence 00 00000 00011223567888877777778899999999998887666655443222211211112222233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcc----cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHH Q lcl|Aclame:pro 211 TGSLNAVMKHIADVTQQHVVEDLVDQ-NWGPEE----PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRA 284 (355) Q Consensus 211 ~~~~~ad~~~i~~~ln~~li~~l~~l-Nf~~~~----~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e 284 (355) ......-.+.+...+.+ +++.++.+ |..... .-..+.|....+ +..+.++.+.+|. |+ ++ .+.+.+ T Consensus 364 ~~k~~~~~~~~~~~l~~-~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl~--g~-is----~et~~~ 435 (481) T protein:vir:10 364 EQVRAIKERLFKKGLMK-RYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMMESINAFNALS--GG-VS----ESTRLS 435 (481) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCccccceeeEEeCCCCCcCHHHHHHHHHHHh--cc-CC----hHHHHH Confidence 33444445666666753 66655543 332211 123566665444 5678888888885 54 33 355667 Q ss_pred HhCC-CCCCCccccc-ccc---ccccCCccccccccccccccCCcccCccccchhH Q lcl|Aclame:pro 285 RYGL-PAPAERDDGA-DAA---AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRR 335 (355) Q Consensus 285 ~~gl-p~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (355) .++. ..+.++-+.. .+. .+.........+.+.... ..+.+. T Consensus 436 ~l~~i~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~----------~dd~~g 481 (481) T protein:vir:10 436 LLDFIDNPKEELEKMQEEEAQREKQADKRGYGEAFENHLN----------VDDSNG 481 (481) T ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhhhhccCCccCCCCCC----------CCCCCC Confidence 7765 2222111100 000 000000000000000000 011111 No 185 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=97.02 E-value=0.0002 Score=40.81 Aligned_cols=297 Identities=9% Similarity=0.020 Sum_probs=115.8 Q ss_pred CeEEEEe----------------eeCCEEEEeeeeecC-----ccceee--eeec---CCCceEEEeecCC-----CCCC Q lcl|Aclame:pro 1 MFEQVYR----------------IENGRARLGKLAWRP-----PRTISR--FDVA---PDGGLVAIEQWGV-----FGKA 49 (355) Q Consensus 1 V~Eivw~----------------~~~g~~~~~~l~~r~-----~~~i~~--f~~~---~~g~l~~~~q~~~-----~g~~ 49 (355) |+=+.|. ..++..+-..|.++- +.+|.. |+-+ .-|....+..-.. .... T Consensus 152 ~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~ 231 (500) T protein:vir:30 152 FLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVT 231 (500) T ss_pred eEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEec Confidence 2222221 111111111111110 111111 1100 0011111100000 0001 Q ss_pred ceeeCCccEEEEe----cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHH Q lcl|Aclame:pro 50 TVRIPVDRLVVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQ 125 (355) Q Consensus 50 ~~~ip~~k~i~~~----~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~ 125 (355) +++-|. |.+++ +....++|+|.|.+..+....-.-...+..|+.-++. | ...+.. +...-....+....+- T Consensus 232 ~~~~p~--f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~-g-~~~i~v-~~~~l~~~~~~~~g~~ 306 (500) T protein:vir:30 232 DVTRPI--FTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKM-G-QRRVAV-PESLTALTVRTTDGDV 306 (500) T ss_pred cCCCcc--EEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh-C-cceeee-chHHhcccCCCCCccc Confidence 111222 33332 3345689999999999998877777777777766663 1 222222 1100000000000000 Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEEccC----CceEEEeccCCCcccHHHHHHHHHHHHHHHH-hhh-hhccccCCccch Q lcl|Aclame:pro 126 WLNDQKEEGLQLAKEFRAGEAAGGYIPH----GANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LAH-FLTLGGDKSTGS 199 (355) Q Consensus 126 ~~~~~~~~l~~~~~~~~~G~~~~~v~p~----~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~i-lgq-tlt~~~~~~~GS 199 (355) +..-. +......+..++. +..|+.+...-....|...++.+=++|+..+ +++ ++..+ ++ |. T Consensus 307 --------~~~~~--~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~--~~-g~ 373 (500) T protein:vir:30 307 --------VPRPR--FESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFD--GK-SM 373 (500) T ss_pred --------cCCcc--cCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccC--cC-cc Confidence 00000 0000111222221 1223333333233446666666666665443 232 33222 22 22 Q ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCC----cccccEEEecCC-CccHHHHHHHHHHHHh Q lcl|Aclame:pro 200 YALGDTF--ASFFTGSLNAVMKHIADVTQQHVVEDLVDQ----NWGP----EEPAPRLVPAQL-GKEQPVTAEAIRALVE 268 (355) Q Consensus 200 ~Al~~vh--~~v~~~~~~ad~~~i~~~ln~~li~~l~~l----Nf~~----~~~~P~~~~~~~-~~d~~~~ae~~~~l~~ 268 (355) ..+.++. ..-....+.+-.+.+...|. +|+..++.+ ++.. ...-+.+.|+.. -.|..+.++.+.+++. T Consensus 374 ~TAtei~s~~~~~~~t~~~~~~~~~~al~-~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~ 452 (500) T protein:vir:30 374 KTATEIVSENSDTYQMRNSIVALVEQSLK-ELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVN 452 (500) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHH Confidence 2223332 22233345566677777774 477766543 2211 111235777753 4567788889999999 Q ss_pred CCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccC Q lcl|Aclame:pro 269 CGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAA 322 (355) Q Consensus 269 ~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (355) +|+... +.++.+.||+++.+..+....-.....+.... .. +....-++ T Consensus 453 aGi~s~----~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~-~~-~~~~~~g~ 500 (500) T protein:vir:30 453 AGFGTR----EMAIQKVLNVTEEKAQEIAAEINTGIVDEINQ-QR-TDTHLYGE 500 (500) T ss_pred cCCCCH----HHHHHhcCCCCHHHHHHHHHHHHHhccccCCC-CC-ccccccCC Confidence 997552 56788889986432211111111111111000 00 00000000 No 186 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=97.02 E-value=0.0002 Score=40.81 Aligned_cols=297 Identities=9% Similarity=0.020 Sum_probs=115.8 Q ss_pred CeEEEEe----------------eeCCEEEEeeeeecC-----ccceee--eeec---CCCceEEEeecCC-----CCCC Q lcl|Aclame:pro 1 MFEQVYR----------------IENGRARLGKLAWRP-----PRTISR--FDVA---PDGGLVAIEQWGV-----FGKA 49 (355) Q Consensus 1 V~Eivw~----------------~~~g~~~~~~l~~r~-----~~~i~~--f~~~---~~g~l~~~~q~~~-----~g~~ 49 (355) |+=+.|. ..++..+-..|.++- +.+|.. |+-+ .-|....+..-.. .... T Consensus 152 ~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~ 231 (500) T protein:vir:98 152 FLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVT 231 (500) T ss_pred eEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEec Confidence 2222221 111111111111110 111111 1100 0011111100000 0001 Q ss_pred ceeeCCccEEEEe----cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHH Q lcl|Aclame:pro 50 TVRIPVDRLVVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQ 125 (355) Q Consensus 50 ~~~ip~~k~i~~~----~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~ 125 (355) +++-|. |.+++ +....++|+|.|.+..+....-.-...+..|+.-++. | ...+.. +...-....+....+- T Consensus 232 ~~~~p~--f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~-g-~~~i~v-~~~~l~~~~~~~~g~~ 306 (500) T protein:vir:98 232 DVTRPI--FTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKM-G-QRRVAV-PESLTALTVRTTDGDV 306 (500) T ss_pred cCCCcc--EEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh-C-cceeee-chHHhcccCCCCCccc Confidence 111222 33332 3345689999999999998877777777777766663 1 222222 1100000000000000 Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEEccC----CceEEEeccCCCcccHHHHHHHHHHHHHHHH-hhh-hhccccCCccch Q lcl|Aclame:pro 126 WLNDQKEEGLQLAKEFRAGEAAGGYIPH----GANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LAH-FLTLGGDKSTGS 199 (355) Q Consensus 126 ~~~~~~~~l~~~~~~~~~G~~~~~v~p~----~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~i-lgq-tlt~~~~~~~GS 199 (355) +..-. +......+..++. +..|+.+...-....|...++.+=++|+..+ +++ ++..+ ++ |. T Consensus 307 --------~~~~~--~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~--~~-g~ 373 (500) T protein:vir:98 307 --------VPRPR--FESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFD--GK-SM 373 (500) T ss_pred --------cCCcc--cCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccC--cC-cc Confidence 00000 0000111222221 1223333333233446666666666665443 232 33222 22 22 Q ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCC----cccccEEEecCC-CccHHHHHHHHHHHHh Q lcl|Aclame:pro 200 YALGDTF--ASFFTGSLNAVMKHIADVTQQHVVEDLVDQ----NWGP----EEPAPRLVPAQL-GKEQPVTAEAIRALVE 268 (355) Q Consensus 200 ~Al~~vh--~~v~~~~~~ad~~~i~~~ln~~li~~l~~l----Nf~~----~~~~P~~~~~~~-~~d~~~~ae~~~~l~~ 268 (355) ..+.++. ..-....+.+-.+.+...|. +|+..++.+ ++.. ...-+.+.|+.. -.|..+.++.+.+++. T Consensus 374 ~TAtei~s~~~~~~~t~~~~~~~~~~al~-~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~ 452 (500) T protein:vir:98 374 KTATEIVSENSDTYQMRNSIVALVEQSLK-ELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVN 452 (500) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHH Confidence 2223332 22233345566677777774 477766543 2211 111235777753 4567788889999999 Q ss_pred CCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccC Q lcl|Aclame:pro 269 CGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAA 322 (355) Q Consensus 269 ~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (355) +|+... +.++.+.||+++.+..+....-.....+.... .. +....-++ T Consensus 453 aGi~s~----~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~-~~-~~~~~~g~ 500 (500) T protein:vir:98 453 AGFGTR----EMAIQKVLNVTEEKAQEIAAEINTGIVDEINQ-QR-TDTHLYGE 500 (500) T ss_pred cCCCCH----HHHHHhcCCCCHHHHHHHHHHHHHhccccCCC-CC-ccccccCC Confidence 997552 56788889986432211111111111111000 00 00000000 No 187 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=97.02 E-value=0.00021 Score=40.77 Aligned_cols=302 Identities=10% Similarity=-0.034 Sum_probs=131.1 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceEE---------------------------EeecCCCCC-Cc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLVA---------------------------IEQWGVFGK-AT 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~~---------------------------~~q~~~~g~-~~ 50 (355) .++++|.-++|...+..+ +|+... ..+++ .++++. +...+.... .. T Consensus 153 a~~~vy~ded~~~~i~~~---~p~~~~-~v~d~~~~~~~~~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~ 228 (501) T protein:vir:27 153 AYEVIYRNEYDETRIKRL---NPLETF-VIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISV 228 (501) T ss_pred EEEEEEeCCCCceEEEEE---ccceeE-EEecCCCCCceEEEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccc Confidence 788888766665443322 222111 11111 111110 000000000 00 Q ss_pred eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 51 VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 51 ~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) .+.+..+ ++.| ..|+.|.|.+..+....=--...+..++..++.|..++.+++|.......... .. T Consensus 229 ~~~~~g~vPvv~~-----~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~-~~------ 296 (501) T protein:vir:27 229 TTHAFGTVPITEF-----LNNVDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQA-SD------ 296 (501) T ss_pred cccCCCcccEEEe-----cCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCcccch-hh------ Confidence 1111111 2222 24678999998876665555667778888888888787777764332211110 00 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS 208 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~ 208 (355) ... . .++ .+..+ .++.....+.+++++........++.+++.+.+.|...-....++.++-++..|...-+.... T Consensus 297 -~~~-~-~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~ 371 (501) T protein:vir:27 297 -MKR-T-RLM-QLKPP-KSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDTNFSGNTSGEALKYKLF 371 (501) T ss_pred -hhh-c-Cce-eeccc-ccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCccccccCchHHHHHHHHH Confidence 000 0 000 00000 111223345678888777777789999999999998887777665443222112111111112 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CC-c--ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHH Q lcl|Aclame:pro 209 FFTGSLNAVMKHIADVTQQHVVEDLVDQ-NW--GP-E--EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKD 281 (355) Q Consensus 209 v~~~~~~ad~~~i~~~ln~~li~~l~~l-Nf--~~-~--~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~ 281 (355) -.......-.+.+...|.+ +++.++.+ |. .. . ..-..+.|....+ +..+.++.+.+|. |+ ++ .+. T Consensus 372 ~l~~ka~~~~~~~~~~l~~-~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl~--g~-iS----~et 443 (501) T protein:vir:27 372 GLDQDRVDTQSQFTQGLKR-RYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLG--GQ-VS----QET 443 (501) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-Cc----HHH Confidence 2223334444556666643 55554442 21 11 1 1123567765555 5677888888874 64 32 356 Q ss_pred HHHHhCC-CCCCCcccccccc-c--cccCCccccccccccccc----cCCcccCcccc Q lcl|Aclame:pro 282 LRARYGL-PAPAERDDGADAA-A--AKAAGRRRAKRLPGQRQG----AALPSRSPRAD 331 (355) Q Consensus 282 ~~e~~gl-p~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 331 (355) +.+.++. ..|..+-+..... . .............+.... ..++......+ T Consensus 444 ~l~~l~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~e~~~~ 501 (501) T protein:vir:27 444 ALSLSGLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFERAYE 501 (501) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCccccccccCC Confidence 6666644 3332221111000 0 000000000110011100 01111111111 No 188 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=97.02 E-value=0.00021 Score=40.76 Aligned_cols=296 Identities=13% Similarity=-0.022 Sum_probs=118.3 Q ss_pred CeEEEEeeeCCEEEEeeeeec------Ccc-------ceeeeeecCCCceE------------EEe----ec-------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR------PPR-------TISRFDVAPDGGLV------------AIE----QW-------- 43 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r------~~~-------~i~~f~~~~~g~l~------------~~~----q~-------- 43 (355) .++++|..++|...+..+.+. ++. -+.++. +.++... +.+ .. T Consensus 116 a~~~~~~~edg~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (456) T protein:vir:79 116 SYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRSAMRWWR-DLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVT 194 (456) T ss_pred eEEEEeeCCCCceEEEEeccceeEEEEcCCCCCceEEEEEEEE-ecCCceeEEEEEcCCceEEEEEEEEeeccccceeee Confidence 778888766664333222111 110 111121 1121110 000 00 Q ss_pred -CCCCCCcee-eC-CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccch Q lcl|Aclame:pro 44 -GVFGKATVR-IP-VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDT 120 (355) Q Consensus 44 -~~~g~~~~~-ip-~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~ 120 (355) ...+...+. .| ....+.+. .+.|+.|.|.+..+-...=--...+...+...+-+..+..++.|-.... ...|. T Consensus 195 ~~~~~~~~~~~~~~~~~~~pvv---~~~N~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~-~~~d~ 270 (456) T protein:vir:79 195 RISDSWVPVGDAVVTGSPPPVV---VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRL-PKVDE 270 (456) T ss_pred ccCCceeecccccCCCCceeEE---EecCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCccc-ccccc Confidence 000000000 00 01111111 2357888988887644321222233344445565555555544432111 01110 Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh Q lcl|Aclame:pro 121 ARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY 200 (355) Q Consensus 121 ~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~ 200 (355) .+.. + .....+..+.+....+|.+.++..+. ..+...|...++..-.+|+...--+....++..+..|. T Consensus 271 -~g~~-----i----~~~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~N~Sg 339 (456) T protein:vir:79 271 -NGNA-----I----DYASIFEAAPGALWELPPGVDIWESQ-TNDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSA 339 (456) T ss_pred -cccc-----c----chhhhhhhhccccccCCCCcceeeec-ccChHHHHHHHHHHHHHHHhhcCCChhHhcccccCcHH Confidence 0000 0 00111122333445677777764332 22334466666666666665422221111111111222 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 201 ALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 201 Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) ..-.....-+...++.-.+.+...|.+ +++.++.+.......-.++.|.... ....+.++++.+|+.+|+.. . T Consensus 340 ~Al~~~~~~l~~k~~~~~~~f~~~l~~-~~~l~~~~~g~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~~~-----~ 413 (456) T protein:vir:79 340 EGAHNIEKGFLFKCEDRLSIAKIGLEA-ILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESW-----A 413 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccceEEeCCCCCcCHHHHHHHHHHHHhcCCCh-----H Confidence 222233333344445555666777754 7777777664332222355565444 35678899999999999733 3 Q ss_pred HHHHHHhCCCCCCCcccccc----ccccccCCccccccccccc Q lcl|Aclame:pro 280 KDLRARYGLPAPAERDDGAD----AAAAKAAGRRRAKRLPGQR 318 (355) Q Consensus 280 ~~~~e~~glp~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 318 (355) +-+++.+|+.+.+-...... +.........+.+..+++. T Consensus 414 ~~~~~~lg~~~~~i~~~e~~r~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:79 414 SIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhHhhcCCCCCCC Confidence 44567888854311100000 0000000000000000000 No 189 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=96.96 E-value=0.00023 Score=40.48 Aligned_cols=299 Identities=10% Similarity=0.008 Sum_probs=118.5 Q ss_pred CeEEEEe----------------eeCCEEEEeeeeecCccceeeeeecCCCceEEEeec-------CCC----------C Q lcl|Aclame:pro 1 MFEQVYR----------------IENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQW-------GVF----------G 47 (355) Q Consensus 1 V~Eivw~----------------~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~-------~~~----------g 47 (355) ++ .+|. ...............+..+ |.+...+.. ..... ... + T Consensus 156 ~~-~iy~D~~~~~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (501) T protein:vir:25 156 IL-AVYADPSVDAWPQYALETWVAQKDAKPHRRGVLYDDTYM--YELDLGEVV-LGDAGGGQATQQPVNVREVTDVIEHG 231 (501) T ss_pred EE-EEEecCCCCcceeEEEEEEeeccccCcceeEEEecCeeE--EEEecCcee-eeeccccccccccccccccccccccc Confidence 21 1221 1100000001111111111 222222111 11000 000 0 Q ss_pred CCceeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHH Q lcl|Aclame:pro 48 KATVRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWL 127 (355) Q Consensus 48 ~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~ 127 (355) ....+++.-=++.|.+... .+++|.|-+..+....=-=...+...+...|-|..+..+++|-.... .+ T Consensus 232 ~~~~~~~~vPiv~f~N~~~-~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~~~~~---~~-------- 299 (501) T protein:vir:25 232 ATFEGKPVCPVVRFVNGRD-ADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISGWTGSK---AE-------- 299 (501) T ss_pred cccCCccceeeEeccCccc-cCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCCCCCc---cc-------- Confidence 0001111111344555444 47788888776543333333345566778888877766666542211 10 Q ss_pred HHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 128 NDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 128 ~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) ..+ + ..+..+++ +|.+.++.+... +...|...++.+-..|+..--.+..+.++..+..|...-... T Consensus 300 ------~~~----~--~~~~i~~~-~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~Sg~Al~~~ 366 (501) T protein:vir:25 300 ------VLK----A--SALRVWTF-EDPEVKAQAFPPASVEPYNLILEEMLQHVAMVAQISPAQVTGKMINVSAEALAAA 366 (501) T ss_pred ------hhh----h--cccceecc-CCCCceEEEecccChHHHHHHHHHHHHHHHhhcCCChhhhccccCChHHHHHHHH Confidence 000 1 11222333 344555554332 334566667777777766544443332211111122222233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHH Q lcl|Aclame:pro 207 ASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEE---PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDL 282 (355) Q Consensus 207 ~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~---~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~ 282 (355) ..-.....+.-.+.+...|. ++++.++.+...... .-..+.|....+ ...+.++++.+|+.+|+ +. +.-+ T Consensus 367 ~~~l~~ka~~k~~~f~~~l~-~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi--s~---et~~ 440 (501) T protein:vir:25 367 EANQQRKLAAKRESFGESWE-QLLRLAAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI--PI---EHLL 440 (501) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC--CH---HHHH Confidence 33444455566666777775 477776666654321 112456665544 66889999999999885 21 3334 Q ss_pred HHHhCCCCCCCcc--ccc-cccc-----cccC-CccccccccccccccCCcccCccccchhHH Q lcl|Aclame:pro 283 RARYGLPAPAERD--DGA-DAAA-----AKAA-GRRRAKRLPGQRQGAALPSRSPRADPPRRR 336 (355) Q Consensus 283 ~e~~glp~~~~~~--~~~-~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (355) .+..|+.+++-+. +.. .+.. .... .+.+..+.++...... .......+.... T Consensus 441 ~~~~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~ 501 (501) T protein:vir:25 441 SMVPGMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQAAAQA--LNEGGVNGNGGA 501 (501) T ss_pred HHcCCCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCCCCCCCCCccc--cccccCCCCCCC Confidence 5567886433111 000 0000 0000 0000000000000000 000000000000 No 190 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=96.95 E-value=0.00024 Score=40.40 Aligned_cols=300 Identities=13% Similarity=0.057 Sum_probs=122.9 Q ss_pred CeEEEEe----eeCCE--EEEeeeeecCccceeeeeecCCCc----eEEEeecCCCCCCceeeCCccEEEEecCCCCCcc Q lcl|Aclame:pro 1 MFEQVYR----IENGR--ARLGKLAWRPPRTISRFDVAPDGG----LVAIEQWGVFGKATVRIPVDRLVVFVNEREGANW 70 (355) Q Consensus 1 V~Eivw~----~~~g~--~~~~~l~~r~~~~i~~f~~~~~g~----l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p 70 (355) +..++|+ ..||+ .....+....+-..+.|+....+. -..+...+. ...-.|| |+.+. ....+-. T Consensus 180 L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~~~e~~~~~~g~--~~l~~IP---~v~~~-~~~~~~~ 253 (513) T protein:vir:97 180 LQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQKEEWALADEWA--TGLNYVP---LVTFY-ADRQGFM 253 (513) T ss_pred eeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCCccccceEEecCCC--CcCCcee---EEEEe-cCCCCCC Confidence 1112221 11221 111111101111111222222211 011111111 1111233 23332 2233444 Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEE Q lcl|Aclame:pro 71 LGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGY 150 (355) Q Consensus 71 ~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v 150 (355) .+.+.|..++..-+---....+.-..+..-+.|+|++.|...... + .+..|..+++. T Consensus 254 ~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l~~~G~~~~~~---~--------------------~i~iG~~~~~~ 310 (513) T protein:vir:97 254 MGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPILACSGASGEDS---D--------------------PVVVGPNKVLY 310 (513) T ss_pred CCccchHHHHHHHHHHHhhhhhHHHHHHhcccceeeeecCCcCCC---C--------------------ceEeecccccc Confidence 455555555444332223344444455444567777765422110 0 12348888899 Q ss_pred ccC-CceEEEeccCCCcc-cHHHHHHHHHHHHHHHHhhhhhccc-cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 151 IPH-GANFTLTGVQGKLP-EMDGPIRYHDEQIARAVLAHFLTLG-GDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQ 227 (355) Q Consensus 151 ~p~-~~~ie~~~~~g~~~-~~~~~i~~~d~~Isk~ilgqtlt~~-~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~ 227 (355) +|. +.++.+++.+|++. ..+..++....+| ..+|-.|... ....++. ...........++...+..+++.++ T Consensus 311 lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm--~~~Ga~ll~~~~~~~Ta~--a~~~~~~~~~S~L~~~a~~le~al~- 385 (513) T protein:vir:97 311 NPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQM--AGYGAEFLKRKTGGQTAT--ARALDSAEATSDLSAMTGLFEDALA- 385 (513) T ss_pred CCCCCCcceeeccCchhHHHHHHHHHHHHHHH--HHHHHHhhccCCccccHH--HHHHHHHHHHHHHHHHHHHHHHHHH- Confidence 996 89999999998764 4677777777777 3334433222 1112222 2334455556677778888999996 Q ss_pred HHHHHHHHhCCCCcccccEEEecC-C-Ccc-HHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCc-c---ccccc Q lcl|Aclame:pro 228 HVVEDLVDQNWGPEEPAPRLVPAQ-L-GKE-QPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAER-D---DGADA 300 (355) Q Consensus 228 ~li~~l~~lNf~~~~~~P~~~~~~-~-~~d-~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~-~---~~~~~ 300 (355) +++.++..+-.... ..++|.+.. . ... .....+++.++.+.|.+.. ...-++++ +.|+=.|..+ + +.... T Consensus 386 ~~l~~~a~wlg~~~-~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~-~t~~~~L~-r~gvl~~d~d~~~~~e~~~~ 462 (513) T protein:vir:97 386 QALDITADWLRLGP-NGGTVELVKDYDLEEMDAPGLQALQVAREKRDISR-KTYLNGLR-LRGVLPEDFDEDEDWEELME 462 (513) T ss_pred HHHHHHHHHhCCCC-CccEEEeccccCcccCCHHHHHHHHHHHhCCCCCH-HHHHHHHH-hccCCCccCCHHHHHHHHHH Confidence 48888888754222 224565542 1 112 2344566677778887542 11122232 2344212211 1 11111 Q ss_pred cccccCC---------c-----cccccccccccccCCcccCccccchhHHH Q lcl|Aclame:pro 301 AAAKAAG---------R-----RRAKRLPGQRQGAALPSRSPRADPPRRRG 337 (355) Q Consensus 301 ~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (355) .....+. + .....+.+...+++..+.......+.... T Consensus 463 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (513) T protein:vir:97 463 EISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGEGGEGGGNPGGES 513 (513) T ss_pred hhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC Confidence 0000000 0 00111111111111111111111111100 No 191 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=96.94 E-value=0.00025 Score=40.34 Aligned_cols=308 Identities=10% Similarity=-0.043 Sum_probs=129.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceE---------------------------EEeecCCCCC-Cc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLV---------------------------AIEQWGVFGK-AT 50 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~---------------------------~~~q~~~~g~-~~ 50 (355) .++++|.-.+|.+.+..+ +|+.. ...+++ .++++ .+...+.... .. T Consensus 154 a~~~v~~dedg~~~i~~~---~p~~~-~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~ 229 (502) T protein:vir:48 154 AYEVIYRSEYDETRIKRL---SPLET-FVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISV 229 (502) T ss_pred EEEEEEeCCCCceEEEEE---cccce-EEEEcCCCCCceEEEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccc Confidence 778888665665443322 22211 011111 11111 1110000000 00 Q ss_pred eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 51 VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 51 ~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) .+.+..+ ++.| .+|+.|.|.+..+....=.-...+..++..++.|..++.++.|......... ... T Consensus 230 ~~~~~g~vPvv~~-----~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~----~~~--- 297 (502) T protein:vir:48 230 TPHAFGTVPITEF-----LNNADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQGMQ----ASD--- 297 (502) T ss_pred eecCCCccceEEe-----cCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcccccccc----hhh--- Confidence 0111111 1222 2477899999886666555566778888889988877777766532221110 000 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFAS 208 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~ 208 (355) .. .. .++ ++... ...-....+.+++++........++..++.+.+.|.+.-....++.++-++..|...-+.... T Consensus 298 -~~-~~-~~~-~~~~~-~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~ 372 (502) T protein:vir:48 298 -MK-RT-RLM-QLKPP-KSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDNHFSGNASGEALKYKLF 372 (502) T ss_pred -hh-hc-cee-ecccc-ccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCccccccCchHHHHHHHHH Confidence 00 00 000 00000 001112345788888777666778889999999998876666554432211111111111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---CCCc--ccccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHH Q lcl|Aclame:pro 209 FFTGSLNAVMKHIADVTQQHVVEDLVDQ-N---WGPE--EPAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKD 281 (355) Q Consensus 209 v~~~~~~ad~~~i~~~ln~~li~~l~~l-N---f~~~--~~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~ 281 (355) -.......-.+.+...|.+ +++.++.+ + .... ..-..+.|....+ +..+.++.+.+|. |+ ++ .+. T Consensus 373 ~l~~k~~~~~~~~~~~l~~-~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~--g~-iS----~et 444 (502) T protein:vir:48 373 GLDQDRVDTQSQFTQGLKR-RYRLAARIGSLVNEFKDFDESRLKITFTPNLPKSLYEQVSILNDLG--GQ-VS----QET 444 (502) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-Cc----HHH Confidence 2222333444555666643 55554443 1 1111 1124667765554 5678888888884 64 33 466 Q ss_pred HHHHhCC-CCCCCcccccc-ccccccCCccccccccccccccCCcccCccccchhHHH Q lcl|Aclame:pro 282 LRARYGL-PAPAERDDGAD-AAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRG 337 (355) Q Consensus 282 ~~e~~gl-p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (355) +.+.++. ..+..+-+... +.........+.........+.+....++..+...+-. T Consensus 445 ~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~~~~~~ 502 (502) T protein:vir:48 445 ALSLSGLVENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDDFERVYE 502 (502) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcCcCCCCC Confidence 7777765 22221111000 00000000000000000000111000000000000000 No 192 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=96.92 E-value=0.00026 Score=40.26 Aligned_cols=305 Identities=12% Similarity=0.015 Sum_probs=117.5 Q ss_pred CeE----------EEEeee---------------CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCC Q lcl|Aclame:pro 1 MFE----------QVYRIE---------------NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPV 55 (355) Q Consensus 1 V~E----------ivw~~~---------------~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~ 55 (355) +.. .+|... ++...-.. .+-+ ..+.+|.. .+|+...... ....++. T Consensus 139 ~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~-~~~~~~~~-~~~~~~~~~~------~~h~~g~ 209 (486) T protein:vir:42 139 VPIIRVEPPTRMHAEIDPRINRVSKAIRVAYDKEGNEIQAAT-LYTP-METIGWFR-ADGEWAEWFN------VPHGLGV 209 (486) T ss_pred eeEEEEecccceEEEEeCCCCCeEEEEEEEEecCCCeEEEEE-EEcC-CcEEEEEe-cCCcEEeecc------eecCCCC Confidence 000 122211 11111111 1112 11222221 2232221111 0111222 Q ss_pred ccEEEEecCCCCCccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 56 DRLVVFVNEREGANWLGQSLLRQAY-KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEG 134 (355) Q Consensus 56 ~k~i~~~~~~~~~~p~G~~ll~~~~-~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l 134 (355) -=++.|+++.+.+.++|.|-+..-. ...=-=...+...+...|-|..+..+++|.........+.. .. .. T Consensus 210 vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~~-~~--------~~ 280 (486) T protein:vir:42 210 VPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDSET-GQ--------TL 280 (486) T ss_pred ceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCcccccccccc-cc--------ch Confidence 2246688888889999998876422 11111122344566677777777666665332111111100 00 00 Q ss_pred HHHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCcc----ch-hhhHHHHHHH Q lcl|Aclame:pro 135 LQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKST----GS-YALGDTFASF 209 (355) Q Consensus 135 ~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~----GS-~Al~~vh~~v 209 (355) +....+...+++ +.+.++.+.. ..+...++++++.-|.+......++...=++. .| -|+. ....- T Consensus 281 ------~~~~~~~~~~~~-~~~~~~~q~~--~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~-~~~~~ 350 (486) T protein:vir:42 281 ------FDAYLARILAFE-DAEGKIQQFS--AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIR-AAESR 350 (486) T ss_pred ------hhhhhchhcccC-CCCceEEeec--ccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHH-HHHHH Confidence 000111222333 3345565443 23456667777776665533333321111111 11 1221 22233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc--cc--cEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHH Q lcl|Aclame:pro 210 FTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEE--PA--PRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRA 284 (355) Q Consensus 210 ~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~--~~--P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e 284 (355) +....+.-.+.+...|.+ +++.++.+-.+... .+ -++.|..... ...+.++.+.+|++.|.-+. +.+.+++ T Consensus 351 l~~ka~~~~~~f~~~l~~-~~~l~~~~~~~~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~---s~et~~~ 426 (486) T protein:vir:42 351 LIKKVERKNLMFGGAWEE-AMRIAYRIMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVI---PRERARI 426 (486) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCC---CHHHHHh Confidence 333344455556666644 55555444222111 11 2456655444 56788999999998764222 2567788 Q ss_pred HhCCCCCCCcccc-----cccccccc--CCccccccccccccccCCcccCccccchhHHH Q lcl|Aclame:pro 285 RYGLPAPAERDDG-----ADAAAAKA--AGRRRAKRLPGQRQGAALPSRSPRADPPRRRG 337 (355) Q Consensus 285 ~~glp~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (355) .+|+-+....+.. ........ .-....+..++....+..+...+.+......+ T Consensus 427 ~lg~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 427 DMGYSVKEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPPKPQPAIESSGGDA 486 (486) T ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcccCCCCCCC Confidence 8888533221100 00000000 00000011111111011111111111111111 No 193 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=96.90 E-value=0.00027 Score=40.15 Aligned_cols=296 Identities=12% Similarity=0.039 Sum_probs=118.2 Q ss_pred CeEEEEee-----e-CCEEEEeeee-e----c--Ccc-ceeeeeecCCCceEEE-eec-CCCCC-CceeeCCccEEEEec Q lcl|Aclame:pro 1 MFEQVYRI-----E-NGRARLGKLA-W----R--PPR-TISRFDVAPDGGLVAI-EQW-GVFGK-ATVRIPVDRLVVFVN 63 (355) Q Consensus 1 V~Eivw~~-----~-~g~~~~~~l~-~----r--~~~-~i~~f~~~~~g~l~~~-~q~-~~~g~-~~~~ip~~k~i~~~~ 63 (355) +..++|+. + ++.+..+... + + +.. ....|+.+.+|.-... +.. ...|. .--.|| |+++. T Consensus 173 Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~~~~~~~~~~g~~~l~~IP---fv~~~- 248 (489) T protein:vir:78 173 VTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQEDVVEIYPDLGESLRGVIP---FTFIG- 248 (489) T ss_pred eeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccceeeEEeccCCCCccCeee---EEEEe- Confidence 23333321 1 1221111110 0 0 000 0112334444432111 110 01111 111233 23222 Q ss_pred CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 64 EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRA 143 (355) Q Consensus 64 ~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~ 143 (355) ....+--.+.+.|..++..-+---....+.-..+..-+.|+|++.|.-.......+.. . -..++- T Consensus 249 ~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~-------------~--~~~i~~ 313 (489) T protein:vir:78 249 ATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAFKEA-------------N--PNGIKF 313 (489) T ss_pred cCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCccCCccccccc-------------C--ccceee Confidence 2223333345444444433211112222333333333557777665322111000000 0 011344 Q ss_pred CCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhh-hhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 GEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLA-HFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIA 222 (355) Q Consensus 144 G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilg-qtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~ 222 (355) |+.++..+|.+.+..+++++++... ++.++-...+|. .+| ..++. +...+++-+ .....-...++.+.+..++ T Consensus 314 g~~~~~~lp~~~~~~~ie~~~~~~~-r~~l~~le~qm~--~lGa~l~~~-~~~~Ta~~~--~~~~~~~~S~L~~~a~~~e 387 (489) T protein:vir:78 314 GSRRGHNLGYGGSAQLIQAGENNLA-RQNMLDKEQQAI--QIGAQLITP-TQQITAQSA--RIQRGADTSVMATIARNVS 387 (489) T ss_pred CCcccccCCCCCCcceeccCcchHH-HHHHHHHHHHHH--HHhhhhccC-CcchhHHHH--HHHHHHhhHHHHHHHHHHH Confidence 7888899999999999998876543 333333333333 334 33332 222333322 2334444667788889999 Q ss_pred HHHHHHHHHHHHHhCCCCcccccEEEecC--CC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCcccccc Q lcl|Aclame:pro 223 DVTQQHVVEDLVDQNWGPEEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGAD 299 (355) Q Consensus 223 ~~ln~~li~~l~~lNf~~~~~~P~~~~~~--~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~ 299 (355) +.+++ ++.+++.+-.-....-+.|.+.. .. .-+....+.+.++.+.|.+.. .....++ ++-|+..+..++ ... T Consensus 388 ~al~~-~l~~~a~w~G~~~~~~~~i~~n~dF~~~~~d~~~~~al~~~~~~G~is~-~t~~~~L-~~~gv~d~~~e~-~~~ 463 (489) T protein:vir:78 388 QAYTD-ALRWVAVMLGKPEDTEVEFRLNMDFFLEPMTAQDRAAWMADINAGLLPA-TAYYAAL-RKAGVTDWTDAD-IKD 463 (489) T ss_pred HHHHH-HHHHHHHHcCCCCCCceEEEeecccCcccCCHHHHHHHHHHHhcCCCCH-HHHHHHH-HhCCCCCccHHH-HHH Confidence 99974 88999987432222223444321 11 112333555666778886442 2223333 445675443221 111 Q ss_pred ccccccCCccccccccccccccCCcccCccccc Q lcl|Aclame:pro 300 AAAAKAAGRRRAKRLPGQRQGAALPSRSPRADP 332 (355) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (355) ..... +.+ .+....++.+....+.+. T Consensus 464 ei~~~-~~~------~~~~~~g~~~~~~q~~~~ 489 (489) T protein:vir:78 464 AVADQ-PLP------VATEVQGEIPQSAQQQEK 489 (489) T ss_pred HHhhc-CCC------cccCCcccCCCCcccccC Confidence 11110 000 111111222222222222 No 194 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=96.72 E-value=0.00038 Score=39.30 Aligned_cols=283 Identities=7% Similarity=-0.031 Sum_probs=128.2 Q ss_pred CeEEEEee-eCCEEEEeeeeecCccceeeeeecC--CCceEE-EeecC----CCCCCc---------------------- Q lcl|Aclame:pro 1 MFEQVYRI-ENGRARLGKLAWRPPRTISRFDVAP--DGGLVA-IEQWG----VFGKAT---------------------- 50 (355) Q Consensus 1 V~Eivw~~-~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~~-~~q~~----~~g~~~---------------------- 50 (355) .++++|-. ++|.+...-+ +|+.+. ..+++ +++++. ++.+. ..+... T Consensus 126 ~~~~v~~d~~~g~~~~~~~---~p~~~~-~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~ 201 (471) T protein:vir:10 126 AWLHVWKDASDNSFRYACV---DSKEVI-PIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPL 201 (471) T ss_pred EEEEEEeeCCCCeeEEEEE---cccceE-EEEcCCCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCccc Confidence 78888854 4566544432 222221 11121 112111 11000 000000 Q ss_pred ------------------------eeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 51 ------------------------VRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGV 104 (355) Q Consensus 51 ------------------------~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~ 104 (355) .+.+..+ ++.|+ +|..|.|.+..+-...=--...+.+++..++.|..|+ T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~ 276 (471) T protein:vir:10 202 EELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFK-----NNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVI 276 (471) T ss_pred ccccccccccccccccccccccccccCCCCceeEEEec-----cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCce Confidence 0000001 12221 3455788887765554445556788888899998887 Q ss_pred eEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc-----CCceEEEeccCCCcccHHHHHHHHHHH Q lcl|Aclame:pro 105 PIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP-----HGANFTLTGVQGKLPEMDGPIRYHDEQ 179 (355) Q Consensus 105 p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p-----~~~~ie~~~~~g~~~~~~~~i~~~d~~ 179 (355) .+++|-.+... .....++.. ...+.++ .+.+++++....+...++..++++.+. T Consensus 277 lv~~g~~~~~~-------------------~~~~~~~~~--~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 335 (471) T protein:vir:10 277 FVLTNYGGQDK-------------------QEFLEDLKR--YKMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQ 335 (471) T ss_pred eeeecCCcccc-------------------chhHHHhhc--CCeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHH Confidence 77776422110 011112221 1223333 345788998887778899999999999 Q ss_pred HHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHH Q lcl|Aclame:pro 180 IARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPV 258 (355) Q Consensus 180 Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~ 258 (355) |...--+..++.++.++ .|..+-+....-....+..-.+.+...|. ++++.++.+.-..+..-..+.|....+ +..+ T Consensus 336 I~~~s~tp~~~~~~~gn-~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~d~~~i~i~f~~~~p~n~~e 413 (471) T protein:vir:10 336 IFISGQGVNPETDKLGN-SSGVALKFLYSLLELKAGNMETQFRSGYA-TLVKMILKHLGLSDKLKIKQTWTRNSINNDTE 413 (471) T ss_pred HHHHhCCcCCCcccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCceeEEEeCCCCCCCHHH Confidence 99876666554432211 11111111112222233444455555563 466666654322222223566765555 5677 Q ss_pred HHHHHHHHHhCCCcccchhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCc Q lcl|Aclame:pro 259 TAEAIRALVECGAFTADPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 259 ~ae~~~~l~~~G~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355) .++.+.+| .|+ ++ .+.+.+.++. ..+..+-+.......... .....-.+.... ...+ T Consensus 414 ~~~~~~kl--~g~-iS----~et~~~~~p~v~D~~~E~eri~~E~~~~~--~~~~~~~~~~~~----~e~~ 471 (471) T protein:vir:10 414 MAQVVSTL--ATI-TS----RENVAKSNPIVEDWQDELRLQKAEQEGRS--EKLYDMEEVEHE----SEVE 471 (471) T ss_pred HHHHHHHH--hcc-Cc----hHHHHHhCCCCCCHHHHHHHHHHHHHHHH--hcccccCCCCCc----cccC Confidence 88888887 354 33 4567777754 222111010100000000 000000111110 0001 No 195 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=96.62 E-value=0.00046 Score=38.87 Aligned_cols=292 Identities=12% Similarity=0.107 Sum_probs=118.8 Q ss_pred CeEEEEeeeCCE---------EEEeeee--ecCccceeeeeecC----CCceEEEe--ecCCC-CCCceeeCCccEEEEe Q lcl|Aclame:pro 1 MFEQVYRIENGR---------ARLGKLA--WRPPRTISRFDVAP----DGGLVAIE--QWGVF-GKATVRIPVDRLVVFV 62 (355) Q Consensus 1 V~Eivw~~~~g~---------~~~~~l~--~r~~~~i~~f~~~~----~g~l~~~~--q~~~~-g~~~~~ip~~k~i~~~ 62 (355) -+=|+-...+|+ -.+.+|. |+.+-+...+..|. .|+-..++ ...+. +..+..+-+.+++.+. T Consensus 125 ga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~ 204 (449) T protein:vir:10 125 YAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILG 204 (449) T ss_pred cEEEEEEecCCCCCCcccccCcceeeEEeeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeec Confidence 000111111110 0122222 22222221122111 13222221 00011 1122334455555543 Q ss_pred cCCCCCccccchhHHHHHHHHHHHHH----HHHHHHHHHHHhcCCceE-EeecCC--CCccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 63 NEREGANWLGQSLLRQAYKNWLLKDR----FLRIQALVGERNGLGVPI-YQGAPL--PEAIARDTARAEQWLNDQKEEGL 135 (355) Q Consensus 63 ~~~~~~~p~G~~ll~~~~~~~~~K~~----~~~~w~~~~Er~~~g~p~-~~~~~~--~~~~~~d~~~~e~~~~~~~~~l~ 135 (355) ..+ ..|.++|+++|-..+--.. .-..|+.-+.|.. .+.. .+.... ......+ .++. .+.+. T Consensus 205 ~~~----~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~-~~~~~~~~~~~~l~~~~~~~---~e~~----~~~~~ 272 (449) T protein:vir:10 205 DYS----EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQL-NVNFEKEIDFTNLASLYGVS---IDEL----QDKFN 272 (449) T ss_pred CCC----CCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH-hhhhhhhhhhhhhhHHhhCC---chHH----HHHHH Confidence 221 2278899999864311100 0111111111110 0000 000000 0000001 1111 12233 Q ss_pred HHHHHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 136 QLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLN 215 (355) Q Consensus 136 ~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ 215 (355) ..+..+..|.+.. ++..+.+++.++.+ ..+...+++..-.++|-++--+..-+=+.+-+| .|.++ -...+.+.+. T Consensus 273 ~~~~~~~~~~~~~-~i~~~~d~~~~~~~--~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp~g-lnst~-D~~nyyd~i~ 347 (449) T protein:vir:10 273 EVAGEINRGNDVL-MTTQGATVTPLVTS--VADPTATYNVNLQTAAAGVDIPTRILIGNQQAE-RSSTE-DQKYFNARCQ 347 (449) T ss_pred HHHHHHhccchhe-eecCCcceEEEecc--cCChhHHHHHHHHHHHHHhCCCeeeeeccCccc-cccch-hHHHHHHHHH Confidence 3344444565544 45666677777553 234455565555566666543321111122223 33233 2566788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCC-ccHH-------HHHHHHHHHHhCCCcccchhhHHHHHHHhC Q lcl|Aclame:pro 216 AVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLG-KEQP-------VTAEAIRALVECGAFTADPELEKDLRARYG 287 (355) Q Consensus 216 ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~-~d~~-------~~ae~~~~l~~~G~~~~~~~~~~~~~e~~g 287 (355) +-...+...|.+ |++.|+...|+....--.|.|.+.- +..+ ..|++.+++++.|... .++.+++|+.+| T Consensus 348 ~~Q~~l~p~le~-l~~~l~~s~~g~~~~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~--~~~~~EiR~~~~ 424 (449) T protein:vir:10 348 SRRVDLSFEIED-FCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNP--AFSREEIRTAAG 424 (449) T ss_pred HHHHhhhHHHHH-HHHHHHHhhcCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccC--CcCHHHHHHHhc Confidence 877777778855 8888888888654322355565432 2333 3467777888888543 235689999999 Q ss_pred CCCCCCccccccccccccCCccccccccccccccCCcccCccc Q lcl|Aclame:pro 288 LPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRA 330 (355) Q Consensus 288 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (355) ...+..............+....+ | T Consensus 425 ~~~~~~~~~~~e~~de~~~~~d~~------------------a 449 (449) T protein:vir:10 425 YDNDDEEPLGEEDGDEEDKATDSA------------------A 449 (449) T ss_pred ccCCCCCCCCCCCCccccccCCcC------------------C Confidence 865433211111101000000000 0 No 196 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=96.61 E-value=0.00047 Score=38.81 Aligned_cols=313 Identities=12% Similarity=0.023 Sum_probs=120.7 Q ss_pred CeEEEEeeeCCEEEEee-----eee--cCcc-----c-eeeeeec-CC-Cc---e------------EEEeecCCCCC-- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGK-----LAW--RPPR-----T-ISRFDVA-PD-GG---L------------VAIEQWGVFGK-- 48 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~-----l~~--r~~~-----~-i~~f~~~-~~-g~---l------------~~~~q~~~~g~-- 48 (355) +++++|--++|...+.- +.+ -++. . +.+|... .+ .. + ....+....+. T Consensus 133 a~~~v~~ded~~~~i~~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~ 212 (506) T protein:vir:94 133 AYEYVYRGEDNEEHLAKLDPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQ 212 (506) T ss_pred EEEEEEecCCCeeEEEEEcccceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCcccee Confidence 66666654454333221 111 1110 0 1111110 11 10 1 01111000000 Q ss_pred CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhh---- Q lcl|Aclame:pro 49 ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTAR---- 122 (355) Q Consensus 49 ~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~---- 122 (355) ...+.+..+ ++.|+. |..|.|.+..+-...=-=...+..++..++.|..++.+++|.........+... T Consensus 213 ~~~~~~~g~vPvv~~~n-----~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 287 (506) T protein:vir:94 213 VDTTKPITTFPVVEFKN-----SNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDP 287 (506) T ss_pred ccccccCCccceEEecC-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccc Confidence 001111111 233332 445677766655444333445666777777665555554443211110000000 Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCceeEEcc---------CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhcc Q lcl|Aclame:pro 123 --AEQWLNDQKEEGLQLAKEFRAGEAAGGYIP---------HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTL 191 (355) Q Consensus 123 --~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p---------~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~ 191 (355) ... ..........++..+.. ...+.++ .+.+++++........++..++.+.+.|...-.+..++. T Consensus 288 ~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~ 364 (506) T protein:vir:94 288 NDEDA-MAKLAKDKLELIKEMKD--ANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTD 364 (506) T ss_pred ccccc-ccccccchhHHHhhhhh--cCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCcccccc Confidence 000 00000011112222211 1122222 345677787777778889999999999998877776654 Q ss_pred ccCCccchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh----CCCCc--ccccEEEecCCCc-cHHHHH Q lcl|Aclame:pro 192 GGDKSTGSYALGDTFASFFT----GSLNAVMKHIADVTQQHVVEDLVDQ----NWGPE--EPAPRLVPAQLGK-EQPVTA 260 (355) Q Consensus 192 ~~~~~~GS~Al~~vh~~v~~----~~~~ad~~~i~~~ln~~li~~l~~l----Nf~~~--~~~P~~~~~~~~~-d~~~~a 260 (355) ++-++..| .+...... ..+..-.+.+...|. ++++.++.+ |.... ....++.|....+ +..+.+ T Consensus 365 ~~~~~n~S----g~Aik~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a 439 (506) T protein:vir:94 365 ENFASNSS----GVAMQYKVLGTVELASTKRRMFERGLY-ARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQI 439 (506) T ss_pred ccccccch----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHH Confidence 33222111 12222222 222333344455553 355554443 22111 1124677776554 567888 Q ss_pred HHHHHHHhCCCcccchhhHHHHHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCccccchhHH Q lcl|Aclame:pro 261 EAIRALVECGAFTADPELEKDLRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRR 336 (355) Q Consensus 261 e~~~~l~~~G~~~~~~~~~~~~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (355) +.+.+|. |+ ++ .+.+.+.++. +.+..+-+...................+.. .. ........+.+++ T Consensus 440 ~~~~kl~--g~-iS----~et~~~~lp~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~e~~ 506 (506) T protein:vir:94 440 KALVQAG--AT-LP----QKYLYQQLPGVTNPQDIVDMMKEQSANGDYSFDQNGVISND--GQ-TNTTATQTDEEVR 506 (506) T ss_pred HHHHHHh--cc-CC----hHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcchhhcCCCcc--cC-ccccccccccCCC Confidence 8888884 64 33 4667777744 333221111110000000000000000000 00 0111112222222 No 197 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=96.60 E-value=0.00048 Score=38.79 Aligned_cols=331 Identities=9% Similarity=-0.073 Sum_probs=123.8 Q ss_pred CeEEEEeeeCCEEE-------Eeee-------eecCccceeeeeecCCCceE-----------EEeecCCCC------CC Q lcl|Aclame:pro 1 MFEQVYRIENGRAR-------LGKL-------AWRPPRTISRFDVAPDGGLV-----------AIEQWGVFG------KA 49 (355) Q Consensus 1 V~Eivw~~~~g~~~-------~~~l-------~~r~~~~i~~f~~~~~g~l~-----------~~~q~~~~g------~~ 49 (355) -|++||.-.+|.-. |... ..+++.-+.++..+.+|... .+...+... .+ T Consensus 128 af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 207 (504) T protein:vir:99 128 AFLINTEGGAGEPDSLIHVKSAMQATGEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTH 207 (504) T ss_pred eeEEEecCCCCCceeEEEEeccceeEEEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccC Confidence 55556644333211 1110 00011111112222332211 111111000 00 Q ss_pred ceeeCCccEEEEecCCCCCccccchhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 50 TVRIPVDRLVVFVNEREGANWLGQSLLR-QAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 50 ~~~ip~~k~i~~~~~~~~~~p~G~~ll~-~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) ..-+| ++.|.++.+.+.|+|.|-+. .+....=-=+..+...+.-.|-|+.|..+++|-........|..... ... T Consensus 208 ~~gvP---vV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~-~~~ 283 (504) T protein:vir:99 208 KLGVP---VEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKP-AWQ 283 (504) T ss_pred CCCcc---eEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccccccccccc-hhh Confidence 11134 57788888888999987543 33222211222333445667777777766666433222122211110 000 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccCCceEEEeccC-CCcccHHHHHHHHHHHHHHHHhhh--hhccccCCccchhhhHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQ-GKLPEMDGPIRYHDEQIARAVLAH--FLTLGGDKSTGSYALGDT 205 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~-g~~~~~~~~i~~~d~~Isk~ilgq--tlt~~~~~~~GS~Al~~v 205 (355) .. +.++. .+ ..+.=+.++.+.+.++-+.. .+...|...++.+-.+|+..-.-+ .|-..+..+.+|-..-.. T Consensus 284 ~~---~~~i~-~~--~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~ 357 (504) T protein:vir:99 284 IA---LARVF-AL--PDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIA 357 (504) T ss_pred hh---hhhhh-cC--CCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHH Confidence 00 00110 01 11111222333344444332 223345555555555554322221 110011111123222223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcc---cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 206 FASFFTGSLNAVMKHIADVTQQHVVEDLVDQ--NWGPEE---PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 206 h~~v~~~~~~ad~~~i~~~ln~~li~~l~~l--Nf~~~~---~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) ...-+...++.-.+.+...|.+ +++..+.+ |++... .-.++.|..... ...+.++++.||+.+|..... .. T Consensus 358 ~~~~L~~ka~~k~~~f~~~l~~-~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~--~~ 434 (504) T protein:vir:99 358 SREDLIAEAEGATDDWSPAFRR-SMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLK--ET 434 (504) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhcccccc--ch Confidence 3444444556666777777754 66654443 443211 113456655444 557889999999998853211 23 Q ss_pred HHHHHHhCCCCCCCcc---ccccccccc--cCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCC Q lcl|Aclame:pro 280 KDLRARYGLPAPAERD---DGADAAAAK--AAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPD 354 (355) Q Consensus 280 ~~~~e~~glp~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (355) +.+.+.+|+.+.+-.. +........ ..-..+.....+.....+.+...++ ......+..+-..+ T Consensus 435 ~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~a-----------~~~~~~~~~~p~~~ 503 (504) T protein:vir:99 435 EVGLELLGLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQGAGEPP-----------ANEPPAALGRPTLV 503 (504) T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcCCCCCC-----------CCCCCccCCCcccC Confidence 5688899996432110 000000000 0000000000000000000000000 01111222233333 Q ss_pred C Q lcl|Aclame:pro 355 G 355 (355) Q Consensus 355 ~ 355 (355) | T Consensus 504 ~ 504 (504) T protein:vir:99 504 G 504 (504) T ss_pred C Confidence 4 No 198 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=96.56 E-value=0.00051 Score=38.62 Aligned_cols=295 Identities=11% Similarity=0.021 Sum_probs=116.9 Q ss_pred CeEEEEee----e--CCEEEEeeeeecC-----ccceeeeeecCC-----CceEEEeecCC-CC------CCceeeCCcc Q lcl|Aclame:pro 1 MFEQVYRI----E--NGRARLGKLAWRP-----PRTISRFDVAPD-----GGLVAIEQWGV-FG------KATVRIPVDR 57 (355) Q Consensus 1 V~Eivw~~----~--~g~~~~~~l~~r~-----~~~i~~f~~~~~-----g~l~~~~q~~~-~g------~~~~~ip~~k 57 (355) +.|+++-. . ++......+.++- +.+|....|..+ |....+..-+. .+ ..+++-|. T Consensus 164 ~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p~-- 241 (508) T protein:vir:15 164 ISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPL-- 241 (508) T ss_pred eEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCCcce-- Confidence 33332211 0 0000011111100 111221111110 11111110000 00 01111122 Q ss_pred EEEEe----cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 58 LVVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEE 133 (355) Q Consensus 58 ~i~~~----~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~ 133 (355) |++++ ++....+|+|.|.+..+....-.-...+..|+.-++ . |-+-+..+...-. .|..... T Consensus 242 f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~--~~~~i~v~~~~l~--~d~~~~~--------- 307 (508) T protein:vir:15 242 FAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-L--GQKHIAVQPGMLR--FDDEHKP--------- 307 (508) T ss_pred eEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHH-h--cccceeechHHhc--CCCCCcc--------- Confidence 33332 333457899999999998777666666666666664 3 2222222211000 0000000 Q ss_pred HHHHHHHHhcCCceeEEccC----CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH--H Q lcl|Aclame:pro 134 GLQLAKEFRAGEAAGGYIPH----GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF--A 207 (355) Q Consensus 134 l~~~~~~~~~G~~~~~v~p~----~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh--~ 207 (355) .+..+...+..++. +..|+.+...-....|...++.+-+.|...+.-..-|.+-. +.|...+-++. . T Consensus 308 ------~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~-~~~~~TAtei~s~~ 380 (508) T protein:vir:15 308 ------TFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYS-NDGVKTATEVVSNN 380 (508) T ss_pred ------ccCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccc-cCccccHHHHHHHH Confidence 00111122222221 12244443333334466667776677766662222222222 22322223332 2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C----CCC---------cccccEEEecCC-CccHHHHHHHHHHHHhCC Q lcl|Aclame:pro 208 SFFTGSLNAVMKHIADVTQQHVVEDLVDQ---N----WGP---------EEPAPRLVPAQL-GKEQPVTAEAIRALVECG 270 (355) Q Consensus 208 ~v~~~~~~ad~~~i~~~ln~~li~~l~~l---N----f~~---------~~~~P~~~~~~~-~~d~~~~ae~~~~l~~~G 270 (355) .-....+..-.+.+...|. +|+..++.+ + .+. ...-+.+.|+.. -+|..+.++.+.+++.+| T Consensus 381 ~~~~~t~~~~~~~~~~al~-~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aG 459 (508) T protein:vir:15 381 SMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIG 459 (508) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcC Confidence 2233444566777777775 466654432 2 110 111235777754 346677788889999999 Q ss_pred CcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCc Q lcl|Aclame:pro 271 AFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALP 324 (355) Q Consensus 271 ~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (355) +... +.++.+.+|+.+.+..++... ..+..+.........+...+.++- T Consensus 460 i~s~----e~~i~~~~g~~deea~~el~r-i~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 460 ALSK----QTFLQRNYGMTDEQAAEELAK-IQSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred CCCH----HHHHHhcCCCChHHHHHHHHH-HHHhccccCccccccccCCCCCCC Confidence 7542 678888889865322221111 111111111100000111111111 No 199 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=96.52 E-value=0.00055 Score=38.45 Aligned_cols=277 Identities=10% Similarity=-0.035 Sum_probs=116.7 Q ss_pred CeEEEEee-eCCEEEEeeeeecCc---------------cceeeeeecCCCceE-----------EEeecCCCCCCceee Q lcl|Aclame:pro 1 MFEQVYRI-ENGRARLGKLAWRPP---------------RTISRFDVAPDGGLV-----------AIEQWGVFGKATVRI 53 (355) Q Consensus 1 V~Eivw~~-~~g~~~~~~l~~r~~---------------~~i~~f~~~~~g~l~-----------~~~q~~~~g~~~~~i 53 (355) -|.+||.- .+|... +..++| ..+.++..+.+|... .+++.+.......++ T Consensus 104 sf~~v~~~~~~~~p~---i~~~sp~~~~~i~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (422) T protein:vir:97 104 CFVYIMPGAEDGLPK---MQVIEASKATGILDPTTFLLTEGYAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPT 180 (422) T ss_pred eeEEEeeCCCCCeeE---EEEechhhEEEEEeCCCCcceeeEEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCC Confidence 55556632 233311 111111 112223333333321 111111111111112 Q ss_pred CCccEEEEecCCCCCccccchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHH Q lcl|Aclame:pro 54 PVDRLVVFVNEREGANWLGQSLL-RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKE 132 (355) Q Consensus 54 p~~k~i~~~~~~~~~~p~G~~ll-~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~ 132 (355) +.--++.|.++.+-+.|+|.|-+ +.+-...=-=+..+.......|-|+.|..+++|-.. ..... +. T Consensus 181 g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~-d~~~~-----~~------- 247 (422) T protein:vir:97 181 GHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYVLGMDP-DAKPM-----EK------- 247 (422) T ss_pred CCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccCc-ccccC-----ch------- Confidence 22225677888888999998865 333332222223344445666767777666665421 11000 00 Q ss_pred HHHHHHHHHhcCCceeEEccCCc---eEEEeccC-CCcccHHHHHHHHHHHHHHHHhhhhhccccCC-ccchhhhHHHHH Q lcl|Aclame:pro 133 EGLQLAKEFRAGEAAGGYIPHGA---NFTLTGVQ-GKLPEMDGPIRYHDEQIARAVLAHFLTLGGDK-STGSYALGDTFA 207 (355) Q Consensus 133 ~l~~~~~~~~~G~~~~~v~p~~~---~ie~~~~~-g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~-~~GS~Al~~vh~ 207 (355) ... .-+....+|.+. .+++-+.. .+...|...++.+-++|+-.---+.-..+..+ +..|-..-.... T Consensus 248 -~~~-------~~~~i~~~~~de~~~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~ 319 (422) T protein:vir:97 248 -WRA-------TVSTLLEISKDEDGDKPTVGQFTTASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAH 319 (422) T ss_pred -hhh-------hhhhhhccCCCCCCCcceeeecCCCChhHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHH Confidence 000 111234455443 34443322 22234444444444444322111100011110 001221222334 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc---c--cEEEecCCC-cc---HHHHHHHHHHHHhCCCcccchhh Q lcl|Aclame:pro 208 SFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEP---A--PRLVPAQLG-KE---QPVTAEAIRALVECGAFTADPEL 278 (355) Q Consensus 208 ~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~---~--P~~~~~~~~-~d---~~~~ae~~~~l~~~G~~~~~~~~ 278 (355) .-+....+.-.+.+...+.+ +++.++.+..+.... + ..+.|.... .+ ....|+.+.||+.+|-... + T Consensus 320 ~~L~~ka~~k~~~fg~~l~~-~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~---~ 395 (422) T protein:vir:97 320 ENLRAAGRKAQRSFSSGFLN-VAYIAVCLRDEFPYLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFM---D 395 (422) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccc---c Confidence 44444555666777778854 777666554322111 1 245554322 23 3456888999998864322 3 Q ss_pred HHHHHHHhCCCCCCCcccccccccccc Q lcl|Aclame:pro 279 EKDLRARYGLPAPAERDDGADAAAAKA 305 (355) Q Consensus 279 ~~~~~e~~glp~~~~~~~~~~~~~~~~ 305 (355) .+.+++.+|+..+...-.......+.. T Consensus 396 ~~~~~~~lg~~~~~~~~~~~~~~~~d~ 422 (422) T protein:vir:97 396 ADVIRDLTGVKGADKPIPAITEVTTDG 422 (422) T ss_pred HHHHHHHcCCCchhHHHHHHHhhhccC Confidence 568899999965433222221111111 No 200 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=96.44 E-value=0.00063 Score=38.15 Aligned_cols=280 Identities=12% Similarity=-0.049 Sum_probs=126.3 Q ss_pred CeEEEEeeeC--------CEEEEeeeeecCccce-eeeeecCCCceEE-------------------------------- Q lcl|Aclame:pro 1 MFEQVYRIEN--------GRARLGKLAWRPPRTI-SRFDVAPDGGLVA-------------------------------- 39 (355) Q Consensus 1 V~Eivw~~~~--------g~~~~~~l~~r~~~~i-~~f~~~~~g~l~~-------------------------------- 39 (355) .++++|-.++ |.+.. ...+|+.+ ..|.....+.+.. T Consensus 115 a~~~~y~de~~~~~~~~~~~~~~---~~i~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~ 191 (451) T protein:vir:10 115 AWLHYWIDEEYSGEQVTNQTFKY---GVVNTEEIIPIYRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILD 191 (451) T ss_pred EEEEEeecCCcccccccccceeE---EEEcccceEEEEcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEE Confidence 7777775432 22222 22222221 1111111112110 Q ss_pred -EeecCCCCC------CceeeCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec Q lcl|Aclame:pro 40 -IEQWGVFGK------ATVRIPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGA 110 (355) Q Consensus 40 -~~q~~~~g~------~~~~ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~ 110 (355) ++....... ...+.+..+ ++.|. .|..|.|.+..+-...=--...+...+..++.|.-++.+++|- T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----nn~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~ 266 (451) T protein:vir:10 192 KYKFFGVSCCGSQIEHITVQHRFNSVPFVEFS-----NNIKKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENF 266 (451) T ss_pred EEEecccCccccccccccccCCCCeeeEEEec-----cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecC Confidence 010000000 000111111 12221 3566888888766665555567788888888887777776653 Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc-----CCceEEEeccCCCcccHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 111 PLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP-----HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVL 185 (355) Q Consensus 111 ~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p-----~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~il 185 (355) .+... + +...++.. ...+.++ .+.+++++........++..++++.+.|...-- T Consensus 267 ~~~~~-----~--------------~~~~~~~~--~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~ 325 (451) T protein:vir:10 267 GGEDT-----S--------------EFLKELKR--YKTIKTETDSEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQ 325 (451) T ss_pred Ccccc-----h--------------hhHHHHhh--CCeEEecCcCCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 22110 0 11112211 2234444 346788988777778899999999999999877 Q ss_pred hhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cHHHHHHHHH Q lcl|Aclame:pro 186 AHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQPVTAEAIR 264 (355) Q Consensus 186 gqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~~~~ae~~~ 264 (355) ++.++.++-+ ..|..+=.....-.......-.+.+...|. ++++.++.+....+..-..+.|....+ +..+.++.+. T Consensus 326 ~p~~~~~~~g-n~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~-~~~~li~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~ 403 (451) T protein:vir:10 326 GLQQDTENFG-NASGVALKFFYRKLELKSGLLETEFRTSFD-KLIKAILYFLGVTDYKKIQQTYTRNMMSNDLEDADIAT 403 (451) T ss_pred cccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCccceeEEecCCCCCCHHHHHHHHH Confidence 7766543321 111111111111222233333444555553 466666654322221223566665555 5678888888 Q ss_pred HHHhCCCcccchhhHHHHHHHhCCCC-CCCccccccccccccCCccccccccccccccC Q lcl|Aclame:pro 265 ALVECGAFTADPELEKDLRARYGLPA-PAERDDGADAAAAKAAGRRRAKRLPGQRQGAA 322 (355) Q Consensus 265 ~l~~~G~~~~~~~~~~~~~e~~glp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (355) +|+ |. ++ .+.+.+.++.-. +.+.................... +... + T Consensus 404 kl~--g~-iS----~et~~~~~p~v~d~~~e~~~~~ee~~~~~~~~~~~~-~~~~---~ 451 (451) T protein:vir:10 404 KSV--GI-IP----TKIILRHHPWVDDVEEAEKLYLEEKKIQASKVSDDY-NNFT---E 451 (451) T ss_pred HHh--cc-Cc----hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhc-CCCC---C Confidence 885 54 33 466777776532 22211111000000000000000 0000 0 No 201 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=96.25 E-value=0.00083 Score=37.49 Aligned_cols=289 Identities=11% Similarity=0.015 Sum_probs=126.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee---------------eeeecCCC----------ceEEEeecCCCC--CCceee Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS---------------RFDVAPDG----------GLVAIEQWGVFG--KATVRI 53 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~---------------~f~~~~~g----------~l~~~~q~~~~g--~~~~~i 53 (355) +++++|--.+|...+.-+ +|+.+. ++..+.++ ++..++...... ....+. T Consensus 124 ~~~~v~~d~~g~~~i~~~---~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~ 200 (452) T protein:vir:36 124 AFEFLYQDEDTQTNVVYN---SPENMFMVYDDTVKQEPLFAVRYGVDEDKKLQGEVYTLLETIKISGENDEISFGEGTYN 200 (452) T ss_pred EEEEEEecCCCeeEEEEE---cccceEEEEcCCCCCceEEEEEEEEecCceEEEEEEecCeEEEEEEcCCceEEecceec Confidence 777777555554433221 111110 00011111 111111111000 001111 Q ss_pred CCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHH Q lcl|Aclame:pro 54 PVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQK 131 (355) Q Consensus 54 p~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~ 131 (355) +..+ ++.| .+|+.|.|.+..+....=--...+..++..++.|..|+.+++|-.... .+ T Consensus 201 ~~g~iPvv~~-----~n~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~~~~~---~~------------ 260 (452) T protein:vir:36 201 PYPDLPVVEF-----YFNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEE---ED------------ 260 (452) T ss_pred cCCcccEEEe-----cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcCc---hh------------ Confidence 2222 2222 235678888887655554555567888889999988777776532211 10 Q ss_pred HHHHHHHHHHhcCCceeEEccCC-----ceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 132 EEGLQLAKEFRAGEAAGGYIPHG-----ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 132 ~~l~~~~~~~~~G~~~~~v~p~~-----~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) ... ++. ...+.++.+ .+++++........++..++.+.+.|...-.+..++.++.++.+.-|+ ... T Consensus 261 --~~~----~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al-~~~ 331 (452) T protein:vir:36 261 --LKN----IRS--NRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESFGSSSGVSL-AYK 331 (452) T ss_pred --hhh----hhh--cceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccccCCcHHHH-HHH Confidence 111 111 122334332 367888766667778999999999998887666654433222111221 112 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCccc--ccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHH Q lcl|Aclame:pro 207 ASFFTGSLNAVMKHIADVTQQHVVEDLVDQN--WGPEEP--APRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKD 281 (355) Q Consensus 207 ~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN--f~~~~~--~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~ 281 (355) ..-....+..-.+.+...|. ++++.++.+. .+.... -..+.|....+ +..+.++.+.++ .|+ ++ .+. T Consensus 332 ~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~--~g~-iS----~et 403 (452) T protein:vir:36 332 LQAMSNLALSFQRKFQSSLN-SRYKLFCELSTNVSNKDSWKDIEYTFTRNEPKDIKEQAETANIL--MGI-TS----QET 403 (452) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHH--hcc-CC----hHH Confidence 22222333334455556664 3555555432 121111 23566765555 567888888887 464 32 467 Q ss_pred HHHHhCCC-CCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 282 LRARYGLP-APAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 282 ~~e~~glp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) +.+.++.- .+..+-+.............. ...+...... ......+.+ T Consensus 404 ~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~--~~~~~~~~~~---~~~~~~~~e 452 (452) T protein:vir:36 404 ALSVISVIPDVQAEMEKIKKEEASTAIFDK--DKQPSEKGTD---TVVSETNEE 452 (452) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHh--hccCCCCccc---ccCccccCC Confidence 77887752 221111100000000000000 0000000000 000000011 No 202 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=96.20 E-value=0.00088 Score=37.33 Aligned_cols=297 Identities=10% Similarity=-0.023 Sum_probs=112.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecC------------ccceeeeeecCC-CceEEEe-----------ecCCCCCCceeeC-- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRP------------PRTISRFDVAPD-GGLVAIE-----------QWGVFGKATVRIP-- 54 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~------------~~~i~~f~~~~~-g~l~~~~-----------q~~~~g~~~~~ip-- 54 (355) |.++.- .+.......|.++. +.+|..-.|..+ +.-..+. .......+...++ T Consensus 166 ~~~~~~--~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~~e~~~~~tg 243 (518) T protein:vir:78 166 FEEIPT--SNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIG 243 (518) T ss_pred EEEeec--CCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccccccccccccccCccceeeccC Confidence 222221 11111111121111 111211111111 1000000 0000000000011 Q ss_pred -CccEEEEec-----CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 55 -VDRLVVFVN-----EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 55 -~~k~i~~~~-----~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) +.=|+.|.. ....++|+|.|.+..+....-.-...+..|..-++. |-+-+..+...-....+...... T Consensus 244 ~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~---g~~~i~v~~~~l~~~~~~~~~~~--- 317 (518) T protein:vir:78 244 LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK---TKTKIAASERMFRKKVNKSTDKE--- 317 (518) T ss_pred CccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHh---CCceeeechhHhccCCCCCCCcc--- Confidence 111344432 234578999999999988777766666667666653 32322222100000000000000 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccCC----c----eEEEeccCCCcccHHHHHHHHHHHHHHHH-hh-hhhccccCCccc Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPHG----A----NFTLTGVQGKLPEMDGPIRYHDEQIARAV-LA-HFLTLGGDKSTG 198 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~~----~----~ie~~~~~g~~~~~~~~i~~~d~~Isk~i-lg-qtlt~~~~~~~G 198 (355) ...+..+...+..+... . .|+.+...=....|...++.+-++|...+ +. +++..+ + | T Consensus 318 ---------~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~---~-~ 384 (518) T protein:vir:78 318 ---------EWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG---N-R 384 (518) T ss_pred ---------ccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcc---c-c Confidence 00000111222222111 0 13333333333456666777766766655 22 233221 1 2 Q ss_pred hhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCc-ccccEEEecCCC-ccHHHHHHHHHH Q lcl|Aclame:pro 199 SYALGDTFASFFT--GSLNAVMKHIADVTQQHVVEDLVDQ---------NWGPE-EPAPRLVPAQLG-KEQPVTAEAIRA 265 (355) Q Consensus 199 S~Al~~vh~~v~~--~~~~ad~~~i~~~ln~~li~~l~~l---------Nf~~~-~~~P~~~~~~~~-~d~~~~ae~~~~ 265 (355) -....++..+-.. ..+..-...+...|. +|+..++.+ |.... ..-+.+.|+..- .|.++.++.+++ T Consensus 385 ~~TATei~s~~~~~~~t~~~~~~~~e~al~-~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~ 463 (518) T protein:vir:78 385 EVKATEIWSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHH Confidence 2233444433322 244555566666664 466655442 11111 123577887544 467788999999 Q ss_pred HHhCCCcccchhhHHHHHHHh-CCCCCCCccccccccccccCCccccccccccccccCC Q lcl|Aclame:pro 266 LVECGAFTADPELEKDLRARY-GLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAAL 323 (355) Q Consensus 266 l~~~G~~~~~~~~~~~~~e~~-glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (355) ++.+|+... +.+++..+ +..+.+..++...-.........+.+...+......+ T Consensus 464 ~v~aGimS~----e~~i~~~~~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 464 MNSALAMSV----EEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred HHhcCCCCH----HHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 999997542 45676654 5543211111111011111111110000000000000 No 203 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=96.13 E-value=0.00096 Score=37.12 Aligned_cols=282 Identities=12% Similarity=-0.003 Sum_probs=131.3 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecC--CCceE------------------------EEeecCCCCC--Ccee Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLV------------------------AIEQWGVFGK--ATVR 52 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~--~g~l~------------------------~~~q~~~~g~--~~~~ 52 (355) .++++|.-++|...+.- .+|+.+. ..+++ ++.++ .+.+...... +..+ T Consensus 108 ~~~~v~~d~~g~~~~~~---~~p~~~~-~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (429) T protein:vir:98 108 GYELVFNDENAEAGITY---LTPLEAF-IVYDDSIRQKPLFAVRYFYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEP 183 (429) T ss_pred EEEEEEecCCCcEEEEE---EcccceE-EEEeCCCCCceEEEEEEEEecCceEEEEEEeCceEEEEEecCCceEeccccc Confidence 77888766666544332 2222221 01111 11111 1111100000 0011 Q ss_pred eCCcc--EEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHH Q lcl|Aclame:pro 53 IPVDR--LVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQ 130 (355) Q Consensus 53 ip~~k--~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~ 130 (355) .+..+ ++.| .+|+.|.|.+..+....=--...+..++...+.|..|+.+++|-..... T Consensus 184 ~~~g~vPvv~~-----~n~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~~~~~~--------------- 243 (429) T protein:vir:98 184 HPFDGVPMIEY-----VENEERQSLLASVVTLINAFNKAISEKANDVEYFADAYLKILGAELDDE--------------- 243 (429) T ss_pred ccCCccceEEe-----cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCCCcc--------------- Confidence 11222 1222 2467899999987776666667788888889999888777765432210 Q ss_pred HHHHHHHHHHHhcCCceeEEccC----CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 131 KEEGLQLAKEFRAGEAAGGYIPH----GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 131 ~~~l~~~~~~~~~G~~~~~v~p~----~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) .+..+ .. ..++.++. +.+++++........++..++.+.+.|.+.-.++.++.++.++.+.-|+ ... T Consensus 244 --~~~~~----~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~gn~Sg~Al-~~~ 314 (429) T protein:vir:98 244 --TLKSL----RD--TRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVANISDESFGTASGIAL-RYR 314 (429) T ss_pred --hhhhH----hh--CceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccccchHHHH-HHH Confidence 01111 11 12344443 3467888766666778889999999998887776665433221111121 122 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-Ccccc--cEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHH Q lcl|Aclame:pro 207 ASFFTGSLNAVMKHIADVTQQHVVEDLVDQ-NWG-PEEPA--PRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKD 281 (355) Q Consensus 207 ~~v~~~~~~ad~~~i~~~ln~~li~~l~~l-Nf~-~~~~~--P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~ 281 (355) ..-.......-.+.+...+. ++++.++.+ |.. ....+ -.+.|....+ +..+.++.+.+| .|+ ++ .+. T Consensus 315 ~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~-is----~et 386 (429) T protein:vir:98 315 LQAMDNLAKTKERKFMSGMN-RRYKLIASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQIAGNL--AGI-VS----EET 386 (429) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHH--hcc-Cc----hHH Confidence 22233334444556666664 355555554 211 11111 2566665554 667888888887 454 33 466 Q ss_pred HHHHhCC-CCCCCccccccccccccCCccccccccccccccCCcccCc Q lcl|Aclame:pro 282 LRARYGL-PAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 282 ~~e~~gl-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355) +.+.++. +.+..+=+........... ..+....+.. ...... T Consensus 387 ~~~~l~~v~d~~~E~~ri~~E~~~~~~-~~~~~~~~~~----~~~~~~ 429 (429) T protein:vir:98 387 QVGVLSIVENPQKEIERKNSDKSTLIS-RQAGGLNGQN----TTTILE 429 (429) T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHH-HHHhhhcCCC----CCCCCC Confidence 7788875 3322110000000000000 0000000000 000001 No 204 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=96.09 E-value=0.001 Score=36.97 Aligned_cols=308 Identities=9% Similarity=-0.044 Sum_probs=111.2 Q ss_pred CeEEEEeeeCCEEEEeee-----eecCccceeeeeecCCCceEEEeecCCC--CC---CceeeCCcc--EEEEecCCCCC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKL-----AWRPPRTISRFDVAPDGGLVAIEQWGVF--GK---ATVRIPVDR--LVVFVNEREGA 68 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l-----~~r~~~~i~~f~~~~~g~l~~~~q~~~~--g~---~~~~ip~~k--~i~~~~~~~~~ 68 (355) ++ .+|...........+ ....-....++.+=..+++..++..... +. ...+.+..+ ++.|+ . T Consensus 150 ~~-~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~-----n 223 (489) T protein:vir:99 150 TF-VIYDDTYQRNSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYA-----N 223 (489) T ss_pred eE-EEEcCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEee-----c Confidence 11 122110000000000 0000000111111111222222211110 00 001111111 24343 3 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCcee Q lcl|Aclame:pro 69 NWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG 148 (355) Q Consensus 69 ~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~ 148 (355) |+.|.|.+..+....=--...+..++..++.+..++.+++|-..+.....+..... .........+...+. ..-. T Consensus 224 ~~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~ 298 (489) T protein:vir:99 224 NEERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTGADENDYLDDG---RLNPNGRLAISIGFK--KAQV 298 (489) T ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccchhhhhhc---ccccccccccccccc--ccee Confidence 56788888765544433445567777777777666666665432221111000000 000000000000000 0011 Q ss_pred EEc-------cCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 GYI-------PHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHI 221 (355) Q Consensus 149 ~v~-------p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i 221 (355) +.+ ..+.+++++........++..++++.+.|.+.-.+..++.++-++..|...-+....-....+..-.+.+ T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~ 378 (489) T protein:vir:99 299 LILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQERLF 378 (489) T ss_pred eeeccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHH Confidence 111 1234566666555666788889999999987766655544322111111111111111222233334455 Q ss_pred HHHHHHHHHHHHHHh---CCCCcc-----cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhC-CCCC Q lcl|Aclame:pro 222 ADVTQQHVVEDLVDQ---NWGPEE-----PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYG-LPAP 291 (355) Q Consensus 222 ~~~ln~~li~~l~~l---Nf~~~~-----~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~g-lp~~ 291 (355) ...|. ++++.++.+ ...... .-..+.|....+ +..+.++.+.+|+ |+ ++ .+.+.+.++ +..+ T Consensus 379 ~~~l~-~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--gi-is----~et~~~~l~~v~~~ 450 (489) T protein:vir:99 379 KKGLM-RRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GI-VS----DQTIFEILNTVTGV 450 (489) T ss_pred HHHHH-HHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC----HHHHHHhcCCCCch Confidence 55654 355554443 222111 113566665554 5677888888875 64 33 345555553 3221 Q ss_pred CCcccc---ccccccccCCccccccccccccccCCcccCccccch Q lcl|Aclame:pro 292 AERDDG---ADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPP 333 (355) Q Consensus 292 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (355) ...++. ..+.............+. ......+.+..| T Consensus 451 d~~~E~~ri~~E~~~~~~~~~~~~~~~------~~~~~~~~~~~p 489 (489) T protein:vir:99 451 DAEAELKRLKEEADKKQSLPEPRLVGD------ASGQEEPTAEKP 489 (489) T ss_pred hHHHHHHHHHHHHHHHhccccccccCC------CCCCcCCCCCCC Confidence 111111 011000000000000000 111111122222 No 205 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=96.07 E-value=0.0011 Score=36.91 Aligned_cols=294 Identities=10% Similarity=-0.059 Sum_probs=118.9 Q ss_pred CeEEEEeeeCCEEEEeeeeec---------------CccceeeeeecCCCceE-----------EEeecCCCC------- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR---------------PPRTISRFDVAPDGGLV-----------AIEQWGVFG------- 47 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r---------------~~~~i~~f~~~~~g~l~-----------~~~q~~~~g------- 47 (355) -|.+||.-++|.-.+. |.++ ....+.++..+.+|... .+......+ T Consensus 122 sf~~V~~~~d~~~~~~-i~~~sp~~~~~~~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~ 200 (474) T protein:vir:81 122 AFLINTVGEDDEPEAL-IHVKDASEATGEWNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRD 200 (474) T ss_pred eeEEEecCCCCCceeE-EEEeccceEEEEEeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccC Confidence 4444443222210000 0001 11111112222232211 111100000 Q ss_pred CCceeeCCccEEEEecCCCCCccccchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHH Q lcl|Aclame:pro 48 KATVRIPVDRLVVFVNEREGANWLGQSLL-RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQW 126 (355) Q Consensus 48 ~~~~~ip~~k~i~~~~~~~~~~p~G~~ll-~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~ 126 (355) .....+| ++.|.++...+.|+|.|=+ +.+...-=--+..+...+...|-|+.|..+++|-........|..... T Consensus 201 ~~~~gvP---vV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~-- 275 (474) T protein:vir:81 201 EHVYGVP---AQVLPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKS-- 275 (474) T ss_pred CCCCCcc---eEEecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccc-- Confidence 0111133 5778888888999997643 444332222222334445677777788777776544333222221111 Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEccCCceEEEec---cC---CCcccHHHHHHHHHHHHHHHHhhhhhcc------ccC Q lcl|Aclame:pro 127 LNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTG---VQ---GKLPEMDGPIRYHDEQIARAVLAHFLTL------GGD 194 (355) Q Consensus 127 ~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~---~~---g~~~~~~~~i~~~d~~Isk~ilgqtlt~------~~~ 194 (355) .....+ +....+|.+.+.++.. ++ -..++...+++.++.-|.. +.+.+-+. .+. T Consensus 276 ------~~~~~~-------~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l~~~~~~-~a~~t~iP~~~lG~~~~ 341 (474) T protein:vir:81 276 ------VWEARL-------GRIKGLPDDADADIPQLARADVKQFPAASPDAHWSDINGLAKL-FAREASLPDTAVAISGL 341 (474) T ss_pred ------hhhhhH-------HHHhcCCCcccccccccccccccccCCCChhHHHHHHHHHHHH-HHhhhCCCHHHhccccc Confidence 111111 1122344443332221 11 1223444555555443332 33333221 111 Q ss_pred Cccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCccccc-----EEEecCCC-ccHHHHHHHHHH Q lcl|Aclame:pro 195 KSTGS-YALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQN--WGPEEPAP-----RLVPAQLG-KEQPVTAEAIRA 265 (355) Q Consensus 195 ~~~GS-~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN--f~~~~~~P-----~~~~~~~~-~d~~~~ae~~~~ 265 (355) .+.+| -|+. ...+-+....+.-.+.+...|. ++++..+.+. +......+ +.+|...+ ....+.++++.| T Consensus 342 ~np~SaeAi~-a~~~~l~~kae~k~~~fg~~l~-~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~K 419 (474) T protein:vir:81 342 SNPTSAESYD-ASQYELIAEAEGAVDDFTPALR-KAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMK 419 (474) T ss_pred ccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCccccchhhccceeEecCCCccCHHHHHHHHHH Confidence 12222 2332 2233334445556667777885 4777666663 22221111 34554443 456788999999 Q ss_pred HHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCC---c-cccccccccccc Q lcl|Aclame:pro 266 LVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAG---R-RRAKRLPGQRQG 320 (355) Q Consensus 266 l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~ 320 (355) |.++|..++. .+-+++.+|+.+.+-.. .........+. . ...+..++.++. T Consensus 420 l~~a~~~~~~---~~~~~~~lg~t~~~i~~-~~~~~~~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 420 QLAAVPWLAE---TEVGLELIGLTPQQARR-AMADKRRVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred HHhcccCCCc---HHHHHhhcCCCHHHHHH-HHHHHHHHhHHHHHHHHHhcCCCCCCCC Confidence 9999865543 45678889986332110 00000000000 0 000111111110 No 206 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=96.06 E-value=0.0011 Score=36.90 Aligned_cols=296 Identities=11% Similarity=0.056 Sum_probs=126.1 Q ss_pred CeEEEEeee-CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIE-NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~-~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) |++.||-.. ++. +.++. ..+|....... +. .....+| |++.|+....|+.||.|....+ T Consensus 213 v~~~v~~~~~~~~-------------~~~~~-e~~g~~~~~~~-~~--~~~~~~P---~i~~Rw~~~~ge~YGrgp~~~~ 272 (535) T protein:vir:15 213 VYTHVYLDEESGD-------------YLKYE-EVEDVEIDGSD-AT--YPTDAMP---YIPVRMVRIDGESYGRSYCEEY 272 (535) T ss_pred EEEEEEEecCCCc-------------EEEEE-EeeCccccccc-cc--cccccCC---ceeeeeeecCCCccccchHHHH Confidence 444443221 111 11221 11222111110 00 1112344 5889999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) +....--+...+.-+.++++-.-| |+...+.+... . .++.-|...+++-...-++.. T Consensus 273 l~D~k~L~~l~~~~l~~~~~~~~p-~~lv~~~g~~~------------------~----~~l~~~~~g~~v~g~~~~v~~ 329 (535) T protein:vir:15 273 LGDLRSLENLQEAIVKMSMISAKV-IGLVNPAGITQ------------------P----RRLTKAQTGDFVPGRREDIDF 329 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ceeeccccccc------------------c----hhcccCCceeeecCCccccee Confidence 999999998989999999986544 44332222111 0 112113233344334455555 Q ss_pred ec--cCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 TG--VQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG--SLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 160 ~~--~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~--~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +. ..++...-...|+.+...|.++++...++... ++..-..||+....+. .+-.-...+...|-.-||.+++. T Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~~~~~~---~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~ 406 (535) T protein:vir:15 330 LQLEKQADFTVAKAVSDQIEARLSYAFMLNSAVQRT---GERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLK 406 (535) T ss_pred eecccccchhHHHHHHHHHHHHHHHHHhhhhcccCC---CccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH Confidence 54 23444456788999999999999887665321 1222334544333222 11122222222222223332222 Q ss_pred h----C-CCC-cccccEEEecC-CC-----ccHHHHHHHHHHHHhCCCcccc-----hhhHHHHHHHhCCCCC--CCccc Q lcl|Aclame:pro 236 Q----N-WGP-EEPAPRLVPAQ-LG-----KEQPVTAEAIRALVECGAFTAD-----PELEKDLRARYGLPAP--AERDD 296 (355) Q Consensus 236 l----N-f~~-~~~~P~~~~~~-~~-----~d~~~~ae~~~~l~~~G~~~~~-----~~~~~~~~e~~glp~~--~~~~~ 296 (355) + + +++ ....-+++|.. .. .+...+...++.+..++-.+.+ +...+++.+.+|+|.. -..++ T Consensus 407 il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~e 486 (535) T protein:vir:15 407 QLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDE 486 (535) T ss_pred HHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHH Confidence 1 1 111 01111222221 11 1222333444455544422222 2235678899999842 12222 Q ss_pred cccccccccCCc---cccccccccccccCCcccCccccchhHHHHHhHhhhchHH Q lcl|Aclame:pro 297 GADAAAAKAAGR---RRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAH 348 (355) Q Consensus 297 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (355) .+.......... .......+....+ +....++....+....-..+. T Consensus 487 ev~~~~~q~~~~~~~~~~a~~~g~~~~~------~~~~~p~~~~~~~~~~g~~~~ 535 (535) T protein:vir:15 487 QKQALMMQDAAQTGIENAAATGGAGVGA------LATSSPEAMQGAAAQAGLDAT 535 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc------hhccChHHHHHHHhccCCCCC Confidence 222111111110 0001111111111 111122222222222111111 No 207 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=96.05 E-value=0.0011 Score=36.87 Aligned_cols=305 Identities=13% Similarity=0.053 Sum_probs=113.4 Q ss_pred CeEEEEeeeCCEEEEe-------------eeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLG-------------KLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREG 67 (355) Q Consensus 1 V~Eivw~~~~g~~~~~-------------~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~ 67 (355) ++ .+|....+.+... .+....+..+.+|.- ..++...... ....++.-=++.|.++.+. T Consensus 150 ~~-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~------~~~~~g~vPvv~~~n~~~~ 221 (485) T protein:vir:10 150 MY-AEIDPRIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYR-VENEWQEWFN------NPHGLGVVPVVPIPNRTRL 221 (485) T ss_pred eE-EEEcCCCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEE-cCCceEEecc------ccCCCCcccEEEecccccc Confidence 11 2332222211100 000000111111211 1122111110 1112222234778888888 Q ss_pred CccccchhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 68 ANWLGQSLLRQAYKNWL-LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA 146 (355) Q Consensus 68 ~~p~G~~ll~~~~~~~~-~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~ 146 (355) +.++|.|-+.......+ --...+...+...|-|+.|..+++|.........+.. .. .. +....+ T Consensus 222 ~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~-~~--------~~------~~~~~~ 286 (485) T protein:vir:10 222 SDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPET-GQ--------TL------FDAYLA 286 (485) T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCcccccccccc-cc--------hh------hhhccc Confidence 88999987654221111 1233455666778888777666665432221111111 00 00 111112 Q ss_pred eeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhc---cccCC-ccch-hhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 AGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLT---LGGDK-STGS-YALGDTFASFFTGSLNAVMKHI 221 (355) Q Consensus 147 ~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt---~~~~~-~~GS-~Al~~vh~~v~~~~~~ad~~~i 221 (355) . +....+.+.++.+... .+...++++++.-|.+......++ .++.+ +..| -|+- ....-+...++.-.+.+ T Consensus 287 ~-i~~~~~~d~k~~q~~~--~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~-~~~~~l~~k~~~k~~~f 362 (485) T protein:vir:10 287 R-ILAFEDAEGKIQQFSA--AELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIR-AAESRLIKKVERKNSIF 362 (485) T ss_pred c-eeccCCCCceEEeecc--cchHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHH-HHHHHHHHHHHHHHHHH Confidence 2 2333445566655432 233444444444443332221111 11110 0011 2222 22233333344455566 Q ss_pred HHHHHHHHHHHHHHhCCCCcc--c--ccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccc Q lcl|Aclame:pro 222 ADVTQQHVVEDLVDQNWGPEE--P--APRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD 296 (355) Q Consensus 222 ~~~ln~~li~~l~~lNf~~~~--~--~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~ 296 (355) ...|++ +++.++.+..+... . --++.|....+ ...+.++++.+|+++|.... +.+.+++.+|+.+....+. T Consensus 363 ~~~l~~-~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~---s~et~~~~lg~~~~~~~~~ 438 (485) T protein:vir:10 363 GGAWEE-AMRLAYRMMKGGDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVI---PRERARKDMGYSIAEREEM 438 (485) T ss_pred HHHHHH-HHHHHHHHhCCCCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCC---CHHHHHHhCCCCHhHHHHH Confidence 666654 56655554322211 1 11456654444 66788999999999884222 2467788888864321110 Q ss_pred -----ccccccccc--CCccccccccccccccCCcccCccccchhHHHH Q lcl|Aclame:pro 297 -----GADAAAAKA--AGRRRAKRLPGQRQGAALPSRSPRADPPRRRGP 338 (355) Q Consensus 297 -----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355) ......... ....+....++... ......+.+......+. T Consensus 439 ~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 439 RRWDEEEAAMGLGLIGTMVDPNPTVPGSPS--PAPAPKPAALESGGDAA 485 (485) T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCC--ccccccCcCCCCCCCCC Confidence 000000000 00000000000000 00000000000000000 No 208 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=96.02 E-value=0.0011 Score=36.79 Aligned_cols=291 Identities=13% Similarity=0.011 Sum_probs=116.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcccee---------------eeeecCCC----------ceEEEeecCCCCC---Cce- Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTIS---------------RFDVAPDG----------GLVAIEQWGVFGK---ATV- 51 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~---------------~f~~~~~g----------~l~~~~q~~~~g~---~~~- 51 (355) -+++||.-.+|...+. ..+|..+. ++..+.++ ....+...+..+. +.. T Consensus 107 a~~~v~~d~~g~~~i~---~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~ 183 (441) T protein:vir:80 107 SFVAIIPHGDGTVSVR---PQSPKNCTGKFSADGSRLDAGLVVQQTCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIP 183 (441) T ss_pred eEEEEEeCCCCceEEE---EEccceEEEEEeCCCCceeEEEEEEEEecCceEEEEEEecCeEEEEEEcCCcceeeccccc Confidence 4566665545543322 11222110 11111111 0111111111110 111 Q ss_pred -eeCCccEEEEecCCCCCccccchhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHH Q lcl|Aclame:pro 52 -RIPVDRLVVFVNEREGANWLGQSLLRQAYKNWL-LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLND 129 (355) Q Consensus 52 -~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~-~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~ 129 (355) .++.--++.|.++.+.+.|+|.|-+.......+ .-...+..+....|.|+.+..+++|..... .... T Consensus 184 ~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G~~~~~---~~~~-------- 252 (441) T protein:vir:80 184 NVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTGVSADE---FSQP-------- 252 (441) T ss_pred cCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeecCCccc---cccc-------- Confidence 122222466777888899999886543222211 223445567778888887777666532111 1100 Q ss_pred HHHHHHHHHHHHhcCCceeEEccCCce---EEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccc----hhhh Q lcl|Aclame:pro 130 QKEEGLQLAKEFRAGEAAGGYIPHGAN---FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTG----SYAL 202 (355) Q Consensus 130 ~~~~l~~~~~~~~~G~~~~~v~p~~~~---ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~G----S~Al 202 (355) ..+ + .......+|.+.+ +++.+.. ..+.+.++++++.-|.+......+....-++.+ |... T Consensus 253 ----~~~----~--~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~A 320 (441) T protein:vir:80 253 ----GWV----L--SMASVWAVDKDDDGDTPNVGSFP--VNSPTPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPSGEA 320 (441) T ss_pred ----hhh----h--cccccccCCCCCCCCcceeEecC--ccchHHHHHHHHHHHHHHhcccCCCHHHhccCCCcchHHHH Confidence 000 0 1123344554433 3443322 234455555555555444333222211111111 2111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcc---cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccch Q lcl|Aclame:pro 203 GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ--NWGPEE---PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADP 276 (355) Q Consensus 203 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l--Nf~~~~---~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~ 276 (355) -.....-....+..-.+.+...|.+ +++.++.+ |.+... .-.++.|....+ +..+.++.+.+|+.+|.... T Consensus 321 l~~~~~~l~~k~~~~~~~f~~~l~~-~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~-- 397 (441) T protein:vir:80 321 LAAEESRLVKRAERRQTSFGQGWLS-VGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAATADAVTKLVGAGILPA-- 397 (441) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccc-- Confidence 1122222233333334444555543 45555544 222211 112566765554 66788999999999997543 Q ss_pred hhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhch Q lcl|Aclame:pro 277 ELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHP 346 (355) Q Consensus 277 ~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (355) +.+.+++.+|+.+.+ -+.......... . +.. +..+.....+... T Consensus 398 -s~~~~~~~l~~~~~e-~~~~~~e~~e~~--~-~~~---------------------~~~~~~~~~~~~~ 441 (441) T protein:vir:80 398 -DSRTVLEMLGLDDVQ-VEAVMRHRAESS--D-PLA---------------------VLAGAISRQTNEV 441 (441) T ss_pred -cHHHHHHhCCCCHHH-HHHHHHHHHHHH--H-HHH---------------------HHhhhhhcccccC Confidence 235678888885321 111110000000 0 000 0000000000000 No 209 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=95.53 E-value=0.0019 Score=35.50 Aligned_cols=299 Identities=10% Similarity=0.010 Sum_probs=119.9 Q ss_pred CeEEEEeeeC---------------------CEE-EEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccE Q lcl|Aclame:pro 1 MFEQVYRIEN---------------------GRA-RLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRL 58 (355) Q Consensus 1 V~Eivw~~~~---------------------g~~-~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~ 58 (355) |-+|+.+.+= ..+ ....+.+++-+.. ++. ..+|..+... .+..+ .... -| T Consensus 175 vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~-~~~-~~~g~~~~~~-~~~~~--~~e~---P~ 246 (522) T protein:vir:94 175 ILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYL-RYE-EVEGIEVTGT-DGSYP--LTAC---PY 246 (522) T ss_pred eEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCcee-EEe-eccCceeccc-CCCCc--cccC---Cc Confidence 2222221110 000 0000111111111 111 2233332211 11111 1223 36 Q ss_pred EEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 59 VVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLA 138 (355) Q Consensus 59 i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~ 138 (355) ++.|+....|+.||.|....++....--+...+.-+.++++-.-| |+...+.+.... T Consensus 247 ~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p-~~~v~~~g~~~~---------------------- 303 (522) T protein:vir:94 247 IPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKV-VGLVNPNGITQP---------------------- 303 (522) T ss_pred eeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeecccccccc---------------------- Confidence 899999999999999999999999999999999999999986554 443322221110 Q ss_pred HHHhcCCceeEEccCCceEEEecc--CCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH--HH Q lcl|Aclame:pro 139 KEFRAGEAAGGYIPHGANFTLTGV--QGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG--SL 214 (355) Q Consensus 139 ~~~~~G~~~~~v~p~~~~ie~~~~--~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~--~~ 214 (355) .++..|...+++-....++..+.. .++...-...|+.+...|..+++...++.. +++..-..||+....+. .+ T Consensus 304 ~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~---~~~r~TAtEV~~r~~E~~~~L 380 (522) T protein:vir:94 304 RRLNKAATGEFVAGRVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAFLLNSAVQR---NAERVTAEEIRYVAGELEATL 380 (522) T ss_pred hheeccCCceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhccC---CCccccHHHHHHHHHHHHHHH Confidence 111112233344434445666543 233333567899999999999988766542 12223345554433322 11 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CCccccc----EEEecC-CC-----ccHHHHHHHHHHHHhCCCcccc-----hh Q lcl|Aclame:pro 215 NAVMKHIADVTQQHVVEDLVDQNW--GPEEPAP----RLVPAQ-LG-----KEQPVTAEAIRALVECGAFTAD-----PE 277 (355) Q Consensus 215 ~ad~~~i~~~ln~~li~~l~~lNf--~~~~~~P----~~~~~~-~~-----~d~~~~ae~~~~l~~~G~~~~~-----~~ 277 (355) -.-...+...|-.-||...+.+-+ +.-.+.| ++.|.. .+ .+...+...++.+.+++-...+ +. T Consensus 381 G~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s~La~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~ 460 (522) T protein:vir:94 381 GGVYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVSTGLEALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPT 460 (522) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccEEeeEecHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHH Confidence 111222222222223333222211 1101112 222211 11 1222233334444444422221 12 Q ss_pred hHHHHHHHhCCCCCC--CccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 278 LEKDLRARYGLPAPA--ERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 278 ~~~~~~e~~glp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) ..+++.+.+|+|.+. ..++.+....+.+......... ......+..+ ...-.++.+ T Consensus 461 ~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~----------------~~~~~~~~~a------~~~~~~~~~ 518 (522) T protein:vir:94 461 LKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQG----------------ASAAGANMGA------AVGQGAGED 518 (522) T ss_pred HHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhhh------hhhcccchh Confidence 346678888985321 1111111111110000000000 0000000000 000000010 No 210 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=95.34 E-value=0.0023 Score=35.10 Aligned_cols=261 Identities=12% Similarity=-0.002 Sum_probs=112.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccc---------------eeeeeecCCCceEE-----------EeecCCCCCCce--e Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRT---------------ISRFDVAPDGGLVA-----------IEQWGVFGKATV--R 52 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~---------------i~~f~~~~~g~l~~-----------~~q~~~~g~~~~--~ 52 (355) -|..||.-++|... |.+++|+. +..+.-+..+.... +.+. ..+...+ + T Consensus 104 sf~~v~~~~dg~~~---i~~~sp~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~ 179 (409) T protein:vir:94 104 SFTYISKGENDAVR---LQVIEAVNATGIIDPITGLLTEGYAVLERDENNNVVLEAHFLPDRTDYYYRD-SRNNISIANP 179 (409) T ss_pred eeEEEecCCCCceE---EEEeccceEEEEEecCCCceeeeEEEEEecCCCceEEEEEEecCcEEEEEec-CceeEeeeCC Confidence 45555544444311 11111111 11111111121100 0000 0000011 1 Q ss_pred eCCccEEEEecCCCCCccccchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHH Q lcl|Aclame:pro 53 IPVDRLVVFVNEREGANWLGQSLL-RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQK 131 (355) Q Consensus 53 ip~~k~i~~~~~~~~~~p~G~~ll-~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~ 131 (355) ++.--++.|.++.+-+.|+|.|-+ +.+-..-=--+..+...+...|-|+.|..+++|-.. |....+ T Consensus 180 ~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~------d~~~~~------- 246 (409) T protein:vir:94 180 TGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSD------DAEPME------- 246 (409) T ss_pred CCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCC------CCcccc------- Confidence 122225677888888899998865 334332222223334455667777788777776421 111000 Q ss_pred HHHHHHHHHHhcCCceeEEccCC---ceEEEeccC-CCcccHHHHHHHHHHHHHHHHhhhhhc-cccCC-ccch-hhhHH Q lcl|Aclame:pro 132 EEGLQLAKEFRAGEAAGGYIPHG---ANFTLTGVQ-GKLPEMDGPIRYHDEQIARAVLAHFLT-LGGDK-STGS-YALGD 204 (355) Q Consensus 132 ~~l~~~~~~~~~G~~~~~v~p~~---~~ie~~~~~-g~~~~~~~~i~~~d~~Isk~ilgqtlt-~~~~~-~~GS-~Al~~ 204 (355) .... ..+....+|++ ..+++-+.. .+...|...++.+-++++-. .+=... .+..+ +.+| -|+.. T Consensus 247 -~~~~-------~~~~i~~~~~d~dg~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~-t~lP~~~lg~~~~NpsSa~Al~a 317 (409) T protein:vir:94 247 -TWKA-------TVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGE-TGLTLDDLGFVSDNPSSVEAIKA 317 (409) T ss_pred -hhhh-------hHHHhhcCCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhh-cCCCHHHhccccCchhHHHHHHH Confidence 0111 11123445543 234443332 23334544454444454432 111111 11100 1112 22221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcc-c--ccEEEecCCC-cc---HHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 205 TFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ-N-WGPEE-P--APRLVPAQLG-KE---QPVTAEAIRALVECGAFTAD 275 (355) Q Consensus 205 vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~l-N-f~~~~-~--~P~~~~~~~~-~d---~~~~ae~~~~l~~~G~~~~~ 275 (355) ..+-+....+.-.+.+...+. ++++..+.+ + ++... . -.++.|.+.. .+ ....|+.+.||+.+|..+. T Consensus 318 -~~~~L~~~a~~k~~~fg~~~~-~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~- 394 (409) T protein:vir:94 318 -SHENLRLAGRKAQRSLGAGLL-NVAYLAACLRDDAPYLREQFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFI- 394 (409) T ss_pred -HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCccccccccceEEeccCCCcchHHHHHHHHHHHHHHHhccccc- Confidence 222222333445556677775 466654443 2 32211 1 1245555332 22 2456888999999996443 Q ss_pred hhhHHHHHHHhCCCCCC Q lcl|Aclame:pro 276 PELEKDLRARYGLPAPA 292 (355) Q Consensus 276 ~~~~~~~~e~~glp~~~ 292 (355) ..+.+++.+|+..++ T Consensus 395 --~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 395 --NKDTIRDLTGIEGGE 409 (409) T ss_pred --chhHHHHHcCCCCCC Confidence 246899999997765 No 211 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=95.10 E-value=0.0028 Score=34.61 Aligned_cols=304 Identities=10% Similarity=0.008 Sum_probs=123.7 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCc-eEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG-LVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~-l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) |.|+...++ .. ...+.++.....|. ++.....+. . ...| |+++++....+..||.|....+ T Consensus 284 v~E~~~~~d--------~e---~~~~~~~~v~~~g~~il~~~~~~~--~--~~~P---f~~~~~~~~~~~~yG~g~~~~~ 345 (651) T protein:vir:80 284 LLEYWGDIH--------LE---NKTYHDVVVTIMGNEVLRFEQNPY--W--CGRP---FVIGTYIPTARQPYAMGALQPN 345 (651) T ss_pred EEEEEEEee--------cc---CCceEEEEEEEcCcEEecccccCC--C--CCCC---eeeecceecCccccCCChHHHH Confidence 333311111 00 00011111112222 221111110 0 1123 6888888889999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) ...-...+...+..+..+.+...|.-. ...+.. ..+ ..+ . . +..++++.....++.. T Consensus 346 ~~~q~~ln~l~~~~ld~~~~~~~~~~~--v~~d~~---~~~--------------~~l-~-~--~pg~vi~~~~~~~~~~ 402 (651) T protein:vir:80 346 LGMLHELNIITNQRLDNLELAIDQMYT--LRSDGL---LQP--------------EDV-Y-T--EPGKVFLVSDHGDLQP 402 (651) T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcEE--ecCCcc---ccH--------------HHh-h-c--CCCceEEecCCCCcee Confidence 999999999999999999987665322 222110 100 011 1 1 2223444555556666 Q ss_pred eccC-CCcccHHHHHHHHHHHHHHHHhhhhhccccCCcc-chhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 TGVQ-GKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKST-GSYALGDTFAS--FFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 160 ~~~~-g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~-GS~Al~~vh~~--v~~~~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +... ........++++++..|....+...+..+....+ +...+++++.. .....+..-.+.+..++-+.|+..++. T Consensus 403 l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~ 482 (651) T protein:vir:80 403 LANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMH 482 (651) T ss_pred eccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 6442 2333456789999999988876655443221111 22222444332 233445555566666555556666666 Q ss_pred hC--CCCcccccEEEe----------------------cCCCc-----cHHHHHHHHHHHHhCCCcccc-------hhhH Q lcl|Aclame:pro 236 QN--WGPEEPAPRLVP----------------------AQLGK-----EQPVTAEAIRALVECGAFTAD-------PELE 279 (355) Q Consensus 236 lN--f~~~~~~P~~~~----------------------~~~~~-----d~~~~ae~~~~l~~~G~~~~~-------~~~~ 279 (355) ++ |+.....|++.- ..... .....+... .+.+++...+. .... T Consensus 483 l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~-~~~q~~~~~p~~~~~~~~~~~~ 561 (651) T protein:vir:80 483 LVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVRLVPIGSDHVIERKQYIEDRL-TFIQAVAQVPEMGQLVDYKRIL 561 (651) T ss_pred HHHHhcCcccceeecccccccccccccCccceeeeeeeeeccHHHHHHHHHHHHHHH-HHHHhhccCCccchhhhHHHHH Confidence 55 333332333210 00011 001112222 22332222221 1112 Q ss_pred HHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchhHHHH--HhHhhhc---hHHhhhcCC Q lcl|Aclame:pro 280 KDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGP--LRRRPRH---PAHRRCAPD 354 (355) Q Consensus 280 ~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~ 354 (355) ..+.+..|++.+..- +......++++.. +....... ....+++....... ..+...+ ....+.+-+ T Consensus 562 ~~l~~~~g~~~~~~~---l~~~~q~~~~~~~----~~~~~q~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (651) T protein:vir:80 562 VDLLQHWGFEEPEAY---LKQQDQQAPANPQ----EALLSQAK--DVGGQAMSNMLQNQLQADGGTQMMSEMYGTPNADQ 632 (651) T ss_pred HHHHHHcCCCCcHHh---cCCCccchhhhhh----HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 346778898765321 1111111111000 00000000 00000000000000 0000000 000011111 Q ss_pred C Q lcl|Aclame:pro 355 G 355 (355) Q Consensus 355 ~ 355 (355) + T Consensus 633 ~ 633 (651) T protein:vir:80 633 M 633 (651) T ss_pred H Confidence 1 No 212 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=94.92 E-value=0.0032 Score=34.28 Aligned_cols=296 Identities=11% Similarity=0.064 Sum_probs=124.9 Q ss_pred CeEEEEeee-CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIE-NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~-~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) |+..||... ++.| .++. ..+|....... + +.....+| |++.|+....|+.||.|....+ T Consensus 213 v~~~v~~~~~~~~~-------------~~~~-~~~~~~~~~~~-~--~~~~~~~P---~i~~Rw~~~~ge~YGrgp~~~~ 272 (535) T protein:vir:33 213 VYTHVYLDEESGDY-------------LKYE-EVEDVEIDGSD-A--TYPTDAMP---YIPVRMVRIDGESYGRSYCEEY 272 (535) T ss_pred EEEEEEeeCCCCcE-------------EEEE-EEeCccccccc-c--ccccccCC---ceeeeeeecCCCccccchHHHH Confidence 333333211 1111 1111 11122111110 0 00112244 5889999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) +....--+...+.-+.++++-.-| |+...+.+... . .++.-|...+++-...-++.. T Consensus 273 l~D~k~L~~l~~~~l~~~~~~~~p-~~lv~~~g~~~------------------~----~~~~~~~~g~~v~g~~~~v~~ 329 (535) T protein:vir:33 273 LGDLRSLENLQEAIVKMSMISAKV-IGLVNPAGITQ------------------P----RRLTKAQTGDFVPGRREDIDF 329 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ceeeccccccc------------------h----hhcccCCceeeecCCccccee Confidence 999999998989999999986544 44332222110 1 112223233344334455555 Q ss_pred ec--cCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 TG--VQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG--SLNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 160 ~~--~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~--~~~ad~~~i~~~ln~~li~~l~~ 235 (355) +. ..++...-...|+.+...|.++++...++... ++..-..||+....+. .+-.-...+...|-.-||.+++. T Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~~~~~~---~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~ 406 (535) T protein:vir:33 330 LQLEKQADFTVAKAVSDQIEARLSYAFMLNSAVQRT---GERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLK 406 (535) T ss_pred eecccccchhHHHHHHHHHHHHHHHHHhhhhcccCC---CccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH Confidence 54 23444456788999999999999887665321 1222334444333222 11122222222222223333222 Q ss_pred h----C-CCC-cccccEEEecC-CC-----ccHHHHHHHHHHHHhCCCcccc-----hhhHHHHHHHhCCCCC--CCccc Q lcl|Aclame:pro 236 Q----N-WGP-EEPAPRLVPAQ-LG-----KEQPVTAEAIRALVECGAFTAD-----PELEKDLRARYGLPAP--AERDD 296 (355) Q Consensus 236 l----N-f~~-~~~~P~~~~~~-~~-----~d~~~~ae~~~~l~~~G~~~~~-----~~~~~~~~e~~glp~~--~~~~~ 296 (355) + + +++ ....-+++|.. .. .+...+...++.+..++-.+.+ +...+++.+.+|+|.. ...++ T Consensus 407 il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~~d~~id~d~~~~~~a~~~Gvp~~~i~~~~e 486 (535) T protein:vir:33 407 QLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDE 486 (535) T ss_pred HHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhhChhhhhccCCHHHHHHHHHHHcCCCHhHhcCCHH Confidence 1 1 111 01111222221 11 1222333444455544422222 2235678899999842 12222 Q ss_pred cccccccccCC---ccccccccccccccCCcccCccccchhHHHHHhHhhhchH Q lcl|Aclame:pro 297 GADAAAAKAAG---RRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPA 347 (355) Q Consensus 297 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355) .+......... ..+.....+....+. +........++......... T Consensus 487 e~~~~~~q~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~g~~~~ 535 (535) T protein:vir:33 487 QKQALMMQDAAQTGVENAAAAGGAGVGAL-----ATSSPEAMQGAAAKAGLNAT 535 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcch-----hhcCChhHHHHHHhccCCCC Confidence 22211111100 011111111111111 11111112222222211111 No 213 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=94.74 E-value=0.0036 Score=33.98 Aligned_cols=262 Identities=12% Similarity=-0.016 Sum_probs=114.2 Q ss_pred CeEEEEeeeCCEEEEeeeeecCcc---------------ceeeeeecCCCceE-----------EEeecCC-CCCCceee Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPR---------------TISRFDVAPDGGLV-----------AIEQWGV-FGKATVRI 53 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~---------------~i~~f~~~~~g~l~-----------~~~q~~~-~g~~~~~i 53 (355) =|..||.-++|... |.+++|+ .+..+..+.+|... ...+... ......++ T Consensus 104 sf~~v~~~~dg~~~---i~~~sP~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (409) T protein:vir:16 104 SFTYISKGENDAVR---LQVIEATNATGIIDPITGLLTEGYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPT 180 (409) T ss_pred eeEEEecCCCCceE---EEEEcccceEEEeecccccceeeeEEEEecCCCceEEEEEEecCcEEEEEecCccccceecCC Confidence 44555544444311 1111111 11111111122110 0001000 00011122 Q ss_pred CCccEEEEecCCCCCccccchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHH Q lcl|Aclame:pro 54 PVDRLVVFVNEREGANWLGQSLL-RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKE 132 (355) Q Consensus 54 p~~k~i~~~~~~~~~~p~G~~ll-~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~ 132 (355) +.--++.|.++.+-+.|+|.|-+ +.+-..----+..+.......|=|+.|..+++|-.. |....+ T Consensus 181 g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~------d~~~~~-------- 246 (409) T protein:vir:16 181 GNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSD------DAEPME-------- 246 (409) T ss_pred CCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCC------CCCccc-------- Confidence 22235778888888899998754 444333222222334445566767777777776421 111000 Q ss_pred HHHHHHHHHhcCCceeEEccCC---ceEEEeccC-CCcccHHHHHHHHHHHHHHHHhhhhhc-cccCC-ccch-hhhHHH Q lcl|Aclame:pro 133 EGLQLAKEFRAGEAAGGYIPHG---ANFTLTGVQ-GKLPEMDGPIRYHDEQIARAVLAHFLT-LGGDK-STGS-YALGDT 205 (355) Q Consensus 133 ~l~~~~~~~~~G~~~~~v~p~~---~~ie~~~~~-g~~~~~~~~i~~~d~~Isk~ilgqtlt-~~~~~-~~GS-~Al~~v 205 (355) .... ..+....+|++ ...++-+.. .+...|...++.+-++++-.---+ +. .+..+ +-+| -|+. . T Consensus 247 ~~~~-------~~~~i~~~~~d~~g~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP-~~~lg~~~~NpsSa~Ai~-a 317 (409) T protein:vir:16 247 TWKA-------TVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLT-LDDLGFVSDNPSSVEAIK-A 317 (409) T ss_pred hhhh-------hhhHhhccCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCC-HHHcccccCchhHHHHHH-H Confidence 0110 11223445543 334443332 233445555555555555421111 11 11100 1122 2222 2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCccc---ccEEEecCCC-cc---HHHHHHHHHHHHhCCCcccch Q lcl|Aclame:pro 206 FASFFTGSLNAVMKHIADVTQQHVVEDLVDQ--NWGPEEP---APRLVPAQLG-KE---QPVTAEAIRALVECGAFTADP 276 (355) Q Consensus 206 h~~v~~~~~~ad~~~i~~~ln~~li~~l~~l--Nf~~~~~---~P~~~~~~~~-~d---~~~~ae~~~~l~~~G~~~~~~ 276 (355) ..+-+....+.-.+.+...+. ++++..+.+ |++.... --++.|.+.. ++ ....|+++.||..+|..+. T Consensus 318 ~~~~L~~ka~~k~~~fg~~l~-~~~rla~~~~~~~~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~-- 394 (409) T protein:vir:16 318 SHENLRLAGRKAQRSLGAGLL-NVAYLAACLRDDVPYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFI-- 394 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhccccc-- Confidence 223333334445566677774 466665544 3332211 1144555432 22 3567899999999986443 Q ss_pred hhHHHHHHHhCCCCCC Q lcl|Aclame:pro 277 ELEKDLRARYGLPAPA 292 (355) Q Consensus 277 ~~~~~~~e~~glp~~~ 292 (355) ..+.+++.+|+..++ T Consensus 395 -~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 395 -NKDTIRDLTGIKGAE 409 (409) T ss_pred -chhHHHHhccCCCCC Confidence 246789999997655 No 214 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=94.45 E-value=0.0044 Score=33.52 Aligned_cols=318 Identities=11% Similarity=0.005 Sum_probs=117.2 Q ss_pred CeE-------------EEEeeeCCEEEEeeeeecCc---cc-------------eeeeeecCCCc-eEEEeecCCCCCCc Q lcl|Aclame:pro 1 MFE-------------QVYRIENGRARLGKLAWRPP---RT-------------ISRFDVAPDGG-LVAIEQWGVFGKAT 50 (355) Q Consensus 1 V~E-------------ivw~~~~g~~~~~~l~~r~~---~~-------------i~~f~~~~~g~-l~~~~q~~~~g~~~ 50 (355) +.| ..|+..+.. ...++..... +. +..+...-+|+ ++....+.. . T Consensus 233 ~~eg~~~~d~v~~~~~~~~~~~~~d-~~~d~~~~~~~~~~~~e~~gd~~~d~~~~~~~~~~~~g~~il~~~~~~~----~ 307 (641) T protein:vir:94 233 VTSGYYDLDLTQVEQYVDYKFADPD-TPKDVNGTDTSGWDIIEYYGPLLVEGVQFWCVHAVFYGKQLIRLSDSKY----W 307 (641) T ss_pred HhcCCCChhhcchhhcccccccccc-cccccccccccccceeeeeeeeccCCCceeeEEEEEeCCEEeecccccc----c Confidence 111 111110000 0000000000 00 00011111122 222111100 0 Q ss_pred eeeCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHH Q lcl|Aclame:pro 51 VRIPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQ 130 (355) Q Consensus 51 ~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~ 130 (355) -.+| |+++++....++.||.|....+.....-++...+.-+..+++...|+.+. ...+.... T Consensus 308 d~~P---f~~~r~~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~-~~~~~~~~-------------- 369 (641) T protein:vir:94 308 CGSP---FVTTTLLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTL-VEDGILKR-------------- 369 (641) T ss_pred CcCC---eEEecceecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeee-cccccccc-------------- Confidence 0123 78999999999999999999999999999999999999998876653222 11111000 Q ss_pred HHHHHHHHHHHhcCCceeEEccCCceEEEeccCC-CcccHHHHHHHHHHHHHHHHhhhhhccccCCccchh-hhHHHHHH Q lcl|Aclame:pro 131 KEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQG-KLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSY-ALGDTFAS 208 (355) Q Consensus 131 ~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g-~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~-Al~~vh~~ 208 (355) .+++.+..+.+.......+..+.... +.......+++++..|.+++....+........|.+ -+.+|..- T Consensus 370 --------~~l~~~PG~ii~~~~~~~v~pl~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~ 441 (641) T protein:vir:94 370 --------EDVKAKPGAVFKVAQHGSLQPIDMGRQDFVVTYQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGV 441 (641) T ss_pred --------ceeeccCCcceeeCCCCcceeecCCccccchhHHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHH Confidence 01111222233334444455553321 222345678888888888876655433221112221 22334321 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------CCCccc--c-cEEEecCCCccH-HHHHH Q lcl|Aclame:pro 209 --FFTGSLNAVMKHIADVTQQHVVEDLVDQN---------------------WGPEEP--A-PRLVPAQLGKEQ-PVTAE 261 (355) Q Consensus 209 --v~~~~~~ad~~~i~~~ln~~li~~l~~lN---------------------f~~~~~--~-P~~~~~~~~~d~-~~~ae 261 (355) .....+..-.+.+++.+-..|+..++.+| |.+..+ + ..+.+....... .+.+. T Consensus 442 ~~e~~~~l~~i~r~l~~e~l~pll~~~~~~~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L~~~~~iv~l~~~q~~~~~~ 521 (641) T protein:vir:94 442 RDAGGNRLSSVHTHIEDSSTLPLLNKVFSLLQQFYVTPETIRMYVPEEQMDGFFEVSPEYLHYPYKFLALGANYVVERER 521 (641) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhchhhhcccCCCCCccceeeeeeEeecchhHHHHHHH Confidence 11222333334444433333444433332 211110 0 112121222111 11122 Q ss_pred HHHHH---Hh-CCCcccc-------hhhHHHHHHHhCCCCCCCcc--ccccccccccCCccccccccccccccCCcccCc Q lcl|Aclame:pro 262 AIRAL---VE-CGAFTAD-------PELEKDLRARYGLPAPAERD--DGADAAAAKAAGRRRAKRLPGQRQGAALPSRSP 328 (355) Q Consensus 262 ~~~~l---~~-~G~~~~~-------~~~~~~~~e~~glp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355) .++.| .+ +|. .|. ......+.+..|++.|..-= +...+...+..+.......... +..... T Consensus 522 ~i~~l~~~~~~~a~-~P~v~d~~d~~~~~~~~~~~~g~~~p~~~ir~~~~~~~~~~~~~~~~q~~~~~~-----a~~~~~ 595 (641) T protein:vir:94 522 MVTDLLQLLDISGR-VPQIGQSLDYALILEDLLRQMRFTDPMRYIKKAEAPPAAPPIAPAEPGALPPEM-----MNSVGG 595 (641) T ss_pred HHHHHHHHHHHhhc-ChhhhhcCCHHHHHHHHHHHhCCCCchhhccCccCchhHHHHHHHHHHHHHHHH-----HHHHHh Confidence 22222 22 221 111 11234556777887654210 0000000000000000000000 000000 Q ss_pred cccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 329 RADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) .+.+...+.+...+.++-..+-..+.| T Consensus 596 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ 622 (641) T protein:vir:94 596 GLNDQAIAGMTPEDVSDLASRIGIDTS 622 (641) T ss_pred hhHHHHHHHhhHHHHHHHHHhhcCCch Confidence 111112222222222222333222233 No 215 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=94.04 E-value=0.0056 Score=32.94 Aligned_cols=277 Identities=10% Similarity=-0.013 Sum_probs=116.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccc---------------eeeeeecCCCc-----------eEEEeecCCCCCCceeeC Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRT---------------ISRFDVAPDGG-----------LVAIEQWGVFGKATVRIP 54 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~---------------i~~f~~~~~g~-----------l~~~~q~~~~g~~~~~ip 54 (355) =|..||.-.+|.-. |..++|+. +..+..+++|. ...+++.+.......+++ T Consensus 92 sf~~v~~~~d~~~~---i~~~sP~~~~~i~Dp~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (410) T protein:vir:95 92 SFVYISKGEDDEVR---LQVIESSNATGVIDPITGLLVEGYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETG 168 (410) T ss_pred eeEEEecCCCCceE---EEEEcccceEEEEeCCCCceEEEEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCC Confidence 44555543333211 11111111 11111122221 111222111111112223 Q ss_pred CccEEEEecCCCCCccccchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLL-RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEE 133 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll-~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~ 133 (355) .--++.|.++.+-+.|+|.|-+ +.+-...---+..+...+...|=|+.|..+++|-.... ... + . T Consensus 169 ~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~-~~~-----~--------~ 234 (410) T protein:vir:95 169 IPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDPDA-EPM-----E--------K 234 (410) T ss_pred CcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeeccCCCC-CcC-----c--------h Confidence 3335778888888899998743 54544332223334445566777777777777642111 100 0 0 Q ss_pred HHHHHHHHhcCCceeEEccCCce---EEEeccC-CCcccHHHHHHHHHHHHHHHHhhhhhccccCC-ccch-hhhHHHHH Q lcl|Aclame:pro 134 GLQLAKEFRAGEAAGGYIPHGAN---FTLTGVQ-GKLPEMDGPIRYHDEQIARAVLAHFLTLGGDK-STGS-YALGDTFA 207 (355) Q Consensus 134 l~~~~~~~~~G~~~~~v~p~~~~---ie~~~~~-g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~-~~GS-~Al~~vh~ 207 (355) .. ...+....+|++.+ .++-+.. .+...|...++-+-++|+-.---+.-..+..+ +.+| -|+.. .. T Consensus 235 ~~-------~~~~~i~~~~~~~~~~~~~v~q~~~~~l~~~~~~l~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a-~~ 306 (410) T protein:vir:95 235 WK-------ATVSSLLTISSSDKGVKPSVGQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKA-SH 306 (410) T ss_pred hh-------hhhhhheeccCCCCCCcceEEecCCCChHHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHH-HH Confidence 00 01123456665533 4554432 23334555555444554433111100011100 1122 23332 22 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcc-cc--cEEEec---C-CCccHHHHHHHHHHHHhCCCcccchhh Q lcl|Aclame:pro 208 SFFTGSLNAVMKHIADVTQQHVVEDLVDQ--NWGPEE-PA--PRLVPA---Q-LGKEQPVTAEAIRALVECGAFTADPEL 278 (355) Q Consensus 208 ~v~~~~~~ad~~~i~~~ln~~li~~l~~l--Nf~~~~-~~--P~~~~~---~-~~~d~~~~ae~~~~l~~~G~~~~~~~~ 278 (355) +-+....+.-.+.+...+. ++++..+.+ |++... .. .++.+. + ........++++.||.++|-.+. . T Consensus 307 ~~L~~ka~~k~~~fg~~l~-~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~---~ 382 (410) T protein:vir:95 307 ENLRLAGRKAQRSLGAGLL-NVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADANTMTMIGDGVVKLNQALPGYI---N 382 (410) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcccccceeeEEeeecCCcchhhHHHHHHHHHHHHHhccCCc---c Confidence 2233344445566777775 466665444 333211 11 123343 2 22244677899999999853222 2 Q ss_pred HHHHHHHhCCCCCCCccccccccccccCC Q lcl|Aclame:pro 279 EKDLRARYGLPAPAERDDGADAAAAKAAG 307 (355) Q Consensus 279 ~~~~~e~~glp~~~~~~~~~~~~~~~~~~ 307 (355) .+.+++.+|+.+++........ ....++ T Consensus 383 ~~~~~~~lg~~~~~~~~~~~~e-~~~~g~ 410 (410) T protein:vir:95 383 AETIRDLTGIAGDMSAKPVVSE-GGSNGE 410 (410) T ss_pred HHHHHHhcCCChHHHHHHHHHH-HHhCCC Confidence 4678999999643211110000 000001 No 216 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=93.84 E-value=0.0062 Score=32.68 Aligned_cols=312 Identities=13% Similarity=0.136 Sum_probs=120.6 Q ss_pred CeEEEEeeeC---CEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccch-hH Q lcl|Aclame:pro 1 MFEQVYRIEN---GRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQS-LL 76 (355) Q Consensus 1 V~Eivw~~~~---g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~-ll 76 (355) |.+.||.+.+ +.+......+ .++ +|+-..++..+ ++. .|. ...| |++.|+....|..||.| .. T Consensus 210 v~~~V~pr~~~~~~~~~~~~~pf---~s~-~~e~~~~~~~~-l~e---sg~--~e~P---~~~~Rw~~~~ge~YGrg~P~ 276 (559) T protein:vir:95 210 VMHSVYPNIDRDTSKLDSKNKPF---KSV-YYEVGGDNDKL-LRE---SGF--DEFP---IMAPRWEVNGEDVYGSSCPG 276 (559) T ss_pred EEEEEeccccccccccccccceE---EEE-EEEecCCCcee-eec---CCc--ccCC---ccceeeeecCCccccccchH Confidence 4444443222 1222222211 111 22222222222 222 122 2344 58899999999999999 59 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC-- Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG-- 154 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~-- 154 (355) ..+.....--+...+.-+..+++-.-| |+.....+.... .++.-|.-. +++.+ T Consensus 277 ~~al~d~k~L~~l~~~~l~~~~~~~~p-p~~v~~~~~~~~----------------------~~l~pgg~~--~~~~~~~ 331 (559) T protein:vir:95 277 MLALGPVKALQLLQKRKSQLIDKATNP-PMVAPTSLKNQR----------------------ASLLPGDIT--YIDQITG 331 (559) T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcC-ceeccccccccc----------------------eeeecccee--eeCCCCC Confidence 999999888888888889999986544 444322111000 011112211 22221 Q ss_pred -ceEEEec-cCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 -ANFTLTG-VQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGS--LNAVMKHIADVTQQHVV 230 (355) Q Consensus 155 -~~ie~~~-~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~--~~ad~~~i~~~ln~~li 230 (355) ..|+.+. ...........|+.+...|..++...-+.+-+..+++.--+.||+....+.. +-.....+...+-.-|| T Consensus 332 ~~~i~p~~~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~l~~r~~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli 411 (559) T protein:vir:95 332 QDGFRPAYLVNPSTADLVADIQDTRQIINSAYFVDLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDECLNPLI 411 (559) T ss_pred cccceeecccccchHHHHHHHHHHHHHHHHHhhhhhHHHhhcCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH Confidence 2344432 2222222345588899999999988532121111222223455554433321 11111122111111122 Q ss_pred ----HHHHHhC-CCCc--c-cccEEEecCCCcc-----H------HHHHHHHHHHHhCCCcccc----hhhHHHHHHHhC Q lcl|Aclame:pro 231 ----EDLVDQN-WGPE--E-PAPRLVPAQLGKE-----Q------PVTAEAIRALVECGAFTAD----PELEKDLRARYG 287 (355) Q Consensus 231 ----~~l~~lN-f~~~--~-~~P~~~~~~~~~d-----~------~~~ae~~~~l~~~G~~~~~----~~~~~~~~e~~g 287 (355) ..|.+.+ +++. . ..+.+.+..+..- . ..+++.+..|.+++-.+.+ +....++.+.+| T Consensus 412 ~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~La~aqk~~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~G 491 (559) T protein:vir:95 412 DRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVMAQAQKSIGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSG 491 (559) T ss_pred HHHHHHHHhcCCCCCCcccccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhC Confidence 2233322 2211 1 1122333222211 0 1122333333333321111 224667889999 Q ss_pred CCCCC-Cccccccccccc---cCCcccc-ccccccccccCCcccCccccchhHHHHHhHhhhchHHhh Q lcl|Aclame:pro 288 LPAPA-ERDDGADAAAAK---AAGRRRA-KRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRR 350 (355) Q Consensus 288 lp~~~-~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (355) +|..- ..++.+...... +.+..+. ..........-.-+.+..+.+....++...-.-.++-.+ T Consensus 492 vp~~~irs~~ev~~~rqqr~~~qq~~q~~~~~~~aa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 559 (559) T protein:vir:95 492 VSPTVIVPQEQVEQARQQRAQQQQQQQMMAMGMAAAQGVKTLSEAKTSDPSVLSAMANAVSGQGGQSQ 559 (559) T ss_pred CchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCChhHHHHHHHhhcCccccCC Confidence 98421 111111110000 0000000 000000000000001111112333344333323333333 No 217 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=93.66 E-value=0.0068 Score=32.47 Aligned_cols=296 Identities=11% Similarity=0.071 Sum_probs=117.4 Q ss_pred CeEEEEeeeC-CEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIEN-GRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~-g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) |++.||...+ +.| .++ +..+|...... .+..|. ..+| |++.|+....|+.||.|....+ T Consensus 213 v~~~v~~~~~~~~~-------------~~~-~e~~g~~~~~~-~~~~g~--~~~P---~~~~Rw~~~~ge~YGrgp~~~~ 272 (535) T protein:vir:94 213 VYTHIYLDEESGEY-------------LKY-EEIDGVEVEGT-DASYPV--DACP---YIPVRMVRIDGESYGRSYCEEY 272 (535) T ss_pred EEEEEEeeCCCCcE-------------EEE-EEecCeeeccc-cccCcc--ccCC---ceeeeeeecCCCccccchHHHH Confidence 3333332211 111 111 12223221111 011111 1234 5889999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTL 159 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~ 159 (355) +....--+...+.-+...++-.-| |+...+.+... ..++..+..++++-....+|.+ T Consensus 273 l~D~k~L~~l~~~~l~~~~~a~~~-~~lv~p~g~~~----------------------~~~~~~~~~g~~v~g~~~~v~~ 329 (535) T protein:vir:94 273 LGDLRSLENLQEAIVKMSMISAKV-IGLVNPAGITQ----------------------VRRLTKAQTGDFVSGRPEDISF 329 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-Ccccccccccc----------------------hhhcccCCCceeecCCccccee Confidence 999988888888888888875433 33322211100 0112222223333333345555 Q ss_pred ecc--CCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 TGV--QGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGS--LNAVMKHIADVTQQHVVEDLVD 235 (355) Q Consensus 160 ~~~--~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~--~~ad~~~i~~~ln~~li~~l~~ 235 (355) +.. .++...-...|+.+...|..+++...++.. ++...-..||+....+.. +-.-...+...|-.-||.+.+. T Consensus 330 ~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~---d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~ 406 (535) T protein:vir:94 330 LQLEKAADFSVARAVSEQIEGRLSYAFMLNSAVQR---TGERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLK 406 (535) T ss_pred eecccccchhHHHHHHHHHHHHHHHHHhHhhhccC---CCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH Confidence 532 223333467899999999999986655422 122233455544333221 1111111222221222222211 Q ss_pred ----hC-CCCc-ccccEEEec-CCC-----ccHHHHHHHHHHHHhCCCcccch-----hhHHHHHHHhCCCCC--CCccc Q lcl|Aclame:pro 236 ----QN-WGPE-EPAPRLVPA-QLG-----KEQPVTAEAIRALVECGAFTADP-----ELEKDLRARYGLPAP--AERDD 296 (355) Q Consensus 236 ----lN-f~~~-~~~P~~~~~-~~~-----~d~~~~ae~~~~l~~~G~~~~~~-----~~~~~~~e~~glp~~--~~~~~ 296 (355) -+ +++. ...-+..+. ... .+...+...++.+..+|-.+.++ ...+++.+.+|+|.. -..++ T Consensus 407 il~r~g~lP~~p~~~v~~~~vs~la~l~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~e 486 (535) T protein:vir:94 407 QLQATNQIPELPKEAVEPTISTGMEALGRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPE 486 (535) T ss_pred HHHhCCCCCCCChhhccceEeehHHHHHHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHH Confidence 11 1110 000011111 111 12233344455555554222222 235677889999832 11222 Q ss_pred cccccccccCCccc---cccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCC Q lcl|Aclame:pro 297 GADAAAAKAAGRRR---AKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPD 354 (355) Q Consensus 297 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (355) .+...........+ ....-+...++.+ ..++.......... -.+|. T Consensus 487 ev~~~~~q~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~------g~~~~ 535 (535) T protein:vir:94 487 EKQQEMAEAAQGTAMQNAAASAGAGAGTMA------TASPENMKAAAAQA------GMAPN 535 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc------ccChHHHHHHHHHh------ccCCC Confidence 22211111100000 0000011110000 01111110000000 00111 No 218 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=92.93 E-value=0.0094 Score=31.69 Aligned_cols=292 Identities=10% Similarity=0.096 Sum_probs=117.7 Q ss_pred CeEEEEeee-CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIE-NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~-~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) |.+.||-.. ++.| .++. .-+|..+... .+..+ ....| |++.|+....|+.||.|....+ T Consensus 213 v~~~V~~~~~~~~~-------------~~~~-e~~g~~v~~~-~g~~~--f~~~P---~i~~Rw~~~~ge~YGrgp~~~~ 272 (536) T protein:vir:10 213 VYTHIYLDEASGEY-------------LRYE-EVEGMEVQGS-DGTYP--KEACP---YIPIRMVRLDGESYGRSYIEEY 272 (536) T ss_pred EEEEEEEecCCCcE-------------EEEE-eecCcccccc-ccccc--cccCC---ceeeeeeecCCCccccchHHHH Confidence 333333221 1111 1111 2223222111 11111 12334 5889999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc-CCceEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP-HGANFT 158 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p-~~~~ie 158 (355) +....--+...+.-+..+++-.-++++ ..+.+... .. ++..+..++ ++| ..-++. T Consensus 273 l~D~k~L~~l~~~~l~~~~~a~~~~~l-v~p~g~~~------------------~~----~~~~~~~g~-~v~g~~~~v~ 328 (536) T protein:vir:10 273 LGDLRSLENLQEAIVKMSMISSKVIGL-VNPAGITQ------------------PR----RLTKAQTGD-FVTGRPEDIS 328 (536) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-cCcccccc------------------hh----hhccCCCcc-eecCCcccce Confidence 999988888888888888775444333 22222110 11 111122233 343 223444 Q ss_pred Eec--cCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTG--VQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG--SLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 159 ~~~--~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~--~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++. ..++...-...|+.+...|.++++...++.. ++...-..||+....+. .+-.-...+...|-.-||.+++ T Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~l~~~---~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~ 405 (536) T protein:vir:10 329 FLQLEKQADFTVAKAVSDAIEARLSFAFMLNSAVQR---TGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLL 405 (536) T ss_pred eeeccccccchHHHHHHHHHHHHHHHHHhhhhcccC---CCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH Confidence 443 2233333467899999999999987765432 11223335554433322 1111222222222222333332 Q ss_pred HhCCCCc--cccc----EEEec-CCC-----ccHHHHHHHHHHHHhCCCcccc-----hhhHHHHHHHhCC-CC-CCCcc Q lcl|Aclame:pro 235 DQNWGPE--EPAP----RLVPA-QLG-----KEQPVTAEAIRALVECGAFTAD-----PELEKDLRARYGL-PA-PAERD 295 (355) Q Consensus 235 ~lNf~~~--~~~P----~~~~~-~~~-----~d~~~~ae~~~~l~~~G~~~~~-----~~~~~~~~e~~gl-p~-~~~~~ 295 (355) .+-.... .+.| +..+. ... .+...+...++.+..++-...+ +...+++.+.+|+ |. --..+ T Consensus 406 ~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~ 485 (536) T protein:vir:10 406 KQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTE 485 (536) T ss_pred HHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCH Confidence 2221100 0111 11111 111 1223334445555555422112 2235667888898 52 11112 Q ss_pred ccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 296 DGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) +.+....+......+.. ........++.......+-.-..++|- T Consensus 486 eev~~~r~q~~~~~~~~----------------~~a~~~~~~~~~~~~~~~~~~~~~~~~ 529 (536) T protein:vir:10 486 EQKQQKMAQQSMQMGMD----------------NGAAALAQGMAAQATASPEAMAAAADS 529 (536) T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhcCchhHHhhhhc Confidence 22211111110000000 000001111111111111111111211 No 219 >protein:vir:572 Length: 506 # NCBI annotation: unknown # Family: family:all:6660 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046607;genbank:gi:9630180;genbank:GeneID:1261432 Probab=92.84 E-value=0.0016 Score=35.90 Aligned_cols=313 Identities=11% Similarity=0.030 Sum_probs=140.2 Q ss_pred CeEEEE----eeeCCEEEEeeeeecCccceeeeeecCCCce-----EEEeecCC-------CCCCceeeCCccEEEEec- Q lcl|Aclame:pro 1 MFEQVY----RIENGRARLGKLAWRPPRTISRFDVAPDGGL-----VAIEQWGV-------FGKATVRIPVDRLVVFVN- 63 (355) Q Consensus 1 V~Eivw----~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l-----~~~~q~~~-------~g~~~~~ip~~k~i~~~~- 63 (355) +-|+-| .+..|.|+-. ++-.+|..+.-++...+ .+++|..- .......+|-.|.++.|. T Consensus 153 F~~iKYVFP~~R~~G~~V~V----vD~~~F~~~~~~~R~~~~~~LSP~I~~~~Y~~~~~~~~~~R~~~LP~~rT~~~R~~ 228 (506) T protein:vir:57 153 FDEIKYVFPSFRRNGDWVCV----VDMELFTKYKDDQRNELLKSLSPYIKQSDYENFMKDREKYRFKELPQERTFPLRTG 228 (506) T ss_pred hhhhhhhccccccCCceEEE----EehHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhhHHhhhhhhcccccchhheee Confidence 334443 2334444322 22111111111111110 12222110 111234577777666553 Q ss_pred ----CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec-CCCCccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 64 ----EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGA-PLPEAIARDTARAEQWLNDQKEEGLQLA 138 (355) Q Consensus 64 ----~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~-~~~~~~~~d~~~~e~~~~~~~~~l~~~~ 138 (355) +..-|-|||..- ...++-|+..-......+.|-.--|.|++.. ...+..-++-+..+++-+...--+..++ T Consensus 229 TL~RNQ~LG~~~~T~~----L~Dv~HK~KLkD~E~SIA~KII~A~AVL~~~~~~~Ngeyt~~K~~~a~K~Ki~~GVK~AL 304 (506) T protein:vir:57 229 TLKRNQGLGTSWVTPG----LYDVLHKKKLKDVERSIANKIINAVAVLTIGTDKGNGEYTNMKLPKAVKQKIHGGVKTAL 304 (506) T ss_pred eecccccccccccchh----HHHHHHHHHHHHHHHHHHHHHhhhheeeeeecccCCcccccccchHHHHHHHHHHHHHHH Confidence 233456666532 2334455554444555556555556665422 2223333444555555454444444444 Q ss_pred HHHhcCCceeEEccCCceEEEeccCCCcccHHHHHHHHHHHHHHHH-hhhhhccccCCccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 139 KEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LAHFLTLGGDKSTGSYALGDTFASFFTGSLNAV 217 (355) Q Consensus 139 ~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~i-lgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad 217 (355) .--+...-+.+.+|+=.+|+|-+.+.++-+-.. .++.|.-|..+. +.|.|+- |.+|.||.+....++|-..+--- T Consensus 305 EK~~KDGv~~vs~PDFA~~~FP~vK~~~LD~~K-~D~I~~DI~~A~GlS~~L~N---G~~GNYAts~LNLD~FYKrIGV~ 380 (506) T protein:vir:57 305 EKNQKDGVTVVSIPDFADINFPDVKADGLDGAK-FDHINSDIQSAYGLSGSLLN---GDGGNYATSSLNLDTFYKRIGVL 380 (506) T ss_pred hcccccCeEEEecccccccccccccccCCCchh-hcccchhhhhhhccchheec---CCCcceeeeechHHHHHHHHHHH Confidence 333333456788999999999888765544322 245666666654 2355653 35689999999999999888888 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcc-cccEEEecCCCc-cHHHHHHHHHHHHhCCCcccchhhHHHHHH-HhCCCCCCCc Q lcl|Aclame:pro 218 MKHIADVTQQHVVEDLVDQNWGPEE-PAPRLVPAQLGK-EQPVTAEAIRALVECGAFTADPELEKDLRA-RYGLPAPAER 294 (355) Q Consensus 218 ~~~i~~~ln~~li~~l~~lNf~~~~-~~P~~~~~~~~~-d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e-~~glp~~~~~ 294 (355) +..|+..+-.+|+..++ |... .--.|.++...+ ..++..+.+-+|-+.|+-. .|+.+ ..|+....=- T Consensus 381 ~E~IEqEvY~~L~~lvL----~~~~~~NY~~~Y~KD~Pl~~~~K~D~LIKL~~~G~S~------K~V~Dnl~GvS~E~Y~ 450 (506) T protein:vir:57 381 MEDIEQEVYQKLFNLVL----PAAQKDNYYMNYDKDKPLTLKEKMDILIKLNDKGWSI------KHVVDNLAGVSWESYL 450 (506) T ss_pred HHHHHHHHHHHHHHhhc----ccccCCceeEeeCCCCccchhhhhchheeecccCccH------HHHHHhhhccchHHHH Confidence 88887444445766543 3221 111466665545 3455566666666666632 22222 2233211100 Q ss_pred -------------ccccccccc-ccCCccccccccccccccC-CcccCccccchhHHHHHhHhhh Q lcl|Aclame:pro 295 -------------DDGADAAAA-KAAGRRRAKRLPGQRQGAA-LPSRSPRADPPRRRGPLRRRPR 344 (355) Q Consensus 295 -------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 344 (355) |...++... ...++.-..+.+++..... ..+.+....+ -|+ T Consensus 451 E~tlYE~E~LKL~EKI~P~~~s~~~tGN~vG~P~~~~~~~D~Tv~Satsngnd---------npi 506 (506) T protein:vir:57 451 EQTLYETEELKLQEKIRPYQTSYTFTGNEVGRPNEGNKNNDNTVKSATSNGND---------NPI 506 (506) T ss_pred HHHHHHHHHhhHHhhcCcccccceecccccCCCCCCCCcccchhhhcccCCCC---------CCC Confidence 001111100 0111111111111111100 0000000000 011 No 220 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=92.56 E-value=0.011 Score=31.34 Aligned_cols=288 Identities=13% Similarity=0.044 Sum_probs=105.3 Q ss_pred CeEEEEeeeCCEEEEe-----e-----------------------------eeec---C-cccee--eeeecCC---Cce Q lcl|Aclame:pro 1 MFEQVYRIENGRARLG-----K-----------------------------LAWR---P-PRTIS--RFDVAPD---GGL 37 (355) Q Consensus 1 V~Eivw~~~~g~~~~~-----~-----------------------------l~~r---~-~~~i~--~f~~~~~---g~l 37 (355) +.+.+|--.+|.+.+. . +.++ + ..+|. .|+.... |.. T Consensus 132 ~~~~~~~D~~~~~~i~~v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~ 211 (496) T protein:vir:38 132 FVIKVYHDGNKNVKVSFATADCMYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTK 211 (496) T ss_pred EEEEEEEcCCCcEEEEEEcccceEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCcc Confidence 2233321111110000 0 0000 0 00010 0111000 100 Q ss_pred EEEeecC-----CCCCCceeeCCccEEEEe----cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEe Q lcl|Aclame:pro 38 VAIEQWG-----VFGKATVRIPVDRLVVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQ 108 (355) Q Consensus 38 ~~~~q~~-----~~g~~~~~ip~~k~i~~~----~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~ 108 (355) +.+..-. .....++.-|+ |++++ +.....+|+|.|.|..+-...-.-...+..|+.-++. |.+.+. T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~---~~~~i~ 286 (496) T protein:vir:38 212 VSLTLLFDDIEPVVPLPDFTRPT--FIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL---GKKKVL 286 (496) T ss_pred ccccccccccccceeecCCCcce--EEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhh---ccccee Confidence 0000000 00000111111 22222 2345678999999998877655555555555555552 222222 Q ss_pred ecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCc---------eeEEcc-----CCceEEEeccCCCcccHHHHHH Q lcl|Aclame:pro 109 GAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA---------AGGYIP-----HGANFTLTGVQGKLPEMDGPIR 174 (355) Q Consensus 109 ~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~---------~~~v~p-----~~~~ie~~~~~g~~~~~~~~i~ 174 (355) .+.. +.....+. .|.. .+.++. .+..|+.+...-....|...++ T Consensus 287 v~~~---------------------~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~ 344 (496) T protein:vir:38 287 VPSS---------------------FVKTAVNL-DGSTTQYFDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESIN 344 (496) T ss_pred cchH---------------------HhhccCCC-CCccccCCCCccceEEEeecCCCcccccceeeccccCHHHHHHHHH Confidence 2100 00000000 0100 000000 0112333322222234555566 Q ss_pred HHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-------CCC-Ccccc Q lcl|Aclame:pro 175 YHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG--SLNAVMKHIADVTQQHVVEDLVDQ-------NWG-PEEPA 244 (355) Q Consensus 175 ~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~--~~~ad~~~i~~~ln~~li~~l~~l-------Nf~-~~~~~ 244 (355) .+-++|+..+.-+.-+.+.. ++|...+.++..+.... .+..-.+.+...|. +++..++.+ +.. ....- T Consensus 345 ~~l~~i~~~~g~~~~~f~~~-~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~-~l~~~il~~~~~~~~~~g~~~~~~~ 422 (496) T protein:vir:38 345 AMLRIYAMQVGLSAGTFTFD-ENGLKTATEVVSEKSETYQTKNSHSQLIEQGIK-EMIVSILEVGKFIEAYSGEVVELDT 422 (496) T ss_pred HHHHHHHHhhCCChhhcCCC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCccc Confidence 66566665542222122222 22322233443333222 23444555666664 465555432 211 12223 Q ss_pred cEEEecCCC-ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCC Q lcl|Aclame:pro 245 PRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAAL 323 (355) Q Consensus 245 P~~~~~~~~-~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (355) +.+.|...- .+..+.++.+.+++.+|++. .+.++...+|+++++-.++ +........... +..+.....++. T Consensus 423 i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS----~et~l~~~~~~~d~ea~~e-l~ri~~E~~~~~--~~~d~~~~~~~~ 495 (496) T protein:vir:38 423 ITVDFDDSIAQDEDTTINRYTNAKNQGMIP----LKIALQRAWNITEAEADEW-AEMLAKEKQAEM--PNNDMNGIFGEE 495 (496) T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCC----HHHHHHhcCCCChHHHHHH-HHHHHHhhhccC--ccccccCCCCCC Confidence 577887544 46678888999999999754 2567777778864322111 111111000000 000001111110 Q ss_pred ccc Q lcl|Aclame:pro 324 PSR 326 (355) Q Consensus 324 ~~~ 326 (355) . T Consensus 496 --e 496 (496) T protein:vir:38 496 --E 496 (496) T ss_pred --C Confidence 0 No 221 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=92.54 E-value=0.011 Score=31.32 Aligned_cols=290 Identities=7% Similarity=-0.000 Sum_probs=110.9 Q ss_pred CeEEEEe------------------------e--eCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeC Q lcl|Aclame:pro 1 MFEQVYR------------------------I--ENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIP 54 (355) Q Consensus 1 V~Eivw~------------------------~--~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip 54 (355) |-+++++ . ++..-....+.++|-. +..++...++.... + .+ +.....+| T Consensus 173 v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~-~~~~~~~~d~~~~~-~-es--~~~~~e~P 247 (516) T protein:vir:96 173 LLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYTHAKYLGDG-FWELKQSADDIPVG-K-VS--KIKSEKLP 247 (516) T ss_pred eeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEeeeeeCCc-eeEEEEEeCceeec-c-cc--ccccccCC Confidence 1111110 0 0000000011111111 11112222332221 1 11 11122344 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEG 134 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l 134 (355) |++.|+...+|+.||.|...-+.....--+...+.-+.++++-. -.|+...+.+... T Consensus 248 ---~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~-~~~~lv~p~g~~~------------------- 304 (516) T protein:vir:96 248 ---FIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMA-DIKYLIRPGAQTD------------------- 304 (516) T ss_pred ---eeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhc-CCccccCcccccc------------------- Confidence 59999999999999999999999999888888888888888743 3343322211110 Q ss_pred HHHHHHHhcCCceeEEccCC-ceEEEeccCCCccc---HHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHH Q lcl|Aclame:pro 135 LQLAKEFRAGEAAGGYIPHG-ANFTLTGVQGKLPE---MDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFF 210 (355) Q Consensus 135 ~~~~~~~~~G~~~~~v~p~~-~~ie~~~~~g~~~~---~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~ 210 (355) ..++..|..+++ +|.. ..+..+.. ++..+ -...|+.+...|..+++...+... ++...-+.||+.... T Consensus 305 ---~~~l~~~~~g~i-~~g~~~~v~~~q~-~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~r---~~~rvTAtEV~~r~~ 376 (516) T protein:vir:96 305 ---VDHFVNSGTGEV-VTGVEEDIHIVQL-GKYADLTPISAVLEVYTRRIGVVFMMETMTRR---DAERVTAVEIQRDAL 376 (516) T ss_pred ---hhhhccCCCcee-ecCCcccceeeec-CcccchhHHHHHHHHHHHHHHHHHhhhhhccC---CCccccHHHHHHHHH Confidence 112222333333 4432 34555442 23333 457899999999999997766542 122233455543332 Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecC--CCc--------cHHHHHHHHHHHHh-CCCcc--c Q lcl|Aclame:pro 211 TG---SLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQ--LGK--------EQPVTAEAIRALVE-CGAFT--A 274 (355) Q Consensus 211 ~~---~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~--~~~--------d~~~~ae~~~~l~~-~G~~~--~ 274 (355) +. +---.-++-.+.+ .-||.+++ +- .....|...... +.. +.......++.+.. +++.+ . T Consensus 377 E~~~~LGpv~~rl~~Ell-~Pli~r~l--~~-~~p~lp~~~v~~~~vs~l~~l~r~~~~~~i~~~~~~i~~~~~~~p~v~ 452 (516) T protein:vir:96 377 EIEQNMGGVYSLFATTMQ-SPVAMWGL--LE-AGESFTSDLVDPVIITGIEALGRMAELDKLANFAQYMSLPLQWPEPVL 452 (516) T ss_pred HHHHHhhhHHHHHHHHHH-HHHHHHHH--Hh-cCCCCccccccceeechHHHHHHHHHHHHHHHHHHHHHHHhcCChhHH Confidence 22 2211212222222 22332221 11 112233322111 110 11111111111111 11111 0 Q ss_pred c----hhhHHHHHHHhCCCCCC-CccccccccccccCC-ccc--cccccccccccCCcccCccc Q lcl|Aclame:pro 275 D----PELEKDLRARYGLPAPA-ERDDGADAAAAKAAG-RRR--AKRLPGQRQGAALPSRSPRA 330 (355) Q Consensus 275 ~----~~~~~~~~e~~glp~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~ 330 (355) + +...+++.+.+|+|..- ..++.+......... ..+ ....-+.+..+.......++ T Consensus 453 d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q~~~~~a~~~~~~~~~~~~~~~~~~ 516 (516) T protein:vir:96 453 AAVKWPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQQAQMLEEGVAKAVPGVIQQELKEA 516 (516) T ss_pred hcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccccC Confidence 1 12356778888998522 111111111100000 000 00000000000000000000 No 222 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=92.34 E-value=0.012 Score=31.16 Aligned_cols=304 Identities=9% Similarity=0.036 Sum_probs=119.0 Q ss_pred CeEEEEeeeCC------------------------EEEEeeeeecCcc-ceeeeeecCCCceEEEeecCCCCCCceeeCC Q lcl|Aclame:pro 1 MFEQVYRIENG------------------------RARLGKLAWRPPR-TISRFDVAPDGGLVAIEQWGVFGKATVRIPV 55 (355) Q Consensus 1 V~Eivw~~~~g------------------------~~~~~~l~~r~~~-~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~ 55 (355) |.+|+.+..=+ ......+.+++-. .+.++. ..+|.....+. + +.....+| T Consensus 180 v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~-~~~g~~~~~~~-~--~~~~~e~P- 254 (532) T protein:vir:99 180 VLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHVYRDPEAMVFRSYQ-EIDGEIVAGTE-G--EYPLDSCP- 254 (532) T ss_pred eeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEEEecCCCCeeEEEE-eecCceecccc-c--ccccccCC- Confidence 44444321100 0000111111110 011221 12233222111 1 11112234 Q ss_pred ccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 56 DRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGL 135 (355) Q Consensus 56 ~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~ 135 (355) |++.|+...+|+.||.|....++....--+...+.-+.++++-.-| |+...+.+... . T Consensus 255 --~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~-~~lv~p~g~~~------------------~- 312 (532) T protein:vir:99 255 --WIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYEAIVKMSMISSKV-LFFVNPNGVTQ------------------I- 312 (532) T ss_pred --ceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Cceeccccccc------------------h- Confidence 5899999999999999999999999988888888888888876443 43332222110 1 Q ss_pred HHHHHHhcCCceeEEccCCceEEEecc--CCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH- Q lcl|Aclame:pro 136 QLAKEFRAGEAAGGYIPHGANFTLTGV--QGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG- 212 (355) Q Consensus 136 ~~~~~~~~G~~~~~v~p~~~~ie~~~~--~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~- 212 (355) .++..|..++++-....++..+.. .++...-...|+.+...|.++++...++.. +++..-..||+....+. T Consensus 313 ---~~~~~~~~g~~v~g~~~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~---d~~r~TAtEV~~r~~E~~ 386 (532) T protein:vir:99 313 ---RRVAKANTGDFVAGRKQDVEVFQLEKYNDFQVAKATADDIEKRLSYAFMLNSAVQR---GGDRVTAEEIRYVAGELE 386 (532) T ss_pred ---hhhccCCCcceecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcccC---CCCcccHHHHHHHHHHHH Confidence 112112233333222334555532 223333477899999999999988765432 12223334544433222 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH----hC-CCC--ccc-ccEEEecCCC-----ccHHHHHHHHHHHHhCCCcccc--- Q lcl|Aclame:pro 213 -SLNAVMKHIADVTQQHVVEDLVD----QN-WGP--EEP-APRLVPAQLG-----KEQPVTAEAIRALVECGAFTAD--- 275 (355) Q Consensus 213 -~~~ad~~~i~~~ln~~li~~l~~----lN-f~~--~~~-~P~~~~~~~~-----~d~~~~ae~~~~l~~~G~~~~~--- 275 (355) .+-.-...+...|-.-||.+.+. -+ +++ +.. -|.++ ..+. .+...+...++.|.+.--...+ T Consensus 387 ~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv-~~is~Laraq~~~~l~~~~~~laq~~p~~~d~id 465 (532) T protein:vir:99 387 DTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIA-TGLEALGRGHDLNKLNVFIDYMIKLAGLQDDDIN 465 (532) T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhccccee-ecchHHHHHHHHHHHHHHHHHHHhhcchhhhhCC Confidence 11111112222222223222211 11 111 100 11121 1111 1222233344444332111111 Q ss_pred -hhhHHHHHHHhCCCCCC--CccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhc Q lcl|Aclame:pro 276 -PELEKDLRARYGLPAPA--ERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCA 352 (355) Q Consensus 276 -~~~~~~~~e~~glp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (355) +...+++.+.+|+|.+. ..++.+............ ....-....+............+.+ T Consensus 466 ~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~ 528 (532) T protein:vir:99 466 LLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAG-----------------MVTAGQQMGAAGGQAAAAMMQQQAG 528 (532) T ss_pred HHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhcchhHHhhcC Confidence 12356677888985321 111111111100000000 0000000000001111122233333 Q ss_pred CCC Q lcl|Aclame:pro 353 PDG 355 (355) Q Consensus 353 ~~~ 355 (355) +|- T Consensus 529 ~~~ 531 (532) T protein:vir:99 529 MPT 531 (532) T ss_pred CCC Confidence 333 No 223 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=92.17 E-value=0.013 Score=31.01 Aligned_cols=291 Identities=8% Similarity=0.040 Sum_probs=119.6 Q ss_pred CeEEEEeeeCCE--------EEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCcccc Q lcl|Aclame:pro 1 MFEQVYRIENGR--------ARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLG 72 (355) Q Consensus 1 V~Eivw~~~~g~--------~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G 72 (355) |...||...++. +..+...+. ++|. ..+|....+.. .|. ...| |++.|+....|+.|| T Consensus 214 v~~~v~~~~~~~~~~~~~~~~~~~~~p~~-----s~~~-e~~~~~~~l~e---sg~--~e~P---~~~~Rw~~~~ge~YG 279 (547) T protein:vir:10 214 VVMCVFTRYDKKQNRNAGTVLAPTERPFG-----KKWI-LKEGAVQLGEE---GGY--YEMP---AYAIRWRKSAGSQWG 279 (547) T ss_pred EEEEEeeccCCCCCccccceeecccccee-----EEEE-EecCceeeeec---CCc--ccCC---eeeeeeeecCCcccc Confidence 455566443321 112222111 1222 23333222222 122 2344 589999999999999 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc Q lcl|Aclame:pro 73 QSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP 152 (355) Q Consensus 73 ~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p 152 (355) .|....++....--+...+.-+..+++-.-| |+...+.+... .+ ++ +..+.++.. T Consensus 280 rgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p-p~~v~~~g~~~-----------------~~-----~~--~pgg~~~~~ 334 (547) T protein:vir:10 280 FGPSHLALPDVLTANRYVELVLRSSEKVIDP-AIMVTERGLIS-----------------DI-----DL--GASGLTVVR 334 (547) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ceecccccccc-----------------cc-----ee--cCCeeeecC Confidence 9999999999988888888889999986443 44322221110 00 11 222333333 Q ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGS--LNAVMKHIADVTQQHVV 230 (355) Q Consensus 153 ~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~--~~ad~~~i~~~ln~~li 230 (355) ....++-++..++...-...|+.+...|..+++...+... ++...-+.||+....+.. +-.....+...|-.-|| T Consensus 335 ~~~~v~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~~---~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli 411 (547) T protein:vir:10 335 DMESMKPFESRARFDVSSIQLTDLRSAVRRIYYVDQLQMK---DSPAMTATEVQVRYELMQRLLGPTLGRLENDFLSPMI 411 (547) T ss_pred CcccceeeecccchHHHHHHHHHHHHHHHHHhhhhhhhcC---CCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH Confidence 3445555554443334467899999999999998765442 223344455554433321 11111112211212222 Q ss_pred ----HHHHHhC-CCCc--cc----ccEEEecCCCc--------cHHHHHHHHH---HHHhCCCc----ccchhhHHHHHH Q lcl|Aclame:pro 231 ----EDLVDQN-WGPE--EP----APRLVPAQLGK--------EQPVTAEAIR---ALVECGAF----TADPELEKDLRA 284 (355) Q Consensus 231 ----~~l~~lN-f~~~--~~----~P~~~~~~~~~--------d~~~~ae~~~---~l~~~G~~----~~~~~~~~~~~e 284 (355) ..|.+.| +++. .. .-.+.+..+.. +.......++ .|.+++-. +-.+....++.+ T Consensus 412 ~r~~~il~r~g~lP~~p~~l~~~~~~~~~v~~is~Laraq~~~~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~ 491 (547) T protein:vir:10 412 QRTFNIRFRAGKLGELPSKLLESGKAAMDIVYTGPLSRAQKIDQAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGS 491 (547) T ss_pred HHHHHHHHhcCCCCCCchhhhccCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHH Confidence 2222222 1111 00 01122222221 0011111112 22222211 111234667889 Q ss_pred HhCCCCCCC-ccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 285 RYGLPAPAE-RDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 285 ~~glp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) .+|+|..-= .++.+....+......+... .+.+....-..+..+..++- T Consensus 492 ~~Gvp~~~irs~eev~~~r~qr~~~~q~~~----------------------qaa~~~~~g~~m~~~~~~~a 541 (547) T protein:vir:10 492 LLGAPQTLMRPKAKVTSIRKNRSQTQQKAE----------------------QAAIAEAEGNAMEAQGKGQA 541 (547) T ss_pred HhCCChhccCCHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHhhcCccc Confidence 999984211 11111111111000000000 00000000000000000000 No 224 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=92.14 E-value=0.013 Score=30.99 Aligned_cols=276 Identities=11% Similarity=-0.017 Sum_probs=102.9 Q ss_pred CeEEEEeeeCCE----EEEeeeeecCc-cceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchh Q lcl|Aclame:pro 1 MFEQVYRIENGR----ARLGKLAWRPP-RTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSL 75 (355) Q Consensus 1 V~Eivw~~~~g~----~~~~~l~~r~~-~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~l 75 (355) +.|.+-..+++. ....-+...+- .++.++.-+..+.-...+ ..++...-.|| |+++. ....+--.+.+. T Consensus 199 lrE~~~~~D~~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~e~~~~--~~g~~~l~~IP---~v~~~-~~~~~~~~~~pP 272 (488) T protein:vir:96 199 LLEDYQERDGGTYVSKQRLINHRLVDGLCEFQEVTDDEYSDEWTPV--LINSKQSDTIP---FFLAS-SQSNEWCIDSTP 272 (488) T ss_pred EEEEEEeccCCCcccceEEEEEEEECcEEEEEEEecCCcccceEee--cCCCcccCeeE---EEEEe-cCCCCCCCCCCc Confidence 222221222221 11111111110 011111111111101111 11111111234 23332 222333345444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-ecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC Q lcl|Aclame:pro 76 LRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQ-GAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG 154 (355) Q Consensus 76 l~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~-~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~ 154 (355) |..++..-+---....+.-..+. ..+.|+.. +..+.. ...+ .. ... -.+..|+......|.| T Consensus 273 LldLA~lnl~Hy~~ssd~~~il~--~~~~p~lv~~~~~~~-~~~~-~~-----------~~~--~g~~~~~~~~~~~~~g 335 (488) T protein:vir:96 273 LTSLAEISLSIYVMNAYSNKAMI--LANEAKWMVDMGDMN-KTMA-SE-----------MNP--LGFTLAGRMPYYVKNG 335 (488) T ss_pred hHHHHHHHHHHHhhhhHHHHHHH--hcCCceeeeccCCCC-cccc-cc-----------ccc--ceeeecccccccccCC Confidence 44443332111111222222222 22334332 222211 1100 00 000 0122244444444555 Q ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 155 ~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++++++++++.- .++.++....+|. .+.+..++. +.+.+++-+ .........++.+-+..+++.+++ ++.++. T Consensus 336 -~~~~~e~~~~~l-~~~~l~~l~~qm~-~~Ga~l~~~-~~~~Ta~~~--~~~~~~~~S~L~~~a~~le~al~~-~l~~~A 408 (488) T protein:vir:96 336 -DVKVIQAQFSPE-TENKVEKLFEQAV-KVGASLFTQ-QSNETATGA--AIRSGSSTASMATLGNNVEDTVRN-MLRFIM 408 (488) T ss_pred -ceeecCCchhHH-HHHHHHHHHHHHH-HHhHhhccC-CCcchHHHH--HHHHHHhhHHHHHHHHHHHHHHHH-HHHHHH Confidence 688888776533 3555666666652 233344433 222333322 233344466778888999999974 888888 Q ss_pred HhCCCC----cccccEEEecCC---CccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCCCCC-ccccccccccccC Q lcl|Aclame:pro 235 DQNWGP----EEPAPRLVPAQL---GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAE-RDDGADAAAAKAA 306 (355) Q Consensus 235 ~lNf~~----~~~~P~~~~~~~---~~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~~~~-~~~~~~~~~~~~~ 306 (355) ++-... ...-+.|.+... ..-+....+.+.++...|.+.. ....+++ ++.|+=.|.- .++...... ..+ T Consensus 409 ~w~g~~~~~~~~~~~~~~in~dF~~~~ld~~~~~al~~~~~~G~Is~-~t~~~~L-~~~gvl~~d~~~e~~~~~ie-~~g 485 (488) T protein:vir:96 409 RYFEGTNLYVNPDELVFKLNRDYFDVEVNPQMLQVAYAAMMEGNLPQ-VSWFELL-KRARVVRGDMSKEEFDEHIA-ELG 485 (488) T ss_pred HHcCCCCCCcCccceEEEeccCCCCccCCHHHHHHHHHHHhcCCCCH-HHHHHHH-HhCCcCCccCCHHHHHHHHh-hcC Confidence 765321 112346665421 1223445667777778887542 2122333 3345522221 111111110 111 Q ss_pred Ccc Q lcl|Aclame:pro 307 GRR 309 (355) Q Consensus 307 ~~~ 309 (355) .+. T Consensus 486 ~~~ 488 (488) T protein:vir:96 486 FGM 488 (488) T ss_pred CCC Confidence 111 No 225 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=91.44 E-value=0.016 Score=30.45 Aligned_cols=302 Identities=7% Similarity=-0.008 Sum_probs=113.1 Q ss_pred CeEEE-----EeeeC-CEEEEeeeeecCc---------ccee--eeeecCC---CceEEEeecCCCCCCceeeC---Ccc Q lcl|Aclame:pro 1 MFEQV-----YRIEN-GRARLGKLAWRPP---------RTIS--RFDVAPD---GGLVAIEQWGVFGKATVRIP---VDR 57 (355) Q Consensus 1 V~Eiv-----w~~~~-g~~~~~~l~~r~~---------~~i~--~f~~~~~---g~l~~~~q~~~~g~~~~~ip---~~k 57 (355) |.|.+ +...+ +...-..|.+.-+ .+|. .|+-... |+.+.+..-...-.+.+.++ .-- T Consensus 173 v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l~~~~~~~g~~~Pl 252 (517) T protein:vir:98 173 ISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPL 252 (517) T ss_pred eEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccccccCCCcceeECCCCcce Confidence 22222 22111 1111111221110 0111 1111111 11111110000000001111 111 Q ss_pred EEEEe----cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 58 LVVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEE 133 (355) Q Consensus 58 ~i~~~----~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~ 133 (355) |.+++ ++....+|+|.|.+..+......-...+..|..-++. | ..++.. +...-....+......- ...+ T Consensus 253 f~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~-g-~~~i~v-p~~~l~~~~~~~g~~~~--~~~d- 326 (517) T protein:vir:98 253 FNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKM-G-QRTVFV-SDVMLRTVPDESGMPPP--QVFD- 326 (517) T ss_pred EEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHh-C-Ccceec-ChhhhccccCCCCcccC--CCCC- Confidence 22332 2233478999999999998877777666666665553 1 233322 11000000000000000 0000 Q ss_pred HHHHHHHHhcCCceeEEcc---CCceEEEeccCCCcccHHHHHHHHHHHHHHHH-hh-hhhccccCCccchhhhHHHHHH Q lcl|Aclame:pro 134 GLQLAKEFRAGEAAGGYIP---HGANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LA-HFLTLGGDKSTGSYALGDTFAS 208 (355) Q Consensus 134 l~~~~~~~~~G~~~~~v~p---~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~i-lg-qtlt~~~~~~~GS~Al~~vh~~ 208 (355) .....+..+. .+.-|+.....--...|.+.++.+=++|...+ ++ ++++.+ +.|...+.++-.+ T Consensus 327 ---------~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~---~~~~kTATEi~s~ 394 (517) T protein:vir:98 327 ---------PDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFD---GRSMKTATEIVSE 394 (517) T ss_pred ---------cccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCccccccc---ccccccHHHHHHH Confidence 0000000000 00011111111112335555666656555443 33 344332 2233323344332 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-CCCc---ccccEEEecCC-CccHHHHHHHHHHHHhCCCcccchh Q lcl|Aclame:pro 209 --FFTGSLNAVMKHIADVTQQHVVEDLVDQ----N-WGPE---EPAPRLVPAQL-GKEQPVTAEAIRALVECGAFTADPE 277 (355) Q Consensus 209 --v~~~~~~ad~~~i~~~ln~~li~~l~~l----N-f~~~---~~~P~~~~~~~-~~d~~~~ae~~~~l~~~G~~~~~~~ 277 (355) -....+.+-.+.+...|. +|+..++.+ + ++.. ...+.+.|+.. -+|.++.++.+.+++.+|+.. T Consensus 395 ~~~~~~t~~~~~~~~~~aL~-~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms---- 469 (517) T protein:vir:98 395 NDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIP---- 469 (517) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCC---- Confidence 223345566677777774 477665432 1 2221 22356788764 457788889999999999855 Q ss_pred hHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCcccCccccchh Q lcl|Aclame:pro 278 LEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPR 334 (355) Q Consensus 278 ~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (355) .+.++.+.||+.+.+-.++...-..... . ..+.+... .. ..+.+.+.+ T Consensus 470 ~~~~i~~~~g~~eeeA~~e~~~i~~E~~-~---~~~~~~~~--~~---~~~~~gd~e 517 (517) T protein:vir:98 470 TVEAIQRIFKVPKKTAEQWLEEIRKDQI-E---LDPVTISQ--RA---QKRMFGDEE 517 (517) T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhcc-c---cCCCCccc--cc---cCCCCCCCC Confidence 3678999999864322211111111111 0 00000000 00 000000111 No 226 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=91.43 E-value=0.016 Score=30.45 Aligned_cols=298 Identities=10% Similarity=0.058 Sum_probs=121.4 Q ss_pred CeEEEEeeeCC-EEEEeeeeecCccceeeeeecCCCceEEEeecCCCCC-CceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENG-RARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGK-ATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g-~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~-~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) |.+.||.+.++ .|. ++. .-+|..+ . +..+. ....+| |++.|+....|+.||.|.... T Consensus 215 v~~~V~pr~~~~~~~-------------~~~-~~~~~~v--~--~~~~~~~~~e~P---~i~~Rw~~~~ge~YGrgp~~~ 273 (543) T protein:vir:88 215 VYTHIYIDDESGDFL-------------SYQ-EIEGVEV--D--GSDGQYPQDALP---WIAVRWTKRDGEHYGRSHVEE 273 (543) T ss_pred EEEEEEeecCCCccc-------------ccc-cccCeee--e--cCCCccccccCC---ceeeeeeecCCCccccchHHH Confidence 44444433221 110 000 0112111 1 11111 112234 589999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFT 158 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie 158 (355) ++....--+...+.-+.++++-.-| |+...+.+... . .++.-|...+++-....++. T Consensus 274 ~l~D~k~L~~l~~~~l~~~~~~~~p-p~~v~~~g~~~------------------~----~~~~~~~~g~~v~g~~~~v~ 330 (543) T protein:vir:88 274 YLGDLNSLESLNEAMIKFAMISSKV-VGLVNPNGITQ------------------V----RRLVKAQTGDFVAGRKADIE 330 (543) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-ceeeccccccc------------------h----hhcccCCCceeecCCCCcce Confidence 9999999888888899999986554 44332222110 1 12222333334333345566 Q ss_pred Eecc--CCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTGV--QGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG--SLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 159 ~~~~--~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~--~~~ad~~~i~~~ln~~li~~l~ 234 (355) .+.. .++...-...|+.+...|..+++...++.. +++..-..||+....+. .+-.-...+...|-.-||.+.+ T Consensus 331 ~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~---~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~ 407 (543) T protein:vir:88 331 FLQLEKTADFTVAKSVADAIEARLSYVFMLNSAVQR---SGERVTAEEIRYVASELEDTLGGVYSILSQELQLPIVRVLL 407 (543) T ss_pred eeecccccchhHHHHHHHHHHHHHHHHHhhhhhccC---CCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH Confidence 5542 344445678899999999999988766432 12223335554433222 1112122222222222332222 Q ss_pred Hh--CCCCccccc----EEEec-CCCc-----cHHHHHHHHHHHHhCCCc-ccc----hhhHHHHHHHhCCCCC-C-Ccc Q lcl|Aclame:pro 235 DQ--NWGPEEPAP----RLVPA-QLGK-----EQPVTAEAIRALVECGAF-TAD----PELEKDLRARYGLPAP-A-ERD 295 (355) Q Consensus 235 ~l--Nf~~~~~~P----~~~~~-~~~~-----d~~~~ae~~~~l~~~G~~-~~~----~~~~~~~~e~~glp~~-~-~~~ 295 (355) .+ ..+.-.+.| +..+. .... +...+...++.+..++-. +.+ +...+++.+.+|+|.. - ..+ T Consensus 408 ~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~v~~~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~ 487 (543) T protein:vir:88 408 NQLQATQQIPNLPQEAVEPTVTTGAEALGRGQDLDKLTQFLNAVATVSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTE 487 (543) T ss_pred HHHHhcCCCCCCchhceeeeEEecHHHHHHHHHHHHHHHHHHHHHhccchhhhccCCHHHHHHHHHHHhCCChhhhcCCH Confidence 11 111101111 12221 1111 112222222322222210 111 2235667788899532 1 222 Q ss_pred ccccccccccC---CccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 296 DGADAAAAKAA---GRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 296 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) +.+....+... ....+....+.+...+. ........+++. .+.-+..|-| T Consensus 488 ~e~~~~~~q~~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~p~~ 540 (543) T protein:vir:88 488 AEKAQAQSQEMLKQGGLNAAAGIGSGVAAQA-----TASPEAMESAMD-----TAGVQPGPIA 540 (543) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhh-----ccChHHHHHHhh-----hcCCCCCCCC Confidence 22221111110 00000111111111010 000011111111 1112334444 No 227 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=91.22 E-value=0.017 Score=30.30 Aligned_cols=294 Identities=13% Similarity=0.037 Sum_probs=110.2 Q ss_pred CeEEEEeeeCCEEEEe--------------eeeec---C----cccee--eeeecC---CCceEEEeecCCCCC-----C Q lcl|Aclame:pro 1 MFEQVYRIENGRARLG--------------KLAWR---P----PRTIS--RFDVAP---DGGLVAIEQWGVFGK-----A 49 (355) Q Consensus 1 V~Eivw~~~~g~~~~~--------------~l~~r---~----~~~i~--~f~~~~---~g~l~~~~q~~~~g~-----~ 49 (355) |+-+.|. .|.+... .|.+. . ..+|. .|+-+. -|+.+.+..-..... . T Consensus 154 ~~Pi~~d--~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~ 231 (499) T protein:vir:80 154 MYPLSND--SENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLP 231 (499) T ss_pred eEEEEec--CCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCceeec Confidence 2222221 1111100 01100 0 00010 010000 011111000000000 0 Q ss_pred ceeeCCccEEEEec----CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHH Q lcl|Aclame:pro 50 TVRIPVDRLVVFVN----EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQ 125 (355) Q Consensus 50 ~~~ip~~k~i~~~~----~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~ 125 (355) ++.-|+ |++++. ....++|+|.|.+..+-...---...+..|+.-+|. + ..++.. +...-....+... + T Consensus 232 ~~~~p~--f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~-~-~~~i~v-~~~~l~~~~~~~g-~- 304 (499) T protein:vir:80 232 SLTRPT--FIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL-G-KKKVLV-PSSFVKTAVNLDG-S- 304 (499) T ss_pred CCCccc--eEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHh-c-ccceec-chhhhhccCCCCC-C- Confidence 111121 444443 234678999999999987766666666666666663 1 222322 1000000000000 0 Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEEcc---C--CceEEEeccCCCcccHHHHHHHHHHHHHHHH-hhhhhccccCCccch Q lcl|Aclame:pro 126 WLNDQKEEGLQLAKEFRAGEAAGGYIP---H--GANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LAHFLTLGGDKSTGS 199 (355) Q Consensus 126 ~~~~~~~~l~~~~~~~~~G~~~~~v~p---~--~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~i-lgqtlt~~~~~~~GS 199 (355) .+. -+......+..++ . +..|+.+...-....|...++.+-++|+..+ +++. +.+.+ ++|. T Consensus 305 -------~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~-~fg~~-~~g~ 371 (499) T protein:vir:80 305 -------TTQ----YFDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAG-TFTFD-ENGL 371 (499) T ss_pred -------ccc----CCCcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChh-hcCCC-cccc Confidence 000 0000000011111 0 0113333322233446666666666776665 3322 22112 2232 Q ss_pred hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-------CCCC-cccccEEEecCC-CccHHHHHHHHHHHHh Q lcl|Aclame:pro 200 YALGDTFASFFTG--SLNAVMKHIADVTQQHVVEDLVDQ-------NWGP-EEPAPRLVPAQL-GKEQPVTAEAIRALVE 268 (355) Q Consensus 200 ~Al~~vh~~v~~~--~~~ad~~~i~~~ln~~li~~l~~l-------Nf~~-~~~~P~~~~~~~-~~d~~~~ae~~~~l~~ 268 (355) ...-++..+.... .+..-.+.+...|. +|++.++.+ +... ....+.+.|+.. -.+..+.++.+.+++. T Consensus 372 ~TAtei~s~~~~l~~~~~~~~~~~~~~l~-~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~ 450 (499) T protein:vir:80 372 KTATEVVSEKSETYQTKNSHSQLIEQGIK-EMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKN 450 (499) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHH Confidence 2233343332222 33444556666664 465555432 2212 223457778764 3466788899999999 Q ss_pred CCCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccCCccc Q lcl|Aclame:pro 269 CGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSR 326 (355) Q Consensus 269 ~G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (355) +|+.. .+.++.+.+|+++.+-.++........... . +..+..+. .+... T Consensus 451 ~Gi~S----~et~l~~~~~~~d~ea~~el~~i~~E~~~~-~--~~~d~~g~--~ge~e 499 (499) T protein:vir:80 451 QGMIP----LKIALQRAWNITEAEADEWAEMLAKEKQAE-I--PNNDMTGI--FGEEE 499 (499) T ss_pred cCCCC----HHHHHhhcCCCChHHHHHHHHHHHHHhhcC-C--CCCCcccc--CCCCC Confidence 99755 256788888986532211111111111100 0 00000110 01001 No 228 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=90.95 E-value=0.018 Score=30.12 Aligned_cols=309 Identities=12% Similarity=0.092 Sum_probs=117.9 Q ss_pred CeEEEEeeeC---CEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccch-hH Q lcl|Aclame:pro 1 MFEQVYRIEN---GRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQS-LL 76 (355) Q Consensus 1 V~Eivw~~~~---g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~-ll 76 (355) |...||.+.+ +.+......| .++ +|+-..++..+ ++. .|. ...| |++.|+....|+.||.| .. T Consensus 210 v~~~V~pr~~~~~~~~~~~~~p~---~s~-~~~~~~~~~~v-l~e---sg~--~e~P---~~~~Rw~~~~ge~YGrg~P~ 276 (556) T protein:vir:73 210 VNHCITPNVNRDSGKMDSKNKPY---RSV-YFESGGDSDKL-LRE---SGF--DEFP---ILAPRWEVNGEDVYASSCPG 276 (556) T ss_pred EEEEEeccccccccccCcccceE---EEE-EEEecCCCcee-ccc---CCc--ccCC---ceeeeeeecCCcccccCccH Confidence 3333442221 1111111111 111 22222223222 221 122 2344 58899999999999999 59 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC-c Q lcl|Aclame:pro 77 RQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG-A 155 (355) Q Consensus 77 ~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~-~ 155 (355) ..++....--+...+.-+..+++-.-| |+. .+.+..... + ++..|...+...+.+ . T Consensus 277 ~~~lgD~k~L~~l~~~~l~~~~~~~~p-p~~-v~~~~~~~~--------------------~-~~~pgg~~~~~~~~~~~ 333 (556) T protein:vir:73 277 MLALGQVKALQVEQKRKAQLIDKATNP-PMV-APTSLKNQR--------------------V-SLLPGDVTYLDVISGQD 333 (556) T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhcC-cee-ccccccccc--------------------e-eeccCccccccCCCCcc Confidence 999999888888888889999986543 443 332211000 0 011122222222332 2 Q ss_pred eEEEecc-CCCcccHHHHHHHHHHHHHHHHhhhh-hccccCCccchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 156 NFTLTGV-QGKLPEMDGPIRYHDEQIARAVLAHF-LTLGGDKSTGSYALGDTFASFFTGS--LNAVMKHIADVTQQHVV- 230 (355) Q Consensus 156 ~ie~~~~-~g~~~~~~~~i~~~d~~Isk~ilgqt-lt~~~~~~~GS~Al~~vh~~v~~~~--~~ad~~~i~~~ln~~li- 230 (355) .|+.+.. +.+.......|+.+...|..++...- +.... .++...-+.||+....+.. +-.....+...+-.-+| T Consensus 334 ~i~p~~~~~~d~~~~~~~i~~~~~rI~~af~~d~~~~l~~-~~~~r~TAtEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~ 412 (556) T protein:vir:73 334 GFKPAYLVNPNTADLLADIQDTRQTINSAYFVDLFMMLQN-INTRSMPVEAVIEMKEEKLLMLGPVLERLNDEALNPLID 412 (556) T ss_pred ceeeeccccccHHHHHHHHHHHHHHHHHHhhcchhhhhcc-CCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH Confidence 4555432 22333455678999999999998753 22221 1223234455544333321 11111112111111122 Q ss_pred ---HHHHHhC-CCCc--c-cccEEEecCCCc-----cH------HHHHHHHHHHHhCCCcccc----hhhHHHHHHHhCC Q lcl|Aclame:pro 231 ---EDLVDQN-WGPE--E-PAPRLVPAQLGK-----EQ------PVTAEAIRALVECGAFTAD----PELEKDLRARYGL 288 (355) Q Consensus 231 ---~~l~~lN-f~~~--~-~~P~~~~~~~~~-----d~------~~~ae~~~~l~~~G~~~~~----~~~~~~~~e~~gl 288 (355) ..|.+.| +++. . ..+.+.+..+.. +. ..+++.+..|.+++-.+.+ +....++.+.+|+ T Consensus 413 r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aqk~~~~~~i~~~~~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gv 492 (556) T protein:vir:73 413 RVFSIMARKNMLPEPPDVLQGMPLRIEYISVMAQAQKSIGLTSLSQTVGFIGQLAQFKPEALDKLDVDQAIDAFSEMSGV 492 (556) T ss_pred HHHHHHHhcCCCCCCchhhcCceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhcCCHHHHHHHHHHHcCC Confidence 2222222 2221 1 122343332221 01 1112233333333221111 2236678899999 Q ss_pred CCCC-Cccccccccccc---cCCccc-c-ccccccccccCCcccCccccchhHHHHHhHhhhchHHhh Q lcl|Aclame:pro 289 PAPA-ERDDGADAAAAK---AAGRRR-A-KRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRR 350 (355) Q Consensus 289 p~~~-~~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (355) |..- ..++.+...... +.+..+ . ........... -+...-+.+....+++.... +-.+ T Consensus 493 p~~~irs~eev~~~rq~r~~~qq~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g---~~~~ 556 (556) T protein:vir:73 493 SPTVIVPQEQVQGIREERAKQAQAAQAMAMGQAAAQGAKT-LSETQTSDPSALTAIANAAG---APQQ 556 (556) T ss_pred ChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCHHHHHHHHHhhc---CCCC Confidence 8421 111111111100 000000 0 00000000000 00000011112222222111 1111 No 229 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=89.85 E-value=0.024 Score=29.46 Aligned_cols=284 Identities=8% Similarity=0.013 Sum_probs=113.1 Q ss_pred CeEEEEeee-------------------------CCEE-EEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeC Q lcl|Aclame:pro 1 MFEQVYRIE-------------------------NGRA-RLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIP 54 (355) Q Consensus 1 V~Eivw~~~-------------------------~g~~-~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip 54 (355) |-+++.+.+ +..+ ....+.+++ ..+..+....+|...+ + .+ +.....+| T Consensus 172 v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~v~~~~-~~~~~~~~e~d~~~~~-~-es--~y~~~e~P 246 (515) T protein:vir:70 172 LMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTHAQYAG-EGFWKINQSADDIPVG-K-ES--RIKSEKLP 246 (515) T ss_pred eeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEEEEecC-CCceEEEEecCceeec-c-cc--ccccccCC Confidence 222222110 0000 000111121 1111122233333221 1 11 11112344 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEG 134 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l 134 (355) |++.|+....|+.||.|....++....--+...+.-+.++++-.-| |+...+.+... T Consensus 247 ---~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~p-~~lv~~~g~~~------------------- 303 (515) T protein:vir:70 247 ---FIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAMARGAALMADI-KYLIRPGSQTD------------------- 303 (515) T ss_pred ---ceeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCC-CeeeCcccccc------------------- Confidence 5889999999999999999999999988888888889998875443 44332222110 Q ss_pred HHHHHHHhcCCceeEEccC-CceEEEeccCCCcccH---HHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHH- Q lcl|Aclame:pro 135 LQLAKEFRAGEAAGGYIPH-GANFTLTGVQGKLPEM---DGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASF- 209 (355) Q Consensus 135 ~~~~~~~~~G~~~~~v~p~-~~~ie~~~~~g~~~~~---~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v- 209 (355) ..++..|..++ ++|. ..++..+.. ++..+| ...|+.+...|..+++..++.... +...-+.||+... T Consensus 304 ---~~~l~~~~~g~-iv~g~~~~v~~~~~-~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~rd---~~rvTAtEV~~r~~ 375 (515) T protein:vir:70 304 ---VDHFVNSGTGE-VITGVAEDIHIVQL-GKYADLTPISAVLEVYTRRIGVIFMMETMTRRD---AERVTAVEIQRDAL 375 (515) T ss_pred ---hhhccccCCce-eecCCcccceeeec-CcccchhHHHHHHHHHHHHHHHHHhhhhhhccC---CccccHHHHHHHHH Confidence 11222233333 3443 345555542 333343 578999999999999987765421 1223345554333 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccE--EEec---CCCc-----cHHHHHHHHHHHHh-CCCcc--c Q lcl|Aclame:pro 210 --FTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPR--LVPA---QLGK-----EQPVTAEAIRALVE-CGAFT--A 274 (355) Q Consensus 210 --~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~--~~~~---~~~~-----d~~~~ae~~~~l~~-~G~~~--~ 274 (355) ...+---.-++-.+.+ .-|+.++..--++. .|. .... .... +.......++.+.. +++.+ . T Consensus 376 E~~~~LGpv~srL~~Ell-~Pli~r~~~~~~p~---~P~~~v~~~~vs~l~~L~r~q~~~~i~~~~q~i~~~~~~~p~~~ 451 (515) T protein:vir:70 376 EIEQNMGGVYSLFAMTMQ-TPIAMWGLQEAGDS---FTSELVDPVIVTGIEALGRMAELDKLANFAQYMSLPQTWPEPAQ 451 (515) T ss_pred HHHHHhhHHHHHHHHHHH-HHHHHHHHHhhCCC---CChhhcccceehhHHHHHHHHHHHHHHHHHHHHHHHhccChhHH Confidence 2222222222222222 22333332222221 121 1110 1110 11111111111110 11111 1 Q ss_pred chh----hHHHHHHHhCCCCCC--CccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHH Q lcl|Aclame:pro 275 DPE----LEKDLRARYGLPAPA--ERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAH 348 (355) Q Consensus 275 ~~~----~~~~~~e~~glp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (355) +.. ..+++.+.+|.|..- .+++.. ...+...+..+. ....... T Consensus 452 ~~id~d~~~~~~a~~~g~p~~~~rs~eev~-~~r~q~~~~~~~------------------------------~~~~~~~ 500 (515) T protein:vir:70 452 RAIRWGDYMDWVRGQISAELPFLKSEEEMQ-QEMAQQAQAQQE------------------------------AMLNEGV 500 (515) T ss_pred hhCCHHHHHHHHHHHhCCCccccCCHHHHH-HHHHHHHHHHHH------------------------------HHHHHhh Confidence 111 134556677776432 111111 111110000000 0000001 Q ss_pred hhhcCCC Q lcl|Aclame:pro 349 RRCAPDG 355 (355) Q Consensus 349 ~~~~~~~ 355 (355) -++++++ T Consensus 501 ~~a~~~~ 507 (515) T protein:vir:70 501 AKAVPGV 507 (515) T ss_pred hhhcccc Confidence 1111111 No 230 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=89.59 E-value=0.025 Score=29.32 Aligned_cols=292 Identities=10% Similarity=0.095 Sum_probs=119.4 Q ss_pred CeEEEEeeeC-CEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHH Q lcl|Aclame:pro 1 MFEQVYRIEN-GRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQA 79 (355) Q Consensus 1 V~Eivw~~~~-g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~ 79 (355) |.+.||-..+ +.| .+| ...+|..+. ...+..+ ....| |++.|+....|+.||.|....+ T Consensus 213 v~~~v~~~~~~~~~-------------~~~-~e~~g~~v~-~~~g~~~--f~~~P---~i~~Rw~~~~ge~YGrgp~~~~ 272 (536) T protein:vir:21 213 VYTHIYLDEDSGEY-------------LRY-EEVEGMEVQ-GSDGTYP--KEACP---YIPIRMVRLDGESYGRSYIEEY 272 (536) T ss_pred EEEEEEEecCCCcE-------------EEE-eccCCeeec-cccCccc--cccCC---eeeeeeeecCCCccccchHHHH Confidence 4444442221 111 122 123333221 1111111 12334 5889999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEcc-CCceEE Q lcl|Aclame:pro 80 YKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIP-HGANFT 158 (355) Q Consensus 80 ~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p-~~~~ie 158 (355) +....--+...+.-+..+++-.-++++ ..+.+... .. ++..+..++ ++| ..-++. T Consensus 273 l~D~k~L~~l~~~~l~~~~~a~~~~~l-v~p~g~~~------------------~~----~~~~~~~g~-~v~g~~~~v~ 328 (536) T protein:vir:21 273 LGDLRSLENLQEAIVKMSMISSKVIGL-VNPAGITQ------------------PR----RLTKAQTGD-FVTGRPEDIS 328 (536) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-cCcccccc------------------hh----hhccCCCcc-eecCCcccce Confidence 999988888888888888775444333 22222110 11 111122233 343 223444 Q ss_pred Eec--cCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 LTG--VQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG--SLNAVMKHIADVTQQHVVEDLV 234 (355) Q Consensus 159 ~~~--~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~--~~~ad~~~i~~~ln~~li~~l~ 234 (355) ++. ..++...-...|+.+...|.++++...++.. ++...-..||+....+. .+-.-...+...|-.-||.+++ T Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~l~~~---~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~ 405 (536) T protein:vir:21 329 FLQLEKQADFTVAKAVSDAIEARLSFAFMLNSAVQR---TGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLL 405 (536) T ss_pred eeeccccccchHHHHHHHHHHHHHHHHHhhhhcccC---CCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH Confidence 443 2233333467899999999999987765432 11223335554433322 1111222222222222333332 Q ss_pred HhCCCCc--cccc----EEEec-CCC-----ccHHHHHHHHHHHHhCCCcccc-----hhhHHHHHHHhCC-CC-CCCcc Q lcl|Aclame:pro 235 DQNWGPE--EPAP----RLVPA-QLG-----KEQPVTAEAIRALVECGAFTAD-----PELEKDLRARYGL-PA-PAERD 295 (355) Q Consensus 235 ~lNf~~~--~~~P----~~~~~-~~~-----~d~~~~ae~~~~l~~~G~~~~~-----~~~~~~~~e~~gl-p~-~~~~~ 295 (355) .+-.... .+.| +..+. ... .+...+...++.+..++-...+ +...+++.+.+|+ |. --..+ T Consensus 406 ~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~ 485 (536) T protein:vir:21 406 KQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTE 485 (536) T ss_pred HHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCH Confidence 2221100 0111 11111 111 1223334444555555421112 2235677888998 42 11112 Q ss_pred ccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 296 DGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) +.+....+......+. .........++.......+-.-..++|- T Consensus 486 eev~~~r~q~~~~~~~----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 529 (536) T protein:vir:21 486 EQKQQKMAQQSMQMGM----------------DNGAAALAQGMAAQATASPEAMAAAADS 529 (536) T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhcChhhHHhhhhc Confidence 2222111111000000 0000001111111111111111111211 No 231 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=88.43 E-value=0.032 Score=28.75 Aligned_cols=307 Identities=10% Similarity=-0.014 Sum_probs=114.7 Q ss_pred CeEEEEeeeCCEEEEeeeeec--CccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR--PPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r--~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) |...||-+.++ .+.+...+ |-.++ +|+...+|..++ .. .|. ...| |++.|+....|+.||.|.... T Consensus 211 v~~~V~pr~~~--~~~~~~~~~~p~~s~-~~~~~~d~~~vl-~e---sgy--~e~P---~i~~Rw~~~~ge~YGrgp~~~ 278 (555) T protein:vir:98 211 VIHAIEPRADR--DPSKRDDRNMAWKSV-YFEPGADETRTL-RE---SGY--RSFR---ALCPRWALVGGDIYGNSPAME 278 (555) T ss_pred EEEEEeeccCc--CcCCCCccccceEEE-EEEeccCCcccc-cc---CCc--ccCC---ceeeeeeecCCCccccchHHH Confidence 34444432221 11111111 10101 122222332211 11 122 2344 588999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCc-eE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGA-NF 157 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~-~i 157 (355) ++....-.+...+.-+..+++-.-| |+...+.+.... + ++.-|.-.++....+. .+ T Consensus 279 ~lgD~k~L~~l~~~~l~~~~~~~~p-p~~v~~~~~~~~---------------------~-~~~pgg~~~v~~g~~~d~~ 335 (555) T protein:vir:98 279 ALGDVRQLQHEQLRKAQAIDYKSNP-PLQLPVSAKNQD---------------------I-STVPGGLSYVDAAAPNGGI 335 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-ceeecccccccc---------------------c-eeccccccccccCCCCcce Confidence 9999988888888888999874332 444322211000 0 1111222222211111 22 Q ss_pred EE-eccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- Q lcl|Aclame:pro 158 TL-TGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVE----- 231 (355) Q Consensus 158 e~-~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~----- 231 (355) .. ++..++.......|+.+...|..+++..-+.+.+..++...-+.||+.... .......-.+...-++-|.| T Consensus 336 ~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~~~TAtEV~~r~~-E~~~~LG~v~~rl~~E~l~Pli~r~ 414 (555) T protein:vir:98 336 RTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNPQMTATEVAERHE-EKLLMLGPVLERMHNEILDPLIELT 414 (555) T ss_pred ecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHH Confidence 22 233333334567799999999999987622111111223344555554422 22222222222222221212 Q ss_pred --HHHHhC-CCCc--c-cccEEEecCCCcc-----HH---H---HHHHHHHHHhCCCc----ccchhhHHHHHHHhCCCC Q lcl|Aclame:pro 232 --DLVDQN-WGPE--E-PAPRLVPAQLGKE-----QP---V---TAEAIRALVECGAF----TADPELEKDLRARYGLPA 290 (355) Q Consensus 232 --~l~~lN-f~~~--~-~~P~~~~~~~~~d-----~~---~---~ae~~~~l~~~G~~----~~~~~~~~~~~e~~glp~ 290 (355) .|.+.+ +++. . ..+.+.+..+..- .. . +++.+..+.+++-. +-.+...+++.+.+|+|. T Consensus 415 ~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~ 494 (555) T protein:vir:98 415 FQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDP 494 (555) T ss_pred HHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCc Confidence 222222 2211 0 1123433322210 00 0 11222222222211 111223567889999984 Q ss_pred CC-CccccccccccccCCccc---cc-cccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 291 PA-ERDDGADAAAAKAAGRRR---AK-RLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) .- ..++.+....+...+..+ .. ........+..-..+.-.....+.+. ...+| T Consensus 495 ~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 552 (555) T protein:vir:98 495 ELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDTSKQNALTDV------------TRAFS 552 (555) T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHH------------Hhhhc Confidence 21 111111110000000000 00 00000000000000000000111111 11122 No 232 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=88.43 E-value=0.032 Score=28.75 Aligned_cols=307 Identities=10% Similarity=-0.014 Sum_probs=114.7 Q ss_pred CeEEEEeeeCCEEEEeeeeec--CccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR--PPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r--~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) |...||-+.++ .+.+...+ |-.++ +|+...+|..++ .. .|. ...| |++.|+....|+.||.|.... T Consensus 211 v~~~V~pr~~~--~~~~~~~~~~p~~s~-~~~~~~d~~~vl-~e---sgy--~e~P---~i~~Rw~~~~ge~YGrgp~~~ 278 (555) T protein:vir:10 211 VIHAIEPRADR--DPSKRDDRNMAWKSV-YFEPGADETRTL-RE---SGY--RSFR---ALCPRWALVGGDIYGNSPAME 278 (555) T ss_pred EEEEEeeccCc--CcCCCCccccceEEE-EEEeccCCcccc-cc---CCc--ccCC---ceeeeeeecCCCccccchHHH Confidence 34444432221 11111111 10101 122222332211 11 122 2344 588999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCc-eE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGA-NF 157 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~-~i 157 (355) ++....-.+...+.-+..+++-.-| |+...+.+.... + ++.-|.-.++....+. .+ T Consensus 279 ~lgD~k~L~~l~~~~l~~~~~~~~p-p~~v~~~~~~~~---------------------~-~~~pgg~~~v~~g~~~d~~ 335 (555) T protein:vir:10 279 ALGDVRQLQHEQLRKAQAIDYKSNP-PLQLPVSAKNQD---------------------I-STVPGGLSYVDAAAPNGGI 335 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-ceeecccccccc---------------------c-eeccccccccccCCCCcce Confidence 9999988888888888999874332 444322211000 0 1111222222211111 22 Q ss_pred EE-eccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- Q lcl|Aclame:pro 158 TL-TGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVE----- 231 (355) Q Consensus 158 e~-~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~----- 231 (355) .. ++..++.......|+.+...|..+++..-+.+.+..++...-+.||+.... .......-.+...-++-|.| T Consensus 336 ~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~~~TAtEV~~r~~-E~~~~LG~v~~rl~~E~l~Pli~r~ 414 (555) T protein:vir:10 336 RTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNPQMTATEVAERHE-EKLLMLGPVLERMHNEILDPLIELT 414 (555) T ss_pred ecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHH Confidence 22 233333334567799999999999987622111111223344555554422 22222222222222221212 Q ss_pred --HHHHhC-CCCc--c-cccEEEecCCCcc-----HH---H---HHHHHHHHHhCCCc----ccchhhHHHHHHHhCCCC Q lcl|Aclame:pro 232 --DLVDQN-WGPE--E-PAPRLVPAQLGKE-----QP---V---TAEAIRALVECGAF----TADPELEKDLRARYGLPA 290 (355) Q Consensus 232 --~l~~lN-f~~~--~-~~P~~~~~~~~~d-----~~---~---~ae~~~~l~~~G~~----~~~~~~~~~~~e~~glp~ 290 (355) .|.+.+ +++. . ..+.+.+..+..- .. . +++.+..+.+++-. +-.+...+++.+.+|+|. T Consensus 415 ~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~ 494 (555) T protein:vir:10 415 FQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDP 494 (555) T ss_pred HHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCc Confidence 222222 2211 0 1123433322210 00 0 11222222222211 111223567889999984 Q ss_pred CC-CccccccccccccCCccc---cc-cccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 291 PA-ERDDGADAAAAKAAGRRR---AK-RLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) .- ..++.+....+...+..+ .. ........+..-..+.-.....+.+. ...+| T Consensus 495 ~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 552 (555) T protein:vir:10 495 ELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDTSKQNALTDV------------TRAFS 552 (555) T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHH------------Hhhhc Confidence 21 111111110000000000 00 00000000000000000000111111 11122 No 233 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=88.43 E-value=0.032 Score=28.75 Aligned_cols=307 Identities=10% Similarity=-0.014 Sum_probs=114.7 Q ss_pred CeEEEEeeeCCEEEEeeeeec--CccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWR--PPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r--~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~ 78 (355) |...||-+.++ .+.+...+ |-.++ +|+...+|..++ .. .|. ...| |++.|+....|+.||.|.... T Consensus 211 v~~~V~pr~~~--~~~~~~~~~~p~~s~-~~~~~~d~~~vl-~e---sgy--~e~P---~i~~Rw~~~~ge~YGrgp~~~ 278 (555) T protein:vir:10 211 VIHAIEPRADR--DPSKRDDRNMAWKSV-YFEPGADETRTL-RE---SGY--RSFR---ALCPRWALVGGDIYGNSPAME 278 (555) T ss_pred EEEEEeeccCc--CcCCCCccccceEEE-EEEeccCCcccc-cc---CCc--ccCC---ceeeeeeecCCCccccchHHH Confidence 34444432221 11111111 10101 122222332211 11 122 2344 588999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCc-eE Q lcl|Aclame:pro 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGA-NF 157 (355) Q Consensus 79 ~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~-~i 157 (355) ++....-.+...+.-+..+++-.-| |+...+.+.... + ++.-|.-.++....+. .+ T Consensus 279 ~lgD~k~L~~l~~~~l~~~~~~~~p-p~~v~~~~~~~~---------------------~-~~~pgg~~~v~~g~~~d~~ 335 (555) T protein:vir:10 279 ALGDVRQLQHEQLRKAQAIDYKSNP-PLQLPVSAKNQD---------------------I-STVPGGLSYVDAAAPNGGI 335 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-ceeecccccccc---------------------c-eeccccccccccCCCCcce Confidence 9999988888888888999874332 444322211000 0 1111222222211111 22 Q ss_pred EE-eccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- Q lcl|Aclame:pro 158 TL-TGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVE----- 231 (355) Q Consensus 158 e~-~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~----- 231 (355) .. ++..++.......|+.+...|..+++..-+.+.+..++...-+.||+.... .......-.+...-++-|.| T Consensus 336 ~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~~~~~~TAtEV~~r~~-E~~~~LG~v~~rl~~E~l~Pli~r~ 414 (555) T protein:vir:10 336 RTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANGTNPQMTATEVAERHE-EKLLMLGPVLERMHNEILDPLIELT 414 (555) T ss_pred ecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCCCCCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHH Confidence 22 233333334567799999999999987622111111223344555554422 22222222222222221212 Q ss_pred --HHHHhC-CCCc--c-cccEEEecCCCcc-----HH---H---HHHHHHHHHhCCCc----ccchhhHHHHHHHhCCCC Q lcl|Aclame:pro 232 --DLVDQN-WGPE--E-PAPRLVPAQLGKE-----QP---V---TAEAIRALVECGAF----TADPELEKDLRARYGLPA 290 (355) Q Consensus 232 --~l~~lN-f~~~--~-~~P~~~~~~~~~d-----~~---~---~ae~~~~l~~~G~~----~~~~~~~~~~~e~~glp~ 290 (355) .|.+.+ +++. . ..+.+.+..+..- .. . +++.+..+.+++-. +-.+...+++.+.+|+|. T Consensus 415 ~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~ 494 (555) T protein:vir:10 415 FQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDP 494 (555) T ss_pred HHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCc Confidence 222222 2211 0 1123433322210 00 0 11222222222211 111223567889999984 Q ss_pred CC-CccccccccccccCCccc---cc-cccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 291 PA-ERDDGADAAAAKAAGRRR---AK-RLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) .- ..++.+....+...+..+ .. ........+..-..+.-.....+.+. ...+| T Consensus 495 ~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 552 (555) T protein:vir:10 495 ELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDTSKQNALTDV------------TRAFS 552 (555) T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHH------------Hhhhc Confidence 21 111111110000000000 00 00000000000000000000111111 11122 No 234 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=88.04 E-value=0.035 Score=28.58 Aligned_cols=191 Identities=13% Similarity=0.046 Sum_probs=81.6 Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEeccC Q lcl|Aclame:pro 84 LLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQ 163 (355) Q Consensus 84 ~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~~~~ 163 (355) .+|-.++. ..+ +.. +.. ......++.++++-..+.++...+.+++.++.+ T Consensus 1 V~k~~~l~---~~~---------------------~~~--~~~----~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~ 50 (201) T protein:vir:10 1 MWKAKGLA---DLC---------------------DDS--DGA----ARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSD 50 (201) T ss_pred CccchHHH---HHh---------------------cCC--hHH----HHHHHHHHHHhhhhhhhheeecCCcceeeeecC Confidence 11111110 111 000 111 112223333444323344455556778877654 Q ss_pred CCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc Q lcl|Aclame:pro 164 GKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEP 243 (355) Q Consensus 164 g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~ 243 (355) - .....++...-.+|+-+.--+..-+-+.+-+|=.|.|+.-...+-+.+++.+.....-+.+.|++.++. + + T Consensus 51 l--sGl~d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~~----~--~ 122 (201) T protein:vir:10 51 I--GGIDTFLSQKFDRIVALSGIHEIILKGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFIVT----E--Q 122 (201) T ss_pred c--CChHHHHHHHHHHHHhHhcCchhhhcCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C--C Confidence 3 345667777777777664444221222333454566777778888888888854433333345553321 1 1 Q ss_pred ccEEEecCCC--------ccHHHHHHHHHHHHhCCCcccchhhHHHHHHHhCCCC--CCCccccccccccccCCcccccc Q lcl|Aclame:pro 244 APRLVPAQLG--------KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPA--PAERDDGADAAAAKAAGRRRAKR 313 (355) Q Consensus 244 ~P~~~~~~~~--------~d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~glp~--~~~~~~~~~~~~~~~~~~~~~~~ 313 (355) --.|.|...- +..+..+++++++++.|++.+ +.+|+++--.. ..-.+....+...... . T Consensus 123 ~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~g~i~~-----~e~r~~L~~~~~~~~~~~~~~~~~~~~~e------~ 191 (201) T protein:vir:10 123 EWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAAGIIDA-----DEARDTLRAISTEVKIGEGSIQTEVVINE------S 191 (201) T ss_pred CceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHhcCCcCCCCCCCCCccccccc------c Confidence 1244554322 122456788888999998764 34555442110 0000000000000000 0 Q ss_pred ccccccccCCcccCcccc Q lcl|Aclame:pro 314 LPGQRQGAALPSRSPRAD 331 (355) Q Consensus 314 ~~~~~~~~~~~~~~~~~~ 331 (355) .++... |... T Consensus 192 ~dp~~~--------~~~~ 201 (201) T protein:vir:10 192 EDPLDV--------SANN 201 (201) T ss_pred CCCCCC--------CCCC Confidence 000000 0000 No 235 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=87.58 E-value=0.038 Score=28.38 Aligned_cols=293 Identities=9% Similarity=0.047 Sum_probs=116.2 Q ss_pred CeEEEEeeeCC--------------------------EEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeC Q lcl|Aclame:pro 1 MFEQVYRIENG--------------------------RARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIP 54 (355) Q Consensus 1 V~Eivw~~~~g--------------------------~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip 54 (355) |-+++++..-. .-....+.+++-... .+...-+|...+ . . .+.....+| T Consensus 170 v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~-~~~~~~d~~~~~-~-~--s~y~~~e~P 244 (517) T protein:vir:10 170 VLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDKDNVKLYTHAKRTKDGKY-LIRQSADDVPVG-K-E--STVTEDKSP 244 (517) T ss_pred eEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCcCceEEEEEEEEeCCCce-EEEEEeCceeec-c-c--cccccccCC Confidence 33333221100 000000111100000 011112222211 1 1 111112344 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEG 134 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l 134 (355) |++.|+....|+.||.|...-+.....--+..-+.-+..++.-.-| |+...+.+... T Consensus 245 ---~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~~~~~~~a~~~-~~lv~~~~~~~------------------- 301 (517) T protein:vir:10 245 ---FLILTWKRSYGEDYGRGMAEDHAGAFFVIQFLSEALARGMALMADV-KYLVKPGSYTD------------------- 301 (517) T ss_pred ---eeeeeeeecCCCCcccchHHHhHHHHHHHHHHHHHHHHHHHHhccC-CcccCcccccc------------------- Confidence 6999999999999999999999999988877778888888775433 33322222111 Q ss_pred HHHHHHHhcCCceeEEccCC-ceEEEec--cCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 135 LQLAKEFRAGEAAGGYIPHG-ANFTLTG--VQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 135 ~~~~~~~~~G~~~~~v~p~~-~~ie~~~--~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) ..++..|.. +.++|.. .++..+. ..++...-...|+.+...|.++++...++... +...-+.||+....+ T Consensus 302 ---~~~l~~~~~-g~~~~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~~~---~~rvTAtEV~~r~~E 374 (517) T protein:vir:10 302 ---INQFVEGGS-GAVLHGVEGDIHIVQLGKYADYTPIQAVLNDYRQRIGRVFMMEAMTRRD---AERVTAYEIQRDAML 374 (517) T ss_pred ---hhhccCCCc-cccccCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhhccC---CccccHHHHHHHHHH Confidence 011222222 2334432 3444443 22233334778999999999999876554321 122233555433322 Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhCCC-------CcccccEEEecCCC-----ccHHHHHHHHHHHHhCCCccc-- Q lcl|Aclame:pro 212 GSLNAVMKHIADV---TQQHVVEDLVDQNWG-------PEEPAPRLVPAQLG-----KEQPVTAEAIRALVECGAFTA-- 274 (355) Q Consensus 212 ~~~~ad~~~i~~~---ln~~li~~l~~lNf~-------~~~~~P~~~~~~~~-----~d~~~~ae~~~~l~~~G~~~~-- 274 (355) .. .+|-.+ |+..++-+|+..=|. ....-|.+.- ... .+...+...++.+..+.-.++ T Consensus 375 ~~-----~~LGpv~~rl~~Ell~Pli~r~~~~l~~~l~~~~v~~~~~s-~la~l~r~~~~~~i~~~~~~i~~~a~~~~~~ 448 (517) T protein:vir:10 375 VE-----QSLGGVYSLFATTFQGPLARWFMNGISSILTSKNVSPTILT-GIEALGRMAELDKLGTFNGYVSMTAQWPEPL 448 (517) T ss_pred HH-----HHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccceeec-cHHHHHHHHHHHHHHHHHHHHHHhhcCChHH Confidence 21 112221 222222222222121 1111122111 111 111111122222222210111 Q ss_pred -----chhhHHHHHHHhCCCCCC--CccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchH Q lcl|Aclame:pro 275 -----DPELEKDLRARYGLPAPA--ERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPA 347 (355) Q Consensus 275 -----~~~~~~~~~e~~glp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355) .+...+++.+.+|+|..- .+++.... ..... ..++.....++....-...-. T Consensus 449 ~~~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~-~~~~~--------------------~~~~~~~~~~~ag~~~~~~~~ 507 (517) T protein:vir:10 449 QQAIKWPDFTDWVQGQISANFPFFKTQDELNAE-AQAQQ--------------------EQEATKYAAEQAGKAIPDMVK 507 (517) T ss_pred HhcCCHHHHHHHHHHHhCCChhhcCCHHHHHHH-HHHHH--------------------HHHHHHHHHHHHHHHHHHHHh Confidence 122356778889998421 11111110 00000 000111111111122233334 Q ss_pred HhhhcCCC Q lcl|Aclame:pro 348 HRRCAPDG 355 (355) Q Consensus 348 ~~~~~~~~ 355 (355) ..+.+|+| T Consensus 508 ~~~~~~~~ 515 (517) T protein:vir:10 508 NGQINPQG 515 (517) T ss_pred CCCCCCCC Confidence 56677888 No 236 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=86.29 E-value=0.047 Score=27.89 Aligned_cols=315 Identities=12% Similarity=0.092 Sum_probs=130.0 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCc-eEEEe----ecCCCCCCceeeCCccEEEEecC-CCCCccccch Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG-LVAIE----QWGVFGKATVRIPVDRLVVFVNE-REGANWLGQS 74 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~-l~~~~----q~~~~g~~~~~ip~~k~i~~~~~-~~~~~p~G~~ 74 (355) .+.++ .++..-.+.+|...+|+.+.++. +.... ..++- .+...+...+.||...++++.++ .....+++.| T Consensus 142 y~Hki--ik~~k~GI~elr~lDPr~i~~vr-~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iis 218 (533) T protein:vir:58 142 FLHIL--EKGSDGTIEKFQVVSPYIFSKRY-NPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRS 218 (533) T ss_pred EEEec--cCCcccchhhheecCCeeeEEEE-eeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceeh Confidence 22221 11223345566677777775432 22222 11111 01122345578998776666655 3457889999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecC---CCCccccchhhHHHHHHHHHHHHHHHHHHHhc----CCce Q lcl|Aclame:pro 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAP---LPEAIARDTARAEQWLNDQKEEGLQLAKEFRA----GEAA 147 (355) Q Consensus 75 ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~---~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~----G~~~ 147 (355) .|+++..+|=-.+......+ +.|.. --|-+..-| +.-. ..++++-. +.++..++. .+.. T Consensus 219 yLhkAiKp~NQLkmiEDAlV--IYRis-RAPeRRvFYIDVGNlp----k~KAeqYl-------~~im~k~kNklvYDa~T 284 (533) T protein:vir:58 219 YLESARAIWNQLRLMEDALM--LYRVV-RSVDRRVFYVDVGNVP----PDKINEYL-------TNIAMQYKRDYWVRNNQ 284 (533) T ss_pred hhhHHHHHHHHHHHHHHHHH--HHhhc-CChhheEEEEeecCCC----ccCHHHHH-------HHHHHhcccceEEeccC Confidence 99999999855554433322 22221 122221111 1110 12233322 222222221 1122 Q ss_pred eEEc-----------------c-----CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHH Q lcl|Aclame:pro 148 GGYI-----------------P-----HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDT 205 (355) Q Consensus 148 ~~v~-----------------p-----~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~v 205 (355) +=|. | .|++|..|.. |+ -.-.+=|+|+.+++.+++-.+.--++.+++. ...+++ T Consensus 285 Gev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpG-g~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~~f--gr~~eI 360 (533) T protein:vir:58 285 NQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQG-SK-VDLAEDVEYMLNRLISALKVPKAFIGYEGDV--NAKNTL 360 (533) T ss_pred CeEeeccchhhhhhhHhhhcccccCCCccceeeecCC-CC-CCcHHHHHHHHHHHHHHhCCCeeecCCCCCC--ccchhh Confidence 2221 1 3588888863 33 3455679999999999999886544444332 222443 Q ss_pred -HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccccEEEecCCC-----ccHHHHHHHHHHHHhCCCcccchh Q lcl|Aclame:pro 206 -FASF-FTGSLNAVMKHIADVTQQHVVEDLVDQNWG-PEEPAPRLVPAQLG-----KEQPVTAEAIRALVECGAFTADPE 277 (355) Q Consensus 206 -h~~v-~~~~~~ad~~~i~~~ln~~li~~l~~lNf~-~~~~~P~~~~~~~~-----~d~~~~ae~~~~l~~~G~~~~~~~ 277 (355) ..++ |...+......+...|.+||+ ++.- ..+.+ +|.|.... .+.+.+.+++..|..+--.+ T Consensus 361 tRDEiKF~KFI~rLR~rF~~ll~~qLi-----lk~iit~eew-~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyv---- 430 (533) T protein:vir:58 361 ATQDIKFNNTIKRIQGFFVEELERMVR-----MNKEFADQDF-RLVMNRSNSIVEGERFAVIEQRIGIAERLKGWV---- 430 (533) T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccc-----cccCcchhhe-eeeeeccchHHHHHHHHHHHHHHHHHHHhcchh---- Confidence 2222 555677777777777777664 3321 12222 45544322 23334455566555442222 Q ss_pred hHHHHH-HHhCCCCCCCcccc-------------------cccc--ccccCCccccccccccccccCCcccCccccchhH Q lcl|Aclame:pro 278 LEKDLR-ARYGLPAPAERDDG-------------------ADAA--AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRR 335 (355) Q Consensus 278 ~~~~~~-e~~glp~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (355) ...|++ +.|.+++.....+. ..+. .+....+...+.++ .....++. ..+.. T Consensus 431 gk~yi~k~ILr~tdei~~q~e~ie~E~~~~~~~~~~~~~e~~~~~~~~~~~~p~~~~~~~--~~~~~~~~-----~~~~~ 503 (533) T protein:vir:58 431 REDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGR--TEFDFGTE-----GGEEL 503 (533) T ss_pred hHHHHHHHHhcCChhhhHHHHHHHHhhcCCCCCCCCcccccCCcccCccccCcccCCCCh--hhHhcccC-----Ccccc Confidence 235654 34455431111000 0000 00000000000000 00000000 00000 Q ss_pred HHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 336 RGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~ 355 (355) .++.+ +..+..... .-|| T Consensus 504 ~~~~~-~~~a~~~~~-~~~g 521 (533) T protein:vir:58 504 GGELN-LGGAFEEFE-EETG 521 (533) T ss_pred ccccc-ccccchhhh-hhcC Confidence 00000 000000000 1112 No 237 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=84.77 E-value=0.058 Score=27.37 Aligned_cols=309 Identities=8% Similarity=0.000 Sum_probs=115.1 Q ss_pred CeEEEEeeeC------CEEEEe------eeeecCccceeeee---ecCCCceEEEeecCCC----CCCce-eeCCccEEE Q lcl|Aclame:pro 1 MFEQVYRIEN------GRARLG------KLAWRPPRTISRFD---VAPDGGLVAIEQWGVF----GKATV-RIPVDRLVV 60 (355) Q Consensus 1 V~Eivw~~~~------g~~~~~------~l~~r~~~~i~~f~---~~~~g~l~~~~q~~~~----g~~~~-~ip~~k~i~ 60 (355) |-+++.+..- -.|..+ +....|...+..++ ...++.-..+.+...+ +..++ .+-..=|++ T Consensus 162 vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v~p~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~P~~~ 241 (522) T protein:vir:10 162 VLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYVKLDKSSGRWVWHQEAFDKIIPDSRSTAPKNASPWLP 241 (522) T ss_pred eeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEEEeeccCCceEEEEccCCccccccccccccccCCcee Confidence 2222221100 000000 00111111111111 1111111111111100 00000 111123688 Q ss_pred EecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 61 FVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKE 140 (355) Q Consensus 61 ~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~ 140 (355) .|+..-+|+.||.|....++....--+...+.-+.++++-. -.|+...+.+.... .+ T Consensus 242 ~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~-~p~~lv~~~~~~~~----------------------~~ 298 (522) T protein:vir:10 242 LRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAAS-KVVFLVSPSSTTKP----------------------AT 298 (522) T ss_pred eeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceeecccccccc----------------------cc Confidence 99999999999999999999999888888899999999854 33544433322111 11 Q ss_pred HhcCCceeEEccCCceEEEecc--CCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHH---HHH Q lcl|Aclame:pro 141 FRAGEAAGGYIPHGANFTLTGV--QGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTG---SLN 215 (355) Q Consensus 141 ~~~G~~~~~v~p~~~~ie~~~~--~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~---~~~ 215 (355) +..|...+++.....++..+.. .++.......|+.+.+.|+.+++ ++. . .+++..-+.||+....+. +-- T Consensus 299 l~~~~~~~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ri~~aFl---~~~-~-~d~~rvTAtEV~~r~~E~~~~LGp 373 (522) T protein:vir:10 299 IAKAGNGAIVQGRPEDVAVIQVGKTADFSTAANMATAIEKRLLEAFL---VMN-V-RNAERVTAEEVRLTQLELEQQLGG 373 (522) T ss_pred ccCCCCcceecCCCccceeecccccccchHHHHHHHHHHHHHHHHHh---hcc-C-CCCCCCCHHHHHHHHHHHHHHhhH Confidence 2223344455444455666543 22333357789999999999875 221 1 122333445555443322 111 Q ss_pred HHHHHHHHHHHHHHHHH----HHHhC-CCCcccccE-E----EecCCC-----ccHHHHHHHHHHHHh-CCCcccc---- Q lcl|Aclame:pro 216 AVMKHIADVTQQHVVED----LVDQN-WGPEEPAPR-L----VPAQLG-----KEQPVTAEAIRALVE-CGAFTAD---- 275 (355) Q Consensus 216 ad~~~i~~~ln~~li~~----l~~lN-f~~~~~~P~-~----~~~~~~-----~d~~~~ae~~~~l~~-~G~~~~~---- 275 (355) -..++-.+.+ .-+|.. |.+-+ +++ .|. + ...... .+...+...++.+.. +|-.... T Consensus 374 v~~rl~~E~l-~Pli~r~~~il~r~g~lP~---~p~~~~~~~~v~~is~Laraq~~~~l~~~~~~i~~~~~p~~~~~~id 449 (522) T protein:vir:10 374 IFSLLVIEFL-IPYLNRTLLVLQRSNQIPK---LPKDIVRPTIVAGVNALGRGQDRESLTAFVGTIAQTLGPEALMQYLN 449 (522) T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCCC---CCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhCchhhhhcCC Confidence 1111111111 112221 22212 111 121 1 111111 111222333333322 2321111 Q ss_pred -hhhHHHHHHHhCCCCC--CCccccccccccccCCc--cccccccccccccCCcccCccccchhHHHHHhHhhhchHHhh Q lcl|Aclame:pro 276 -PELEKDLRARYGLPAP--AERDDGADAAAAKAAGR--RRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRR 350 (355) Q Consensus 276 -~~~~~~~~e~~glp~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (355) +...+++.+.+|+|.+ -..++.+.+......+. .++-....... +... .....+.+.+. .+ T Consensus 450 ~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~~~~~~~~~~~a~~~-~~~~-~~~~~~~~~~~------------~~ 515 (522) T protein:vir:10 450 PLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQQAAQQSLVDQAGQM-TGSP-LMDPTKNPQLM------------DE 515 (522) T ss_pred HHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc-ccCccccHHHH------------HH Confidence 1125677888899742 11111111111000000 00000000000 0000 00001111111 11 Q ss_pred hcCCC Q lcl|Aclame:pro 351 CAPDG 355 (355) Q Consensus 351 ~~~~~ 355 (355) ..++| T Consensus 516 ~~~~~ 520 (522) T protein:vir:10 516 EQPPM 520 (522) T ss_pred hCCCC Confidence 12333 No 238 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=81.86 E-value=0.082 Score=26.54 Aligned_cols=290 Identities=11% Similarity=-0.014 Sum_probs=110.5 Q ss_pred CeEEEEeeeCC----------EEEEeeeeecCccceee----------------eeecCCCceEEEeecCCCCCCceeeC Q lcl|Aclame:pro 1 MFEQVYRIENG----------RARLGKLAWRPPRTISR----------------FDVAPDGGLVAIEQWGVFGKATVRIP 54 (355) Q Consensus 1 V~Eivw~~~~g----------~~~~~~l~~r~~~~i~~----------------f~~~~~g~l~~~~q~~~~g~~~~~ip 54 (355) |-+++.+..-. ..........+...+.. +..+-+|..++ . . .+.....+| T Consensus 165 v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~sv~~e~~g~~i~-~-e--s~y~~~e~P 240 (514) T protein:vir:80 165 PAVVVLRQQMPFRELTPEIQADAQAKQIAKRDSDKCDLYTVIEWQPTPNGKRCAVWHELEGKRVG-P-E--SSYPAHLCP 240 (514) T ss_pred eEEEEeeeeecHHHhhhhhhhhhhhhhccCCCCCceEEEEEEEeecCCCCeEEEEEEeccceeec-c-c--CccccccCC Confidence 33333321100 00000001111111110 11122222221 1 0 111112344 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEG 134 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l 134 (355) |++.|+..-.|+.||.|....++....--+...+.-+..+++-.- .|+...+.+... T Consensus 241 ---~i~~Rw~~~~ge~YGrgp~~~al~D~k~L~~l~~~~l~~~~~a~~-~~~~v~~~g~~~------------------- 297 (514) T protein:vir:80 241 ---YVPVAWNVPDGEHYGRGYVEEYSGDFARLSILSERLGLYEFEALS-LLNLVDEAKGGA------------------- 297 (514) T ss_pred ---eeeeeeEecCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCceeCcccccc------------------- Confidence 589999999999999999999999998888888888888887543 344332222110 Q ss_pred HHHHHHHhcCCceeEEccCCceEEEeccCCCcccH---HHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 135 LQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEM---DGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 135 ~~~~~~~~~G~~~~~v~p~~~~ie~~~~~g~~~~~---~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) ..++..|..++++-.....|..+.. ++..+| ...|+.+...|..+++. +... ..++..-+.||+....+ T Consensus 298 ---~~~l~~~~~g~~v~g~~~~v~~~~~-~~~~d~~~~~~~i~~~~~rI~~aFml---~~~~-rd~~rvTAtEV~~r~~E 369 (514) T protein:vir:80 298 ---VDDYRDAETGDFVPGQVGSVASYER-GDYNKIAQASASVESIVMRLNRAFMY---TGQV-RDAERVTVEEIRTVAEE 369 (514) T ss_pred ---hhhhcccCCceeecCCCccceeeec-CcccchHHHHHHHHHHHHHHHHHHhh---hccC-CCCCCCCHHHHHHHHHH Confidence 1112223333333223345555543 223343 57899999999998763 2111 12222344555543322 Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHH-h---CCCCcccc------cEEEecCCC-----ccHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 212 G---SLNAVMKHIADVTQQHVVEDLVD-Q---NWGPEEPA------PRLVPAQLG-----KEQPVTAEAIRALVECGAFT 273 (355) Q Consensus 212 ~---~~~ad~~~i~~~ln~~li~~l~~-l---Nf~~~~~~------P~~~~~~~~-----~d~~~~ae~~~~l~~~G~~~ 273 (355) . +---..++-.+.+ .-||.+.+. + +.+.-.+. |.++.. .+ .+.......++.+..++-.. T Consensus 370 ~~~~LGpv~~rl~~Ell-~Pli~r~~~il~r~~~g~lP~~p~~l~~~~~vs~-la~l~r~~~~~~l~~~~~~i~~l~~~~ 447 (514) T protein:vir:80 370 AENLLGGVYSLLAETLQ-APLAYLTMYEASRGNGGMLLGIAQGVYRPSIITG-IPALTRNIETANILRATQEASAIVPAL 447 (514) T ss_pred HHHHhhHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCCCCchhhcceeeec-HHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 2 2222222222222 223333221 1 11111111 222211 11 11111222222222221111 Q ss_pred ---cc----hhhHHHHHHHhCCCCC--CCccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhh Q lcl|Aclame:pro 274 ---AD----PELEKDLRARYGLPAP--AERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPR 344 (355) Q Consensus 274 ---~~----~~~~~~~~e~~glp~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (355) .+ +...+++.+.+|+|.. -..++++........+ . ........ T Consensus 448 p~v~d~id~d~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~--------------------------~--~~~~~~~~ 499 (514) T protein:vir:80 448 VQLSKRFDPEKLVERIFANNSVDLSTLSKDPDVVAAEAEQEAA--------------------------L--AQQQLDVA 499 (514) T ss_pred hhhhhcCCHHHHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHH--------------------------H--HHHHHHHH Confidence 11 1235667788899842 1111111110000000 0 00000000 Q ss_pred chHHhhhcCCC Q lcl|Aclame:pro 345 HPAHRRCAPDG 355 (355) Q Consensus 345 ~~~~~~~~~~~ 355 (355) +....-.+.-| T Consensus 500 ~~~~~~~~~~~ 510 (514) T protein:vir:80 500 SGALAAETSAG 510 (514) T ss_pred HHHHHHhhhcc Confidence 00000001111 No 239 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=80.80 E-value=0.092 Score=26.28 Aligned_cols=326 Identities=16% Similarity=0.131 Sum_probs=124.0 Q ss_pred CeEEEEeee--CC----EE----------EEeeeeecCcccee--eeee-c----CCCceEEEeecCCCCCCceeeCCcc Q lcl|Aclame:pro 1 MFEQVYRIE--NG----RA----------RLGKLAWRPPRTIS--RFDV-A----PDGGLVAIEQWGVFGKATVRIPVDR 57 (355) Q Consensus 1 V~Eivw~~~--~g----~~----------~~~~l~~r~~~~i~--~f~~-~----~~g~l~~~~q~~~~g~~~~~ip~~k 57 (355) ..=++...+ +. -+ .++.|...+|.++. -++. + +.++-.++. ..| ..+-..+ T Consensus 199 Ga~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~---V~G---~~IH~SR 272 (698) T protein:vir:10 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW---MIG---SEVHATR 272 (698) T ss_pred ceEEEEEeecCccccccccccccccccCccceeeeeecccccccchhhhccchhhccCCCceEE---Eec---ceeccee Confidence 111111111 10 00 01113222322111 0000 0 001101110 001 1233334 Q ss_pred EEEEecCC------CCCccccchhHHHHHHHHHH---HHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 58 LVVFVNER------EGANWLGQSLLRQAYKNWLL---KDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 58 ~i~~~~~~------~~~~p~G~~ll~~~~~~~~~---K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) ++.+.... ..-|.+|.|+...++..+.- -+..... .+-++ -+.+++. +. +..-.+. .+ . T Consensus 273 L~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~---Li~~~--~~~~l~~--dl-a~aL~~g-~~---~ 340 (698) T protein:vir:10 273 LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD---IVKQF--SVSGILM--DL-AQALTPG-AN---V 340 (698) T ss_pred EEEecCCCchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHH---HHHHh--hHHHHHH--HH-HHhcCCh-hh---H Confidence 44333221 23456799999888877422 1111111 11111 1111100 00 0000000 00 0 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccC-CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPH-GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA 207 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~-~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~ 207 (355) + +..-.+++..+++ +.+..++.+ +.+++.++. +......+|...-.+||-+.--+..-.=+.+-.|=.|.|+.-. T Consensus 341 ~-l~~R~eli~~~Rs-n~G~~llDk~~Eefeq~st--~lSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~ 416 (698) T protein:vir:10 341 D-LSMRAELINRYRD-NRNILFLDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEI 416 (698) T ss_pred H-HHHHHHHHHHhcC-ccceEEEecCCcceEEEec--CcCCHHHHHHHHHHHHHhhhcCchhhhhccCCcccCccchhhH Confidence 1 1122345555554 345567773 567776643 4456778888888888876544432111222335567788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cH-------HHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 208 SFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQ-------PVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 208 ~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~-------~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) .+.-+.+++.....-..+-+.|+..|..-=||...+--.|+|...-+ ++ ++.|+.++.+++.|++.+ T Consensus 417 rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~----- 491 (698) T protein:vir:10 417 RVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRP----- 491 (698) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCH----- Confidence 88888888777544333334466665555566554334556654322 22 345677788899998765 Q ss_pred HHHHHHhCCC----------CCCC----cccccccc-----ccccCCccccccccccccccCCcccCccccchhHHHHH- Q lcl|Aclame:pro 280 KDLRARYGLP----------APAE----RDDGADAA-----AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPL- 339 (355) Q Consensus 280 ~~~~e~~glp----------~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 339 (355) +.+|+++.-. ..++ .|+..... .....++...+..++....+. ..+|.+.+..+..-. T Consensus 492 ~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 569 (698) T protein:vir:10 492 DQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTAPGGARAGA--TAPPAAANVNANANPR 569 (698) T ss_pred HHHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhhhcCCcCCCCcccccccccccCCC--CCCcccccccCCCCcc Confidence 3555554321 0000 01111100 111111222222222211111 111111111100000 Q ss_pred ---hHh------------------hhchHHhhhcCCC Q lcl|Aclame:pro 340 ---RRR------------------PRHPAHRRCAPDG 355 (355) Q Consensus 340 ---~~~------------------~~~~~~~~~~~~~ 355 (355) .+. .......-++|-| T Consensus 570 ~~~~~~~~~~a~giv~~~g~~vLL~~r~~g~W~lPgG 606 (698) T protein:vir:10 570 EAGAQDAAMRAAGIVFRAGDKVLLMKRPAGDWGLPAG 606 (698) T ss_pred ccCcccceeeEEEEEEEcCCeEEEEEecCCCcccCcc Confidence 000 0111111222222 No 240 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=77.42 E-value=0.12 Score=25.54 Aligned_cols=328 Identities=13% Similarity=0.054 Sum_probs=122.6 Q ss_pred CeEEEEeee--CC----EE----------EEeeeeecCccceee--eee-c----CCCceEEEeecCCCCCCceeeCCcc Q lcl|Aclame:pro 1 MFEQVYRIE--NG----RA----------RLGKLAWRPPRTISR--FDV-A----PDGGLVAIEQWGVFGKATVRIPVDR 57 (355) Q Consensus 1 V~Eivw~~~--~g----~~----------~~~~l~~r~~~~i~~--f~~-~----~~g~l~~~~q~~~~g~~~~~ip~~k 57 (355) ..=++...+ +. -+ .++.|...+|.++.= ++. + +.++-.++. .. +..+-..+ T Consensus 199 Ga~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~---V~---G~kIH~SR 272 (695) T protein:vir:36 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW---MI---GTEVHATR 272 (695) T ss_pred ceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE---Ee---ceEEeeee Confidence 111111111 00 00 011233333221110 000 0 001100110 00 11222333 Q ss_pred EEEEecCC------CCCccccchhHHHHHHHHH---HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 58 LVVFVNER------EGANWLGQSLLRQAYKNWL---LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 58 ~i~~~~~~------~~~~p~G~~ll~~~~~~~~---~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) ++.+.-.. ..-|.+|.|+...++..+. -.+...... +-++ -+.+++. + .+.+-... .+ T Consensus 273 L~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~L---i~~~--~v~~lk~--d-la~aL~~g-~~---- 339 (695) T protein:vir:36 273 LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDI---VKQF--SVSGILM--D-LAQALMPG-AN---- 339 (695) T ss_pred EEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHH---HHhh--hHHHHHH--H-HHHhhcCh-hH---- Confidence 33332111 2336779999888876532 122222111 1111 1111110 0 00000000 00 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccC-CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPH-GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA 207 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~-~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~ 207 (355) ..+....+++..+++ +....++.+ +.+++.++. +......+|...-.+||-+.--+..-.=+.+-.|=.|.|+.-. T Consensus 340 ~~l~~R~eli~~~Rs-n~G~~llDk~~Eefeq~st--slSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~ 416 (695) T protein:vir:36 340 VDLSMRAELINRYRD-NRNILFLDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEI 416 (695) T ss_pred HHHHHHHHHHHHhcC-ccceEEEecCCcceEEEec--ccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhH Confidence 011222345555554 345667774 567776643 4456778888888888876554432111222335567788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cH-------HHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 208 SFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQ-------PVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 208 ~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~-------~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) .+.-+.+++.....-..+-+.|+..|..-=||...+--.|+|...-+ ++ ++.++.++.+++.|++.+ T Consensus 417 rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~----- 491 (695) T protein:vir:36 417 RVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRP----- 491 (695) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCH----- Confidence 88888888877654444334466666555566654434566654322 22 345677788999998764 Q ss_pred HHHHHHhCCCCCCC---------------ccccccccccccCCccccccc-----------cccccccCCcccCccccch Q lcl|Aclame:pro 280 KDLRARYGLPAPAE---------------RDDGADAAAAKAAGRRRAKRL-----------PGQRQGAALPSRSPRADPP 333 (355) Q Consensus 280 ~~~~e~~glp~~~~---------------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 333 (355) +.+|+++.-.+... +++.....+...........+ |+....-......+++... T Consensus 492 ~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~ 571 (695) T protein:vir:36 492 DQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQ 571 (695) T ss_pred HHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCcccccccCCCcccccccccCccccCCC Confidence 46777754421110 000000000000000000000 1111000000000000000 Q ss_pred hH--HHHH---hHh-----hhchHHhhhcCCC Q lcl|Aclame:pro 334 RR--RGPL---RRR-----PRHPAHRRCAPDG 355 (355) Q Consensus 334 ~~--~~~~---~~~-----~~~~~~~~~~~~~ 355 (355) .. .... ... ...++..=..|-| T Consensus 572 ~~~~~aag~v~~~~g~vLl~kr~~g~W~lPgG 603 (695) T protein:vir:36 572 DAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAG 603 (695) T ss_pred CccceeeEEEEEeCCEEEEEEecCCCccCCcc Confidence 00 0000 000 0000001111222 No 241 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=76.88 E-value=0.13 Score=25.43 Aligned_cols=284 Identities=7% Similarity=-0.021 Sum_probs=110.1 Q ss_pred CeEEEEeeeC-------------------------CEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCC Q lcl|Aclame:pro 1 MFEQVYRIEN-------------------------GRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPV 55 (355) Q Consensus 1 V~Eivw~~~~-------------------------g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~ 55 (355) |-+++++.+- ..+.+---..|++..+..+..+.++.... + .+ +.....+| T Consensus 173 v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~v~~~~~~~~~~~~~~d~~~~~-~-~s--~~~~~e~P- 247 (516) T protein:vir:10 173 LLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTHAKYLGEGFWELKQSADDIPVG-K-VS--KIKSEKLP- 247 (516) T ss_pred eEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEEEEecCCCceEEEEeeCceeec-c-cc--ccccccCC- Confidence 3333332110 00000000011111111111222222111 1 11 11122344 Q ss_pred ccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 56 DRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGL 135 (355) Q Consensus 56 ~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~ 135 (355) |++.|+...+|+.||.|...-+.....--+...+.-+.+++.-.-| |+...+.+... T Consensus 248 --~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~~~-~~lv~p~g~~~-------------------- 304 (516) T protein:vir:10 248 --FIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMADI-KYLIRPGAQTD-------------------- 304 (516) T ss_pred --eeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCC-CcccCcccccc-------------------- Confidence 5999999999999999999999999988888888888888864333 33332222110 Q ss_pred HHHHHHhcCCceeEEccCC-ceEEEeccCCCcccH---HHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 136 QLAKEFRAGEAAGGYIPHG-ANFTLTGVQGKLPEM---DGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 136 ~~~~~~~~G~~~~~v~p~~-~~ie~~~~~g~~~~~---~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) ..++..|..+++ +|.. ..|..+.. ++..+| ...|+.+...|+.+++...+.... +...-+.||+....+ T Consensus 305 --~~~l~~~~~g~~-~~g~~~~v~~~q~-~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~rd---~~rvTAtEV~~r~~E 377 (516) T protein:vir:10 305 --VDHFVNSGTGEV-VTGVEEDIHIVQL-GKYADLTPISAVLEVYTRRIGVVFMMETMTRRD---AERVTAVEIQRDALE 377 (516) T ss_pred --hhhhccCCCcee-ecCCcccceeeec-CcccchHHHHHHHHHHHHHHHHHHhhhhhhccC---CccccHHHHHHHHHH Confidence 112222333334 4433 34555442 333344 578999999999999987665421 122333455433222 Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccccEEEec--CCCc--------cHHHHHHHHHHHHhC-CCcc--c Q lcl|Aclame:pro 212 G---SLNAVMKHIADVTQQHVVEDLVDQNW-GPEEPAPRLVPA--QLGK--------EQPVTAEAIRALVEC-GAFT--A 274 (355) Q Consensus 212 ~---~~~ad~~~i~~~ln~~li~~l~~lNf-~~~~~~P~~~~~--~~~~--------d~~~~ae~~~~l~~~-G~~~--~ 274 (355) . +---.-+ |+..++-+|+..-+ +--.+.|.--.. .+.. +...+...++.+..+ ++.+ . T Consensus 378 ~~~~LGpv~~r-----l~~Ell~Pli~r~~~~~~p~~P~~lv~~~~v~~i~~L~raq~~~~i~~~~q~i~~~~q~~p~v~ 452 (516) T protein:vir:10 378 IEQNMGGVYSL-----FATTMQSPVAMWGLLEAGDSFTSDLVDPVIITGIEALGRMAELDKLANFAQYMSLPLQWPEPVL 452 (516) T ss_pred HHHHhhhHHHH-----HHHHHHHHHHHHHHHhhCCCCChhhcCcceehhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH Confidence 2 1111111 12223333322211 111122221111 0110 111111111211111 1111 0 Q ss_pred ch----hhHHHHHHHhCCCCCCCc-cccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHh Q lcl|Aclame:pro 275 DP----ELEKDLRARYGLPAPAER-DDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHR 349 (355) Q Consensus 275 ~~----~~~~~~~e~~glp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (355) +. ...+++.+.+|+|..--. ++.+........ ........+...- T Consensus 453 d~id~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~------------------------------~~q~~~~~~~~~~ 502 (516) T protein:vir:10 453 AAVKWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQM------------------------------QAQQAQMLEEGVA 502 (516) T ss_pred hhcCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHH------------------------------HHHHHHHHHHHhh Confidence 11 114667788888742111 111111000000 0000000000000 Q ss_pred hhcCCC Q lcl|Aclame:pro 350 RCAPDG 355 (355) Q Consensus 350 ~~~~~~ 355 (355) .+.+| T Consensus 503 -~~~~~ 507 (516) T protein:vir:10 503 -KAVPG 507 (516) T ss_pred -hcccc Confidence 01122 No 242 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=76.30 E-value=0.14 Score=25.32 Aligned_cols=328 Identities=13% Similarity=0.063 Sum_probs=123.0 Q ss_pred CeEEEEeee--CC----EE----------EEeeeeecCccceee--eee-c----CCCceEEEeecCCCCCCceeeCCcc Q lcl|Aclame:pro 1 MFEQVYRIE--NG----RA----------RLGKLAWRPPRTISR--FDV-A----PDGGLVAIEQWGVFGKATVRIPVDR 57 (355) Q Consensus 1 V~Eivw~~~--~g----~~----------~~~~l~~r~~~~i~~--f~~-~----~~g~l~~~~q~~~~g~~~~~ip~~k 57 (355) ..=++...+ +. -+ .++.|...+|.++.= ++. + +.++-.++. .. +..+-..+ T Consensus 198 Ga~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~---V~---G~~IH~SR 271 (694) T protein:vir:10 198 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW---MI---GTEVHATR 271 (694) T ss_pred ceEEEEEeecCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE---Ee---ceEEeeee Confidence 111111111 10 00 011233333221110 000 0 001100100 00 11222333 Q ss_pred EEEEecCC------CCCccccchhHHHHHHHHH---HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 58 LVVFVNER------EGANWLGQSLLRQAYKNWL---LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 58 ~i~~~~~~------~~~~p~G~~ll~~~~~~~~---~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) ++.+.-.. ..-|.+|.|+...++..+. -.+..... .+-++ -+.+++. + .+..-... .+ T Consensus 272 L~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~---Li~~~--~v~~lk~--d-la~~L~~g-~~---- 338 (694) T protein:vir:10 272 LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD---IVKQF--SVSGILM--D-LAQALMPG-AN---- 338 (694) T ss_pred EEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHH---HHHhh--hhHHHHH--H-HHHhhcCh-hH---- Confidence 33332111 2336779999888876532 22222221 11111 1111110 0 00000000 00 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccC-CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPH-GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA 207 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~-~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~ 207 (355) ..+....+++..+++ +....++.+ +.+++.++. +......+|...-.+||-+.--+..-.=+.+-.|=.|.|+.-. T Consensus 339 ~~l~~R~eli~~~Rs-n~G~~llDk~~Eefeq~st--slSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~ 415 (694) T protein:vir:10 339 VDLSMRAELINRYRD-NRNILFLDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEI 415 (694) T ss_pred HHHHHHHHHHHHhcC-ccceEEEecCCcceEEEec--ccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhH Confidence 011222345555554 445667774 567776643 4456778888888888876544432111222335567788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cH-------HHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 208 SFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQ-------PVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 208 ~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~-------~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) .+.-+.+++.....-..+-+.|+..|..-=||...+--.|+|...-+ ++ ++.|+.++.+++.|++.+ T Consensus 416 rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~----- 490 (694) T protein:vir:10 416 RVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRP----- 490 (694) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCH----- Confidence 88888888877654444334466666555576654434566654322 22 345677788999998764 Q ss_pred HHHHHHhCCCCCC---------------CccccccccccccCCcccccc-----------ccccccccCCcccCccccch Q lcl|Aclame:pro 280 KDLRARYGLPAPA---------------ERDDGADAAAAKAAGRRRAKR-----------LPGQRQGAALPSRSPRADPP 333 (355) Q Consensus 280 ~~~~e~~glp~~~---------------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 333 (355) +.+|+++.-.+.. .+++.....+........... .|++...-......+++... T Consensus 491 ~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~ 570 (694) T protein:vir:10 491 DQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQ 570 (694) T ss_pred HHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCcccccccCCCcccccccccCccccCCC Confidence 4677775442111 000000000000000000000 01111100000000000000 Q ss_pred hH--HHHH---hHh-----hhchHHhhhcCCC Q lcl|Aclame:pro 334 RR--RGPL---RRR-----PRHPAHRRCAPDG 355 (355) Q Consensus 334 ~~--~~~~---~~~-----~~~~~~~~~~~~~ 355 (355) .. .... ... ...++..=..|-| T Consensus 571 ~~~~~~ag~v~~~~g~vLl~kr~~g~W~lPgG 602 (694) T protein:vir:10 571 DAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAG 602 (694) T ss_pred CccceeeEEEEEeCCEEEEEEecCCCccCCcc Confidence 00 0000 000 0000001111222 No 243 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=75.66 E-value=0.14 Score=25.20 Aligned_cols=292 Identities=11% Similarity=0.053 Sum_probs=111.7 Q ss_pred CeEEE----EeeeC-C-EEEEeeeeec---C-ccceee--eeecCC---CceEEEeecCC-CC------CCceeeCCccE Q lcl|Aclame:pro 1 MFEQV----YRIEN-G-RARLGKLAWR---P-PRTISR--FDVAPD---GGLVAIEQWGV-FG------KATVRIPVDRL 58 (355) Q Consensus 1 V~Eiv----w~~~~-g-~~~~~~l~~r---~-~~~i~~--f~~~~~---g~l~~~~q~~~-~g------~~~~~ip~~k~ 58 (355) +.|++ |...+ + ..+...+.++ + +.+|.. |+-+.. |..+.+..-+. .+ ..+++-| -| T Consensus 163 ~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p--~f 240 (505) T protein:vir:79 163 VNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHP--LF 240 (505) T ss_pred eEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCcc--eE Confidence 22222 11110 0 0000011100 0 111111 111000 11110000000 00 0111112 23 Q ss_pred EEEe----cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec----CC-CCccccchhhHHHHHHH Q lcl|Aclame:pro 59 VVFV----NEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGA----PL-PEAIARDTARAEQWLND 129 (355) Q Consensus 59 i~~~----~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~----~~-~~~~~~d~~~~e~~~~~ 129 (355) .+++ ++....+|+|.|.+..+....-.-...+..|..-.+. | -..+.... .. ............ T Consensus 241 ~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g-~~~i~v~~~~l~~~~~~~~~~~~~~~~----- 313 (505) T protein:vir:79 241 AFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKK-G-QRRLIVPAEWLKTGSSYGGQASETHPP----- 313 (505) T ss_pred EEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh-c-ccceeechHHhcccCCCCccccccccc----- Confidence 3333 2344578999999999987766655555556555552 1 12222200 00 000000000000 Q ss_pred HHHHHHHHHHHHhcCCceeEEcc---CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHH Q lcl|Aclame:pro 130 QKEEGLQLAKEFRAGEAAGGYIP---HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTF 206 (355) Q Consensus 130 ~~~~l~~~~~~~~~G~~~~~v~p---~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh 206 (355) + +......+..+. .+..|+.+...-....|...++.+=++|+..+.-..-|.+-. +.|...+-++. T Consensus 314 -------~---fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~-~~~~~TAtei~ 382 (505) T protein:vir:79 314 -------M---FDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTS-PSGIQTATEVV 382 (505) T ss_pred -------C---CCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCC-ccccchHHHHH Confidence 0 000000011110 112244444333334566666666666665553222222222 22333233442 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C--C-------Cc--ccccEEEecCCC-ccHHHHHHHHHHHHhC Q lcl|Aclame:pro 207 --ASFFTGSLNAVMKHIADVTQQHVVEDLVDQN---W--G-------PE--EPAPRLVPAQLG-KEQPVTAEAIRALVEC 269 (355) Q Consensus 207 --~~v~~~~~~ad~~~i~~~ln~~li~~l~~lN---f--~-------~~--~~~P~~~~~~~~-~d~~~~ae~~~~l~~~ 269 (355) ..-....+..-.+.+...|. +|+..++.+. + . .. ..-+.|.|+..- .|..+.++...+++.+ T Consensus 383 s~~~~l~~t~~~~~~~~~~al~-~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~ 461 (505) T protein:vir:79 383 TNNSQTYQTRSSYITQVEKTIK-ALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQA 461 (505) T ss_pred HHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHc Confidence 22234445566666777774 5777665431 1 1 11 112356676543 4667778888999999 Q ss_pred CCcccchhhHHHHHHHhCCCCCCCccccccccccccCCccccccccccccccC Q lcl|Aclame:pro 270 GAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAA 322 (355) Q Consensus 270 G~~~~~~~~~~~~~e~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (355) |+... +.++.+.+|+++.+-.++...-...... ..+. ....+++ T Consensus 462 Gi~s~----e~~l~~~~~~~eeea~~el~ri~~E~~~----~~p~-~~~~gg~ 505 (505) T protein:vir:79 462 QVMPK----KQFLMRNYGLDEEEADEWLAQIDAENST----AEPE-FNQFGGD 505 (505) T ss_pred CCCCH----HHHHHhcCCCChHHHHHHHHHHHHhccc----cCCC-chhccCC Confidence 97542 5788888998653222111111111110 0000 1111112 No 244 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=74.55 E-value=0.16 Score=24.99 Aligned_cols=327 Identities=13% Similarity=0.047 Sum_probs=124.4 Q ss_pred CeEEEEeee--CC----EE----------EEeeeeecCccceee--eee-c----CCCceEEEeecCCCCCCceeeCCcc Q lcl|Aclame:pro 1 MFEQVYRIE--NG----RA----------RLGKLAWRPPRTISR--FDV-A----PDGGLVAIEQWGVFGKATVRIPVDR 57 (355) Q Consensus 1 V~Eivw~~~--~g----~~----------~~~~l~~r~~~~i~~--f~~-~----~~g~l~~~~q~~~~g~~~~~ip~~k 57 (355) ..=++...+ +. -+ .++.|...+|.++.= ++. + +.++-.++. .. +..+-..+ T Consensus 199 Ga~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~---V~---G~kIH~SR 272 (695) T protein:vir:78 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW---MI---GTEVHATR 272 (695) T ss_pred ceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEE---Ee---ceEEeeee Confidence 111111111 00 00 011233333221110 000 0 001100110 00 11222333 Q ss_pred EEEEecCC------CCCccccchhHHHHHHHHH---HHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHH Q lcl|Aclame:pro 58 LVVFVNER------EGANWLGQSLLRQAYKNWL---LKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLN 128 (355) Q Consensus 58 ~i~~~~~~------~~~~p~G~~ll~~~~~~~~---~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~ 128 (355) ++.+.-.. ..-|.+|.|+...++..+. -.+..... .+-++ -+.+++. + .+..-... .+ . T Consensus 273 L~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~---Li~~~--~v~~lk~--d-la~~L~~g-~~---~ 340 (695) T protein:vir:78 273 LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD---IVKQF--SVSGILM--D-LAQALMPG-AN---V 340 (695) T ss_pred EEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHH---HHHhh--hhHHHHH--H-HHHhhcCh-hH---H Confidence 33332111 2346779999888876532 22222221 11111 1111110 0 00000000 00 0 Q ss_pred HHHHHHHHHHHHHhcCCceeEEccC-CceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHH Q lcl|Aclame:pro 129 DQKEEGLQLAKEFRAGEAAGGYIPH-GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFA 207 (355) Q Consensus 129 ~~~~~l~~~~~~~~~G~~~~~v~p~-~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~ 207 (355) .+....+++..+++ +....++.+ +.+++.++. +......+|...-.+||-+.--+..-.=+.+-.|=.|.|+.-. T Consensus 341 -~l~~R~eli~~~Rs-n~G~~llDk~~Eefeq~st--slSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~ 416 (695) T protein:vir:78 341 -DLSMRAELINRYRD-NRNILFLDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEI 416 (695) T ss_pred -HHHHHHHHHHHhcC-ccceEEEecCCcceEEEec--ccCCHHHHHHHHHHHHHhhhcCchhhhhccCCccccccchhhH Confidence 11222345555554 445667774 567776643 4456778888888888876554432111222335567788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccEEEecCCCc-cH-------HHHHHHHHHHHhCCCcccchhhH Q lcl|Aclame:pro 208 SFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-EQ-------PVTAEAIRALVECGAFTADPELE 279 (355) Q Consensus 208 ~v~~~~~~ad~~~i~~~ln~~li~~l~~lNf~~~~~~P~~~~~~~~~-d~-------~~~ae~~~~l~~~G~~~~~~~~~ 279 (355) .+.-+.+++.....-..+-+.|+..|..-=||...+--.|+|...-+ ++ ++.|+.++.+++.|++.+ T Consensus 417 rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~----- 491 (695) T protein:vir:78 417 RVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRP----- 491 (695) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCH----- Confidence 88888888877654444334466666555566654334556654322 22 345677788999998764 Q ss_pred HHHHHHhCCCCCC---------------CccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhh Q lcl|Aclame:pro 280 KDLRARYGLPAPA---------------ERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPR 344 (355) Q Consensus 280 ~~~~e~~glp~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (355) +.+|+++.-.+.. .+++.....+...........++... ...+.+.+|....-......++... T Consensus 492 ~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ag~ 570 (695) T protein:vir:78 492 DQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGG-ARAGATAPPTVANVNANVKPREAGA 570 (695) T ss_pred HHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCC-CCCCCCCCCceeeeeccccccccCC Confidence 4677775442111 00000000000001011111111110 0111111111111111000000000 Q ss_pred chH-----HhhhcCCC Q lcl|Aclame:pro 345 HPA-----HRRCAPDG 355 (355) Q Consensus 345 ~~~-----~~~~~~~~ 355 (355) ... .-....|| T Consensus 571 ~~~~~~aag~v~~~~g 586 (695) T protein:vir:78 571 QDAAMRAAGAVYVVDG 586 (695) T ss_pred CCcccceeEEEEEeCC Confidence 000 00001133 No 245 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=74.09 E-value=0.16 Score=24.91 Aligned_cols=292 Identities=10% Similarity=0.038 Sum_probs=117.9 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |.+.|+.+.+.... ....++--.. .|+..-+|..+.... ...| ...+| |++.|+....|+.||.|....++ T Consensus 205 v~~~v~pr~~~~~~--~~~~~~~~~~-s~~~e~~g~~v~~~~-~e~g--~~~~P---~i~~Rw~~~~ge~YGrgp~~~~l 275 (542) T protein:vir:78 205 VAQGKGGRNDAEVF--TCCKLVDGQH-RWHQECDGKEIKGSR-SSSP--LKHSP---WLPLRFNVVDGESYGRGRVEEFF 275 (542) T ss_pred EEEEeecccCCccc--cccccCCCeE-EEEEEeccccccccc-cccc--cccCC---ceeeeeeecCCCccccchHHHHH Confidence 44444443332221 1111221111 122233333221000 0111 12344 48899999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCCceEEEe Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~ie~~ 160 (355) ....--+...+.-+.++++-.-| |+...+.+... . .++..|..++++-....++..+ T Consensus 276 ~D~k~L~~l~~~~l~~~~~a~~p-p~lv~~~g~~~------------------~----~~~~~~~~g~iv~g~~~~v~~~ 332 (542) T protein:vir:78 276 GDLSSLDALTRSLIEGSAAAAKV-VFMVSPSATTK------------------P----QSLARAGTGAIIQGRAEDVSVV 332 (542) T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-ceeeccccccc------------------h----hhcccCCCceeecCCccceeee Confidence 99999998989999999986544 44332221110 0 1121133344444444566666 Q ss_pred cc--CCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- Q lcl|Aclame:pro 161 GV--QGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD--- 235 (355) Q Consensus 161 ~~--~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~--- 235 (355) .. .++...-...|+.+...|.++++.... . ++...-+.||+....+.. .... =+-..|+..++-+|+. T Consensus 333 ~~~~~~~~~~~~~~i~~~~~rI~~aFl~~~~----~-d~~rvTAtEV~~r~~E~~-~~LG-~v~~rl~~E~L~Pli~R~~ 405 (542) T protein:vir:78 333 QANKGADFRTVQEMIRDLSQRISDAFLILNV----R-QSERTTATEVREVQMELD-RQLS-GIYGSLTVELLTPYLNRKL 405 (542) T ss_pred ecccccchhHHHHHHHHHHHHHHHHhccccc----C-CcccccHHHHHHHHHHHH-HHhh-HHHHHHHHHHHHHHHHHHH Confidence 42 223333467899999999999875432 1 222233455544332221 1111 1111122222222222 Q ss_pred ---hCCCCccccc----EEEecC-CC-----ccHHHHHHHHHHHHhC-CCcc-----cchhhHHHHHHHhCCCCC---CC Q lcl|Aclame:pro 236 ---QNWGPEEPAP----RLVPAQ-LG-----KEQPVTAEAIRALVEC-GAFT-----ADPELEKDLRARYGLPAP---AE 293 (355) Q Consensus 236 ---lNf~~~~~~P----~~~~~~-~~-----~d~~~~ae~~~~l~~~-G~~~-----~~~~~~~~~~e~~glp~~---~~ 293 (355) ...+--.+.| ++.|.. .+ .+...+...++.+.++ |-.. -.+...+++.+.+|+|.. .. T Consensus 406 ~il~r~g~lP~~p~~lv~~~~~s~La~~~r~~~~~~l~~~~~~i~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s 485 (542) T protein:vir:78 406 HLMQRSKQLPSLPKGLVMPTVVAGLGGVGRGEDRAALIEFMQTVGQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKS 485 (542) T ss_pred HHHHhcCCCCCCchhceeeeeechHHHHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCC Confidence 1111111112 222211 10 1112222233333222 2111 112235677888999842 11 Q ss_pred ccccccccccccCCc------------cccccccccccccCCcccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 294 RDDGADAAAAKAAGR------------RRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 294 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) .|+........+... ...+.+........+ +-+..|.| T Consensus 486 ~e~~~~~~~q~q~~~~~~al~~~a~~~a~~~~~~~~~~~~~a------------------------~~~~~~~~ 535 (542) T protein:vir:78 486 PETMANEAQQAQQQQMTASLMGQAGQLAKSPIGEKMMQQINA------------------------PGQEAPAG 535 (542) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhcCC------------------------CCcCCCCC Confidence 221111100000000 000000000000000 00111111 No 246 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=61.77 E-value=0.35 Score=23.10 Aligned_cols=298 Identities=10% Similarity=0.039 Sum_probs=116.8 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccchhHHHHH Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ll~~~~ 80 (355) |...|+.+.+. .+.+...++ ..+..+.+..++..+ ++. .|. ...| |++.|+....|+.||.|....++ T Consensus 217 v~~~V~pr~~~--~~~~~~~~~-~pf~sv~~e~~~~~i-l~e---sg~--~e~P---~~~~Rw~~~~ge~YGrgp~~~~l 284 (549) T protein:vir:10 217 FYHAVEPRADR--DPRKLDGRN-MQFASYWLDEGRDRI-VQN---SGF--RTFP---FAIGRFYVGTDDVYGGSPAYDAM 284 (549) T ss_pred EEEEeecCCCC--Ccccccccc-CceEEEEEEecCCEe-ecc---CCc--ccCC---cceeeeeecCCCccccchHHHHH Confidence 33444332221 122221111 001122233333322 221 122 2344 58899999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEc-cCC-ceEE Q lcl|Aclame:pro 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYI-PHG-ANFT 158 (355) Q Consensus 81 ~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~-p~~-~~ie 158 (355) ....--+...+.-+..+++-.-| |+...+.+.... . ++..|...+++. +.+ ..+. T Consensus 285 ~D~k~L~~l~~~~l~~~~~~~~p-~~~v~~~g~~~~------------------~----~l~pgg~~~~~~~~~~~~~~~ 341 (549) T protein:vir:10 285 PDVRMANDMAKTNIRGAQKLVDP-PLLANEDGVLDG------------------F----DLRSGALNWGGLNDKGEEMVK 341 (549) T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-ceeecccccccc------------------c----eeccCCccccccCCCCcccee Confidence 99999888888899999986543 443322221110 0 111132222222 222 2334 Q ss_pred EeccCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HH Q lcl|Aclame:pro 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGS--LNAVMKHIADVTQQHVV----ED 232 (355) Q Consensus 159 ~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~--~~ad~~~i~~~ln~~li----~~ 232 (355) -+...++...-...|+.+...|..+++...+.+.. ++...-+.||+....+.. +-.....+...|-.-|| .. T Consensus 342 pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~~~--~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~i 419 (549) T protein:vir:10 342 PLLTGKQAQIGIEFAQDTRQTINQWFYVTLFQILV--DSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDI 419 (549) T ss_pred eeccccchhHHHHHHHHHHHHHHHHHhhhhhhhhc--CCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH Confidence 34333333345677999999999999876543321 123344455544433321 11111111111111111 11 Q ss_pred HHHhC-CCCc--ccc-c--EEEecCCCc--------cHHHH---HHHHHHHHhCCCc----ccchhhHHHHHHHhCCCCC Q lcl|Aclame:pro 233 LVDQN-WGPE--EPA-P--RLVPAQLGK--------EQPVT---AEAIRALVECGAF----TADPELEKDLRARYGLPAP 291 (355) Q Consensus 233 l~~lN-f~~~--~~~-P--~~~~~~~~~--------d~~~~---ae~~~~l~~~G~~----~~~~~~~~~~~e~~glp~~ 291 (355) |.+.+ +++. ... | .+.+..+.. +.... .+.+..|.++|-. +-.+...+++.+.+|+|.. T Consensus 420 l~r~g~lP~~p~~l~~~~~~~~i~yis~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~ 499 (549) T protein:vir:10 420 LAEAGQLPDMPQELIDAGADVDVEYDSPLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVE 499 (549) T ss_pred HHhcCCCCCCChhhhcCCceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCcc Confidence 11211 1210 000 1 122222211 11111 1222222233311 1112346678899999852 Q ss_pred C--Ccccccccccc---ccCCcc-ccccccccccccCCcccCccccchhHHHHHhHhhhchHHhh Q lcl|Aclame:pro 292 A--ERDDGADAAAA---KAAGRR-RAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRR 350 (355) Q Consensus 292 ~--~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (355) - .++++ ..... .+.+.. .....+. + -...+.....++....+|- T Consensus 500 ~irs~eev-~~~r~~~~~qqq~~~~~~~a~~-------------a-~~~a~~~~~~~ta~~~~~~ 549 (549) T protein:vir:10 500 AMSTDEEL-QAQQAAEAQAAQMQQMLAAAPV-------------A-AGAIKDLSDAQTAAQTARV 549 (549) T ss_pred ccCCHHHH-HHHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHhhhhhcCCCcccCC Confidence 1 11111 11000 000000 0000000 0 0000000011111111111 No 247 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=45.39 E-value=0.77 Score=21.20 Aligned_cols=310 Identities=9% Similarity=0.047 Sum_probs=115.2 Q ss_pred CeEE---EEeee---CCEEEEeeeeecCccceeeeeecCCCceEEEeecCCCCCCceeeCCccEEEEecCCCCCccccch Q lcl|Aclame:pro 1 MFEQ---VYRIE---NGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQS 74 (355) Q Consensus 1 V~Ei---vw~~~---~g~~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ip~~k~i~~~~~~~~~~p~G~~ 74 (355) .+++ +..++ ...+..-....++..+.. |...-+|....-+- +..|. ..+| |++.|+....|+.||.| T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~-~~~e~~~~~v~~~l-~e~g~--~e~P---~i~~Rw~~~~ge~YGrg 273 (555) T protein:vir:17 201 PKMGVTAPGGRDKGKSNDALVYTYVCRKDGQVK-WHQECDGKVIPGSN-SSAPY--THNP---WIPLRFNIVDGEAYGRG 273 (555) T ss_pred hhhhhhhhcccccCCCcceeEeecccccCCeeE-EEEecCceeccccc-cccCc--ccCC---eeeeeeeecCCCccccc Confidence 1111 10000 011111111222222222 22223333221000 11121 1234 58899999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcCCceeEEccCC Q lcl|Aclame:pro 75 LLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHG 154 (355) Q Consensus 75 ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~ 154 (355) ....++....--+...+.-+.++++-.-| |+...+.+.... .++.-|..++++-... T Consensus 274 p~~~~l~D~k~L~~l~~~~l~~~~~~~~p-p~lv~~~g~~~~----------------------~~l~~~~~g~v~~g~~ 330 (555) T protein:vir:17 274 RVEEFMGDLKSLEALSQAMVEGSAASAKV-VFMVSPSATTKP----------------------QNLALAANGAIIQGRP 330 (555) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeccccccCc----------------------ceeecCCCceeecCCc Confidence 99999999999888888899999986544 444333222111 1122233333332223 Q ss_pred ceEEEeccCCCccc---HHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 ANFTLTGVQGKLPE---MDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVE 231 (355) Q Consensus 155 ~~ie~~~~~g~~~~---~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~~~~~ad~~~i~~~ln~~li~ 231 (355) ..|..+.. ++..+ -...|+.+...|..+++.- +. .+++..-..||+....+.. ....- +-..|+..++- T Consensus 331 ~~v~~~~~-~~~~~~~~~~~~i~~~~~~I~~aFm~~--~~---~d~~r~TAtEV~~r~~E~~-~~LGp-v~~rl~~E~L~ 402 (555) T protein:vir:17 331 DDVSVVQA-NKAADFRTVLEMIQKLEQRISDAFLML--QV---RQSERTTATEVQATVQELN-EQIGG-IYSNLTTELLQ 402 (555) T ss_pred ccceeeec-cccchhhHHHHHHHHHHHHHHHHHhhc--CC---CCcccchHHHHHHHHHHHH-HHHhH-HHHHHHHHHHH Confidence 34555542 23333 3577888999999988752 21 1223333444443332221 11111 11111222222 Q ss_pred HHHH--------hC-CCCc--c-cccEEEecCC----CccHHHHHHHHHHHHhCCCc------ccchhhHHHHHHHhCCC Q lcl|Aclame:pro 232 DLVD--------QN-WGPE--E-PAPRLVPAQL----GKEQPVTAEAIRALVECGAF------TADPELEKDLRARYGLP 289 (355) Q Consensus 232 ~l~~--------lN-f~~~--~-~~P~~~~~~~----~~d~~~~ae~~~~l~~~G~~------~~~~~~~~~~~e~~glp 289 (355) +|+. .+ +++. . .-|.+..... ..+...+...++.+.+.+.. +-.+...+.+.+.+|++ T Consensus 403 Pli~R~~~il~r~g~lP~~p~~~v~~~i~~~l~~l~r~~~~~~l~~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~ 482 (555) T protein:vir:17 403 PYLARKLHLLQKQRKLPQLPKDLVQPTVVAGLWGVGRGQDKQQLMEFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGID 482 (555) T ss_pred HHHHHHHHHHHhCCCCCCCCHhhhccceeehHHHHHHHHHHHHHHHHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCC Confidence 2222 12 2211 0 0112221100 01222233444444444321 10112346678889994 Q ss_pred CC--CCcccccccccccc-------CCccccccccccccccCC-cccCccccchhHHHHHhHhhhchHHhhhcCCC Q lcl|Aclame:pro 290 AP--AERDDGADAAAAKA-------AGRRRAKRLPGQRQGAAL-PSRSPRADPPRRRGPLRRRPRHPAHRRCAPDG 355 (355) Q Consensus 290 ~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355) +. ...++.+....... ....++...-+....... ..-.+........++....+.+ |+| T Consensus 483 p~~ivrs~eev~~~rq~~~~~~~q~~~~~qa~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~-------~~~ 551 (555) T protein:vir:17 483 TLQLINSPETMKQLGDQQKQDMVQASLINQAGQLAKTPMAEQAMQLIQQQQEGAQDAGAAESETSS-------AEA 551 (555) T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhccccchhhhhHHHHHHhhcCC-------ccc Confidence 21 11111111111000 000000000000000000 0000001111111211111111 333 No 248 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=30.60 E-value=1.6 Score=19.52 Aligned_cols=295 Identities=10% Similarity=0.063 Sum_probs=114.9 Q ss_pred CeEEEEeeeC------------------------CEEEEeeeeecC----ccceeeeeecCCCceEEEeecCCCCCCcee Q lcl|Aclame:pro 1 MFEQVYRIEN------------------------GRARLGKLAWRP----PRTISRFDVAPDGGLVAIEQWGVFGKATVR 52 (355) Q Consensus 1 V~Eivw~~~~------------------------g~~~~~~l~~r~----~~~i~~f~~~~~g~l~~~~q~~~~g~~~~~ 52 (355) |-+++.+..- .......+.+++ |.+..+++ -+|..++ . .+ +..... T Consensus 163 vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~sv~~e--~dg~~i~-~-~~--~~~~~e 236 (510) T protein:vir:78 163 WMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVDLYTHVQRRKGTAMDYAEMYHE--IDGVRVG-E-TG--RWPIHL 236 (510) T ss_pred eeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEEEEEEEEeecCCCCcEEEEEEE--ecCeeec-c-cc--cccccc Confidence 2222221100 000000011111 11111222 2332221 1 11 111122 Q ss_pred eCCccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHH Q lcl|Aclame:pro 53 IPVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKE 132 (355) Q Consensus 53 ip~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~ 132 (355) +| |++.|+....|+.||.|....++....--+...+.-+.++++-.-| |+...+.+... T Consensus 237 ~P---~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~-~~lv~p~g~~~----------------- 295 (510) T protein:vir:78 237 CP---YIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEV-LNLVDEAKGAV----------------- 295 (510) T ss_pred CC---eeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcccCCccccc----------------- Confidence 34 5889999999999999999999999988888888888888875444 33322211110 Q ss_pred HHHHHHHHHhcCCceeEEccCCc-eEEEeccC--CCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHH Q lcl|Aclame:pro 133 EGLQLAKEFRAGEAAGGYIPHGA-NFTLTGVQ--GKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASF 209 (355) Q Consensus 133 ~l~~~~~~~~~G~~~~~v~p~~~-~ie~~~~~--g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v 209 (355) ..++..|..+ .++|... +|..+... ++...-...|+.+...|..+++.. |.. .+++..-+.||+... T Consensus 296 -----~~~l~~~~~g-~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF~~~-l~~---~~~~rvTAtEV~~r~ 365 (510) T protein:vir:78 296 -----VDDYQDAEMG-DYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMYG-ANQ---RDAERVTAEEVRITA 365 (510) T ss_pred -----hhhhccCCCc-eeecCCcccccccccCcccchHHHHHHHHHHHHHHHHHHhhc-ccc---CCCCCcCHHHHHHHH Confidence 1122223333 3455443 35554321 222334578999999999998753 322 122222445555443 Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHhC--CCCcccccEE----EecCCC-----ccHHHHHHHHHHHHhCCCcc--- Q lcl|Aclame:pro 210 FTG--SLNAVMKHIADVTQQHVVEDLVDQN--WGPEEPAPRL----VPAQLG-----KEQPVTAEAIRALVECGAFT--- 273 (355) Q Consensus 210 ~~~--~~~ad~~~i~~~ln~~li~~l~~lN--f~~~~~~P~~----~~~~~~-----~d~~~~ae~~~~l~~~G~~~--- 273 (355) .+. .+-.-...+...+..-||.+.+.+= .+-..+.|.. ...... .+........+.+...|... T Consensus 366 ~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~is~Laraq~~~~l~~~~q~l~~~~~~~q~~ 445 (510) T protein:vir:78 366 EEAENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETGLPALSRSAAVQSMLNASQVIAGLAPIAQLD 445 (510) T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccceeeecccHHHHHHHHHHHHHHHHHHHHhcChhhhh Confidence 222 1222222222222223333322111 1100111111 111111 11112222333333333211 Q ss_pred ---cchhhHHHHHHHhCCCCC-C-CccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHH Q lcl|Aclame:pro 274 ---ADPELEKDLRARYGLPAP-A-ERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAH 348 (355) Q Consensus 274 ---~~~~~~~~~~e~~glp~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (355) -.+...+++.+.+|+++. - ..++.+....+... .......+..........+ T Consensus 446 ~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~-----------------------~q~~~~~~~~~a~~~~~~~ 502 (510) T protein:vir:78 446 PRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEEQR-----------------------RQAAQAQAAQETLLEGASD 502 (510) T ss_pred hcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhhhh Confidence 012234567777787321 1 11111111110000 0000111111222333333 Q ss_pred hhhcCCC Q lcl|Aclame:pro 349 RRCAPDG 355 (355) Q Consensus 349 ~~~~~~~ 355 (355) --.++-| T Consensus 503 ~~~~~~g 509 (510) T protein:vir:78 503 MTNALAG 509 (510) T ss_pred hcccCCC Confidence 3333444 No 249 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=28.46 E-value=1.7 Score=19.26 Aligned_cols=314 Identities=13% Similarity=0.041 Sum_probs=114.4 Q ss_pred Ce--EE--EEee-eC---CE--------------------------EEEeeeeecCccceeeeeecCCCceEEEeecCCC Q lcl|Aclame:pro 1 MF--EQ--VYRI-EN---GR--------------------------ARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVF 46 (355) Q Consensus 1 V~--Ei--vw~~-~~---g~--------------------------~~~~~l~~r~~~~i~~f~~~~~g~l~~~~q~~~~ 46 (355) |+ ++ .|.- ++ +. |.+-++..|+..... |..-.++ ....+ .. T Consensus 165 ~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~wd~r~~~~~~-~~~~~~~-~~~~~---~d 239 (563) T protein:vir:74 165 FHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNWDDRGAISDE-QARRKEQ-VRSAQ---HD 239 (563) T ss_pred ceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccccccCccchh-hhcccch-hhhhh---hh Confidence 11 11 1211 00 01 222111112111110 0000011 00000 00 Q ss_pred C-CCceeeCCc--cEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhH Q lcl|Aclame:pro 47 G-KATVRIPVD--RLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARA 123 (355) Q Consensus 47 g-~~~~~ip~~--k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~ 123 (355) + .+.++.|.. -+++++..+..+..||.|.|..+.-...--+....+....++-.|.||.+..+.... |.... T Consensus 240 ~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl~~~~p~-----d~~~g 314 (563) T protein:vir:74 240 EEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVTNASAPV-----DPNTG 314 (563) T ss_pred chhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEecccccc-----ccccc Confidence 0 011122222 134566677889999999999999888887777888888888777777666543211 11100 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeEEccCCce---EEEeccCCCcccHHHHHHHHHH-HHHHHHhhhh---hccccCCc Q lcl|Aclame:pro 124 EQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGAN---FTLTGVQGKLPEMDGPIRYHDE-QIARAVLAHF---LTLGGDKS 196 (355) Q Consensus 124 e~~~~~~~~~l~~~~~~~~~G~~~~~v~p~~~~---ie~~~~~g~~~~~~~~i~~~d~-~Isk~ilgqt---lt~~~~~~ 196 (355) + +.. =|+ |-.+.+-++...+ ++.++..-+...++.=+++++. .|+..---+- -|.+.... T Consensus 315 ~---------~~~--w~v--gpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD~~~~ 381 (563) T protein:vir:74 315 E---------LTD--WNI--GPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVDVTSA 381 (563) T ss_pred c---------ccc--ccc--CCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeecccccccc Confidence 0 000 011 3223333443322 3333322222333333444433 3332211111 11121111 Q ss_pred cchhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhC--------CCCccccc-----EEEecCCCc-c Q lcl|Aclame:pro 197 TGSYALGDTFASFFTGS-------LNAVMKHIADVTQQHVVEDLVDQN--------WGPEEPAP-----RLVPAQLGK-E 255 (355) Q Consensus 197 ~GS~Al~~vh~~v~~~~-------~~ad~~~i~~~ln~~li~~l~~lN--------f~~~~~~P-----~~~~~~~~~-d 255 (355) -+++|| +++..-.... +.+-+++...-+.+.|++.+-.+- ||.. +.| .++|...-+ + T Consensus 382 ~SGiAL-eL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~-~~~~~~~v~ivf~p~~P~d 459 (563) T protein:vir:74 382 ESGISL-ELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASA-DLLNECSVVCIFADPMPVN 459 (563) T ss_pred cchhhh-hhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccccccccc-ccCCceEEEEEeCCCCCcc Confidence 122443 2333333332 233344444444455555544431 1211 222 345777666 4 Q ss_pred HHHHHHHHHHHHhCCCcccchhhHHHHHHHh---CCCCCCCcccccccc-----------cccc-CCccccccccccccc Q lcl|Aclame:pro 256 QPVTAEAIRALVECGAFTADPELEKDLRARY---GLPAPAERDDGADAA-----------AAKA-AGRRRAKRLPGQRQG 320 (355) Q Consensus 256 ~~~~ae~~~~l~~~G~~~~~~~~~~~~~e~~---glp~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~ 320 (355) .....+....|+.+|++.. .-..+++ |.|.|+-+.+..... +... +...++ .+.+.... T Consensus 460 ~~~vv~~~~tl~~aGiiSr-----etAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a-~~~~g~~~ 533 (563) T protein:vir:74 460 KTQVTQDTLLLQQAHLILR-----KMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEADASLGLSA-MDNGGAGE 533 (563) T ss_pred HHHHHHHHHHHHHcCchhH-----HHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhccCccccee-cccCCCCc Confidence 4566777778889997642 2222333 766655222211110 0000 000111 11111100 Q ss_pred cCCcccCccccchh-----HHHHHhHhhhchHHhhhcC Q lcl|Aclame:pro 321 AALPSRSPRADPPR-----RRGPLRRRPRHPAHRRCAP 353 (355) Q Consensus 321 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 353 (355) ... .....+-++. ....+.+-+.+ | T Consensus 534 ~~~-dd~g~p~~~~~~~~~~~~~~~~~~~~-------~ 563 (563) T protein:vir:74 534 QQF-DDQGNPIDQFGNPVEIPPDVTQVPLS-------P 563 (563) T ss_pred ccc-cccCCchhHcCCcccCCccccccCCC-------C Confidence 000 0000000100 00000111111 1 No 250 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=27.32 E-value=1.9 Score=19.11 Aligned_cols=297 Identities=9% Similarity=0.049 Sum_probs=113.1 Q ss_pred CeEEEEeeeC----------CEEEEeeeeecCccceee----------------eeecCCCceEEEeecCCCCCCceeeC Q lcl|Aclame:pro 1 MFEQVYRIEN----------GRARLGKLAWRPPRTISR----------------FDVAPDGGLVAIEQWGVFGKATVRIP 54 (355) Q Consensus 1 V~Eivw~~~~----------g~~~~~~l~~r~~~~i~~----------------f~~~~~g~l~~~~q~~~~g~~~~~ip 54 (355) |-+++.+..- ...........|...+.. +.++.+|.... . .+ +.....+| T Consensus 163 vd~i~rr~~~t~~~l~e~~~~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~sv~~e~dg~~~~-~-~~--~~~~~e~P 238 (510) T protein:vir:63 163 WMDIVLKQRYKSKDLDEEYKQDLMRAGRNLSGSGSVDLYTHVQRKKGTAMEYAELYHEIDGVRVG-K-EG--RWPIHLCP 238 (510) T ss_pred eeEEEeeeeccHHHHhHHhhhhhhccccccCCCcceEEEEEEEeecCCCceEEEEEEEecCceec-c-cc--ccccccCc Confidence 2222221100 000000000011111110 11222232211 0 01 11112234 Q ss_pred CccEEEEecCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 55 VDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEG 134 (355) Q Consensus 55 ~~k~i~~~~~~~~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~l 134 (355) |++.|+....|+.||.|....++....--+...+.-+.++++-.-| |+...+.+... T Consensus 239 ---~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~-~~lv~p~g~~~------------------- 295 (510) T protein:vir:63 239 ---YIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEV-LNLVDEAKGAV------------------- 295 (510) T ss_pred ---eeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcccCcccccc------------------- Confidence 5889999999999999999999999988888888888888875444 33322222110 Q ss_pred HHHHHHHhcCCceeEEccCC-ceEEEeccC--CCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhhHHHHHHHHH Q lcl|Aclame:pro 135 LQLAKEFRAGEAAGGYIPHG-ANFTLTGVQ--GKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFT 211 (355) Q Consensus 135 ~~~~~~~~~G~~~~~v~p~~-~~ie~~~~~--g~~~~~~~~i~~~d~~Isk~ilgqtlt~~~~~~~GS~Al~~vh~~v~~ 211 (355) ..++..|..+ .++|.. .+|..+... ++...-...|+.+...|..+++.. |.. .+++..-+.||+....+ T Consensus 296 ---~~~~~~~~~g-~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~-l~~---~~~~rvTAtEV~~r~~E 367 (510) T protein:vir:63 296 ---VDDYQDAEMG-DYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMYG-ANQ---RDAERVTAEEVRITAEE 367 (510) T ss_pred ---hhhhccCCCc-eeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHHhh-ccc---CCCCCcCHHHHHHHHHH Confidence 1122223333 334533 345555422 222334678999999999998753 332 12222344555544322 Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHhCC--CCcccccEE-E---ecCCC-----ccHHHHHHHHHHHHhCCCcc----- Q lcl|Aclame:pro 212 G--SLNAVMKHIADVTQQHVVEDLVDQNW--GPEEPAPRL-V---PAQLG-----KEQPVTAEAIRALVECGAFT----- 273 (355) Q Consensus 212 ~--~~~ad~~~i~~~ln~~li~~l~~lNf--~~~~~~P~~-~---~~~~~-----~d~~~~ae~~~~l~~~G~~~----- 273 (355) . .+-.-.-.+...+..-||.+.+.+=. +--.+.|.. . ..... .+........+.+...|... T Consensus 368 ~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~is~Laraq~~~~l~~~~q~l~~~~~~aq~~~~ 447 (510) T protein:vir:63 368 AENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETGLPALSRSAAVQSMLNASQVIAGLAPIAQLDPR 447 (510) T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhcccceecchhHHHHHHHHHHHHHHHHHHHHhcCchhhhcc Confidence 2 12222222222222223333221111 100011111 0 11111 11111222223333333211 Q ss_pred -cchhhHHHHHHHhCCCCC-C-CccccccccccccCCccccccccccccccCCcccCccccchhHHHHHhHhhhchHHhh Q lcl|Aclame:pro 274 -ADPELEKDLRARYGLPAP-A-ERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRR 350 (355) Q Consensus 274 -~~~~~~~~~~e~~glp~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (355) -.+...+++.+.+|+|+. - ..++.+....... ........+..+........-- T Consensus 448 id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~-----------------------~qq~~~~~~~~~~~~~~a~~~~ 504 (510) T protein:vir:63 448 ISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEQQ-----------------------RQQAAQAQAAQETLLEGASDMT 504 (510) T ss_pred CCHHHHHHHHHHHhCCChhHhcCCHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhc Confidence 011224566677777321 0 0011111000000 0000011111111222222222 Q ss_pred hcCCC Q lcl|Aclame:pro 351 CAPDG 355 (355) Q Consensus 351 ~~~~~ 355 (355) .+|-| T Consensus 505 ~~~~g 509 (510) T protein:vir:63 505 NALAG 509 (510) T ss_pred ccccC Confidence 33444 No 251 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=23.96 E-value=2.2 Score=18.67 Aligned_cols=299 Identities=13% Similarity=0.089 Sum_probs=124.5 Q ss_pred CeEEEEeeeCCEEEEeeeeecCccceee---------------------eeecCCCceEEEeecCCC--CCCceeeCCcc Q lcl|Aclame:pro 1 MFEQVYRIENGRARLGKLAWRPPRTISR---------------------FDVAPDGGLVAIEQWGVF--GKATVRIPVDR 57 (355) Q Consensus 1 V~Eivw~~~~g~~~~~~l~~r~~~~i~~---------------------f~~~~~g~l~~~~q~~~~--g~~~~~ip~~k 57 (355) .+.+|=..++ .+.+|...+|+.+.+ |.++..+. -.-.+.+.. ...++.||.. T Consensus 146 ~fHkiid~k~---GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~-~~~~~~~~~~~~~~~vkI~~d- 220 (511) T protein:vir:56 146 YFHKILDKDN---NIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDY-KMPSWMSATNRAQTSFRIPKD- 220 (511) T ss_pred EEEEEecccc---ceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCc-ccCcccccccccccceeechh- Confidence 2233223222 334444445554432 22222110 000000111 1244667764 Q ss_pred EEEEecCCC----CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecCCCCccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 58 LVVFVNERE----GANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEE 133 (355) Q Consensus 58 ~i~~~~~~~----~~~p~G~~ll~~~~~~~~~K~~~~~~w~~~~Er~~~g~p~~~~~~~~~~~~~d~~~~e~~~~~~~~~ 133 (355) -|+|.|..- ..+++..|.|+++..++==-+......+.+ |. .--|-+..-|-.-..- -..++++ - T Consensus 221 aI~y~hSGL~d~~~~~g~i~syLhkAiKp~NQLkm~EDAlVIY--Ri-tRAPeRRvFYIDVGnL-Pk~KAeq-------Y 289 (511) T protein:vir:56 221 AIVFAHSGLMRGCADDPYIIGYLDRAIKPANQLKMLEDALVIY--RL-ARAPERRVFYVDVGNL-PTQKAQQ-------Y 289 (511) T ss_pred heeeecccceeccCCCCeeeccchhhhHHHHhhHHHHhhHHHH--hh-hccccceEEEEecCCC-CchhHHH-------H Confidence 466777653 578889999999999984444443322222 21 1223322222110000 0112222 2 Q ss_pred HHHHHHHHhc----CCceeEEcc-------------------CCceEEEeccCCCcccHHHHHHHHHHHHHHHHhhhhhc Q lcl|Aclame:pro 134 GLQLAKEFRA----GEAAGGYIP-------------------HGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLT 190 (355) Q Consensus 134 l~~~~~~~~~----G~~~~~v~p-------------------~~~~ie~~~~~g~~~~~~~~i~~~d~~Isk~ilgqtlt 190 (355) ++.++..++. .+++|-|-. .|++|..|....+.. -.+=|+|+.+.+.+++-.+.-- T Consensus 290 l~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlg-em~DV~YF~kKLy~aLnVP~SR 368 (511) T protein:vir:56 290 VNGIMQNVKNRVVYDTQTGQVKNTTNAMSMLEDYYLPRREGSKGTEVSTLPGGQSLG-DIEDVLYFNRKLYKAMRIPTSR 368 (511) T ss_pred HHHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcC-hHHHHHHHHHHHHHHhCCCccc Confidence 4444444332 122222211 257888775433332 3344899999999999888644 Q ss_pred cccCCccchhhh---HHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCcccccEEEecCCC-----c Q lcl|Aclame:pro 191 LGGDKSTGSYAL---GDT-FASF-FTGSLNAVMKHIADVTQQHVVEDLVDQNW------GPEEPAPRLVPAQLG-----K 254 (355) Q Consensus 191 ~~~~~~~GS~Al---~~v-h~~v-~~~~~~ad~~~i~~~ln~~li~~l~~lNf------~~~~~~P~~~~~~~~-----~ 254 (355) ++.++++++..+ +++ ..|+ |...+......++..|..-|-..|+.=|- ......-+|.|.... . T Consensus 369 l~~e~q~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElK 448 (511) T protein:vir:56 369 AASEDQTGGINFGQGAEITRDELKFTKFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAK 448 (511) T ss_pred ccCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHH Confidence 443332222322 232 2232 33456666666666665544344443331 111112234443322 2 Q ss_pred cHHHHHHHHHHHHhCCCcccchhhHHHHHH-HhCCCCCCCccccccccccccCCcccccccccc Q lcl|Aclame:pro 255 EQPVTAEAIRALVECGAFTADPELEKDLRA-RYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQ 317 (355) Q Consensus 255 d~~~~ae~~~~l~~~G~~~~~~~~~~~~~e-~~glp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (355) +.+.+.+++..|..+--.+-.-.+.+|+++ .|.+.+.+=.++ ...-.+....+.-.++..+. T Consensus 449 e~Eil~~Rl~~l~~~dpyvGky~S~~yi~k~ILr~tDeei~~~-~k~I~~E~k~~~~~~~e~~f 511 (511) T protein:vir:56 449 ELEILNSRMNAMRDIQDYAGKYYSHKYIQKNILRLSDDQITAM-QSEIDEEETNPRFQQDDQGF 511 (511) T ss_pred HHHHHHHHHHHHHHhcchhccccchHHHHHHHhccCHHHHHHH-HHHHHHhhcCCCCCCcccCC Confidence 233445566666554322222335677754 445542111110 00000001111111111222 Done!