BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:106551|NCBI_annot:putative terminase large subunit|genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 (424 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 895 0.0 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 476 e-136 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 128 1e-31 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 128 1e-31 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 128 2e-31 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 127 2e-31 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 121 1e-29 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 117 3e-28 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 117 3e-28 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 113 4e-27 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 108 1e-25 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 91 2e-20 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 82 1e-17 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 82 1e-17 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 77 5e-16 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 59 2e-10 gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: ter... 56 8e-10 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 56 1e-09 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 53 8e-09 gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 52 9e-09 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 52 1e-08 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 52 1e-08 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 52 1e-08 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 52 1e-08 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 52 1e-08 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 51 2e-08 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 49 9e-08 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 48 2e-07 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 46 7e-07 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 45 1e-06 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 45 2e-06 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 45 2e-06 gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putat... 41 2e-05 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 41 3e-05 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 38 2e-04 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 38 3e-04 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 37 4e-04 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 37 5e-04 gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 35 0.002 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 34 0.003 gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp... 33 0.004 gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp... 33 0.005 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 33 0.006 gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: put... 33 0.008 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 31 0.026 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 31 0.028 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 31 0.028 gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hyp... 30 0.043 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 27 0.48 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 26 0.69 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 26 0.71 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 26 0.81 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 25 1.2 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 25 1.3 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 25 1.3 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%) Query: 1 MKITRFNFVPFSRKQLQVLSWWSNPQILNQEAIICDGSVRAGKTVVMALSYILWSMTNFS 60 MKITRFNFVPFSRKQLQVLSWWSNPQILNQEAIICDGSVRAGKTVVMALSYILWSMTNFS Sbjct: 1 MKITRFNFVPFSRKQLQVLSWWSNPQILNQEAIICDGSVRAGKTVVMALSYILWSMTNFS 60 Query: 61 GQQFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYFIFGGKD 120 GQQFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYFIFGGKD Sbjct: 61 GQQFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYFIFGGKD 120 Query: 121 EASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWI 180 EASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWI Sbjct: 121 EASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWI 180 Query: 181 DQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKD 240 DQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKD Sbjct: 181 DQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKD 240 Query: 241 TMVVNELPNHFEKYYVSCDYGTLNPTAFLLWGRNHGVWYLVKEYYYSGRTTSRQKTDEEY 300 TMVVNELPNHFEKYYVSCDYGTLNPTAFLLWGRNHGVWYLVKEYYYSGRTTSRQKTDEEY Sbjct: 241 TMVVNELPNHFEKYYVSCDYGTLNPTAFLLWGRNHGVWYLVKEYYYSGRTTSRQKTDEEY 300 Query: 301 CHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKF 360 CHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKF Sbjct: 301 CHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKF 360 Query: 361 SMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYTIIYKKVTAKVTVRPR 420 SMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYTIIYKKVTAKVTVRPR Sbjct: 361 SMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYTIIYKKVTAKVTVRPR 420 Query: 421 VRGL 424 VRGL Sbjct: 421 VRGL 424 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 476 bits (1226), Expect = e-136, Method: Compositional matrix adjust. Identities = 226/410 (55%), Positives = 297/410 (72%), Gaps = 4/410 (0%) Query: 1 MKITRFNFVPFSRKQLQVLSWWS-NPQILNQEAIICDGSVRAGKTVVMALSYILWSMTNF 59 M+ F F PFS+KQ +VL+WW N + E II DG++R+GKTV M+L++++W+MT+F Sbjct: 6 MQTNTFKFQPFSKKQKKVLTWWLWNSPVHESEGIIADGAIRSGKTVSMSLAFVIWAMTSF 65 Query: 60 SGQQFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYFIFGGK 119 + Q F M GKTIGSF RNVL+ L M++S G++ R++N+I I+K +N ++IFGGK Sbjct: 66 NHQNFAMCGKTIGSFNRNVLKLLLVMIQSRGFSYVYHRTDNLIEITKGDVSNDFYIFGGK 125 Query: 120 DEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNW 179 DE+SQDL+QG+TLAG FFDEVALMP+SFVNQ T RCSVTGSK WFNCNP GP+HWFK+NW Sbjct: 126 DESSQDLIQGLTLAGIFFDEVALMPESFVNQGTGRCSVTGSKWWFNCNPDGPYHWFKVNW 185 Query: 180 IDQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDK 239 ID+ + K L +HF M DN SL RY Y GVFYQRYIQGLW ++EG++YD F K Sbjct: 186 IDKAETKNMLYLHFDMDDNLSLSENIKKRYRSQYQGVFYQRYIQGLWTVAEGIVYDMFSK 245 Query: 240 DTMVVNELPNHFE-KYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGRTTSRQKTD 297 D VV+ LP + YVS DYGT N T FLLW ++ G +YL +EYYYSGR + QKT+ Sbjct: 246 DKHVVSTLPEMSKLGKYVSVDYGTQNATVFLLWEKDIIGKYYLTREYYYSGRDENVQKTN 305 Query: 298 EEYCHDLKEFLGDIRAE-MIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEG 356 EY DL +LGD + +IIDPSAASF L++ G+K++KA+N+VL+GIR + + + Sbjct: 306 AEYADDLTAWLGDTNIDRIIIDPSAASFIAELKKRGYKIKKARNNVLEGIRFVGSMLGQE 365 Query: 357 KIKFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYTI 406 KI +C N KE +YVWD+KA+ +GEDKP+KQ DHA DA+RYF YT+ Sbjct: 366 KIAVHESCVNTLKEFHAYVWDEKASANGEDKPIKQFDHAMDALRYFCYTV 415 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 128 bits (322), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 109/395 (27%), Positives = 177/395 (44%), Gaps = 45/395 (11%) Query: 31 EAIICDGSVRAGKTVVMALSYILWSMT-NFSGQQFGMAGKTIGSFRRNVLRPLRSMLESE 89 + +I G+ RAGKT V L +++ T G F + G T S RRN+L + +L E Sbjct: 23 KVLIASGAKRAGKTYVFILLFLMHIATYKDKGLNFIIGGATQASIRRNILDDMELILGRE 82 Query: 90 GYNVYDSRSENMITISKNGHTNFY----FIFGGKDEASQDLVQGITLAGFFFDEVALMPQ 145 +T+ K+ + ++F G++ + +G T AG F +E + Sbjct: 83 ------------LTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHN 130 Query: 146 SFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWIDQMKDKRA---LRI---HFTMHDNP 199 F+ + +RCS G+++ + NP P H K ++ID+ + + L I FT+ DN Sbjct: 131 MFIKEVFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNT 190 Query: 200 SLDSVTINR-YERMYSGVFYQRYIQGLWVMSEGVIYDNFDKDTMVVNE---LPNHFEKYY 255 LD I +G+F R I G WV +EGV+Y +F + + E ++ Y Sbjct: 191 FLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYITEEEFKTKQIKRKY 250 Query: 256 VSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFL---GDI 311 D+G + + ++ + G Y+++E+ + R K +++ K + GDI Sbjct: 251 AGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAH------RHKEIDDWVAIAKGVIKRHGDI 304 Query: 312 RAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFK-E 370 D + R+ K R A V+ GI V KI +LFK E Sbjct: 305 L--FYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKISIIKEKVSLFKEE 362 Query: 371 LASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 + +YVW D A D+PVK +D DA+RY VYT Sbjct: 363 IYNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 392 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 128 bits (321), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 186/414 (44%), Gaps = 52/414 (12%) Query: 14 KQLQVLSWWSN--PQILNQEAIICDGSVRAGKTVVMALSYILWSMT-NFSGQQFGMAGKT 70 KQ +V + + N P++L I G+ RAGKT V L +++ T G F + G T Sbjct: 10 KQQEVWNCFINDKPKVL-----IASGAKRAGKTYVFILLFLMHIATYKDKGLNFIIGGAT 64 Query: 71 IGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFY----FIFGGKDEASQDL 126 S RRN+L + +L E +T+ K+ + ++F G++ + Sbjct: 65 QASIRRNILDDMELILGRE------------LTLDKSNAVKIFGNKVYVFDGQNSDAWKK 112 Query: 127 VQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWIDQMKDK 186 +G T AG F +E + F+ + +RCS G+++ + NP P H K ++ID+ + Sbjct: 113 ARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQR 172 Query: 187 RA---LRI---HFTMHDNPSLDSVTINR-YERMYSGVFYQRYIQGLWVMSEGVIYDNFDK 239 + L I FT+ DN LD I +G+F R I G WV +EGV+Y +F + Sbjct: 173 LSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKE 232 Query: 240 DTMVVNE---LPNHFEKYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGRTTSRQK 295 + E ++ Y D+G + + ++ + G Y+++E+ + R K Sbjct: 233 KVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAH------RHK 286 Query: 296 TDEEYCHDLKEFL---GDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTA 352 +++ K + GDI D + R+ K R A V+ GI V Sbjct: 287 EIDDWVAIAKGVIKRHGDIL--FYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRL 344 Query: 353 MNEGKIKFSMNCPNLFK-ELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 KI +LFK E+ +YVW D A D+PVK +D DA+RY VYT Sbjct: 345 FKLNKIFIIKEKVSLFKEEIYNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 393 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 128 bits (321), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 186/414 (44%), Gaps = 52/414 (12%) Query: 14 KQLQVLSWWSN--PQILNQEAIICDGSVRAGKTVVMALSYILWSMT-NFSGQQFGMAGKT 70 KQ +V + + N P++L I G+ RAGKT V L +++ T G F + G T Sbjct: 12 KQQEVWNCFINDKPKVL-----IASGAKRAGKTYVFILLFLMHIATYKDKGLNFIIGGAT 66 Query: 71 IGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFY----FIFGGKDEASQDL 126 S RRN+L + +L E +T+ K+ + ++F G++ + Sbjct: 67 QASIRRNILDDMELILGRE------------LTLDKSNAVKIFGNKVYVFDGQNSDAWKK 114 Query: 127 VQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWIDQMKDK 186 +G T AG F +E + F+ + +RCS G+++ + NP P H K ++ID+ + Sbjct: 115 ARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQR 174 Query: 187 RA---LRI---HFTMHDNPSLDSVTINR-YERMYSGVFYQRYIQGLWVMSEGVIYDNFDK 239 + L I FT+ DN LD I +G+F R I G WV +EGV+Y +F + Sbjct: 175 LSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKE 234 Query: 240 DTMVVNE---LPNHFEKYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGRTTSRQK 295 + E ++ Y D+G + + ++ + G Y+++E+ + R K Sbjct: 235 KVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAH------RHK 288 Query: 296 TDEEYCHDLKEFL---GDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTA 352 +++ K + GDI D + R+ K R A V+ GI V Sbjct: 289 EIDDWVAIAKGVIKRHGDIL--FYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRL 346 Query: 353 MNEGKIKFSMNCPNLFK-ELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 KI +LFK E+ +YVW D A D+PVK +D DA+RY VYT Sbjct: 347 FKLNKIFIIKEKVSLFKEEIYNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 395 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 127 bits (319), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 186/414 (44%), Gaps = 52/414 (12%) Query: 14 KQLQVLSWWSN--PQILNQEAIICDGSVRAGKTVVMALSYILWSMT-NFSGQQFGMAGKT 70 KQ +V + + N P++L I G+ RAGKT V L +++ T G F + G T Sbjct: 9 KQQEVWNCFINDKPKVL-----IASGAKRAGKTYVFILLFLMHIATYKDKGLNFIIGGAT 63 Query: 71 IGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFY----FIFGGKDEASQDL 126 S RRN+L + +L E +T+ K+ + ++F G++ + Sbjct: 64 QASIRRNILDDMELILGRE------------LTLDKSNAVKIFGNKVYVFDGQNSDAWKK 111 Query: 127 VQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWIDQMKDK 186 +G T AG F +E + F+ + +RCS G+++ + NP P H K ++ID+ + Sbjct: 112 ARGFTSAGAFLNEGTALHNMFIKEVFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQR 171 Query: 187 RA---LRI---HFTMHDNPSLDSVTINR-YERMYSGVFYQRYIQGLWVMSEGVIYDNFDK 239 + L I FT+ DN LD I +G+F R I G WV +EGV+Y +F + Sbjct: 172 LSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKE 231 Query: 240 DTMVVNE---LPNHFEKYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGRTTSRQK 295 + E ++ Y D+G + + ++ + G Y+++E+ + R K Sbjct: 232 KVHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAH------RHK 285 Query: 296 TDEEYCHDLKEFL---GDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTA 352 +++ K + GDI D + R+ K R A V+ GI V Sbjct: 286 EIDDWVAIAKGVIKRHGDIL--FYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRL 343 Query: 353 MNEGKIKFSMNCPNLFK-ELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 KI +LFK E+ +YVW D A D+PVK +D DA+RY VYT Sbjct: 344 FKLNKIFIIKEKVSLFKEEIYNYVWKDNA-----DEPVKLNDDTLDALRYAVYT 392 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 121 bits (304), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/418 (26%), Positives = 183/418 (43%), Gaps = 49/418 (11%) Query: 11 FSRKQLQVLSWWSNPQILNQEAIICDGSVRAGKTVVMALSYI--LWSMTNFSGQ------ 62 + KQ QVL+ + + + + +I G+ RAGKT++ +I L + S Q Sbjct: 7 LTNKQQQVLNSYLHD---DWKFLILTGAFRAGKTIMNNYLFIMELKRIARLSIQRKDPHP 63 Query: 63 QFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYFIFGGKDEA 122 Q+ +AG + S NV+ + S IT+ + H + Y +FG Sbjct: 64 QYILAGYSSNSIYTNVISAIESYFG--------------ITMKTDRHGH-YHLFGIDIVP 108 Query: 123 SQ-------DLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWF 175 S ++G+T G + +E +L + RCS+ G+++ + NP P HW Sbjct: 109 SYTGSIRGVGFIRGMTSYGAYVNEASLATHDVFQEILQRCSIEGARIICDTNPDIPTHWL 168 Query: 176 KLNWIDQMKDKRALR-IHFTMHDNPSLDSVTINRYERMYS-GVFYQRYIQGLWVMSEGVI 233 K ++ID K ++ FT+ DN L + + G+FY R I G WV +G++ Sbjct: 169 KTDYIDNHDPKARIKSFTFTIDDNTFLSKDYVESIKAATPRGMFYDRGILGQWVTGDGIV 228 Query: 234 YDNFDKDTMVV--NELPNHFEKYYVSCDYGTLNPTAFLLWGRNH-GVWYLVKEYYYSGRT 290 Y +F+KDTMV+ N +P+ + YYV D+G +P +L G + G Y++++Y Sbjct: 229 YQDFNKDTMVIPKNRVPDGLD-YYVGVDWGYEHPNPIILLGDDKDGNTYVLEDY------ 281 Query: 291 TSRQKTDEEYCHDLKEFLGDIRAEMII--DPSAASFSTTLRQNGFKVRKAKNDVLDGIRV 348 T + K + + +I D + + NG A +VL GI Sbjct: 282 TQKHKFINYWVKVAQNLQTRFGRNLIFYADSARPDNVNEFQSNGLNCINANKNVLPGIEC 341 Query: 349 TQTAMNEGKI-KFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 M EGK L E+ Y WD+ ++ V+ +D DA+RY +Y+ Sbjct: 342 VARKMREGKFYVVDTASSGLLDEIYQYAWDESTGLPLKENDVRHNDR-LDAIRYAIYS 398 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 117 bits (293), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 192/417 (46%), Gaps = 50/417 (11%) Query: 11 FSRKQLQVLSWWSNPQILNQE--AIICDGSVRAGKTVVMALSYILWSM--------TNFS 60 ++ KQ+++L Q Q+ +I G+ R GKT++ ++ M Sbjct: 8 YTDKQIEILK-----QTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIE 62 Query: 61 GQQFGMAGKTIGSFRRNVLRPLRSMLESE-GYNVYDSRSENMITISKNGHTNFYFIFGGK 119 Q+ +AG T+G+ ++NVL L + E ++ Y+S + + + GH+ I Sbjct: 63 TPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA-- 120 Query: 120 DEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNW 179 ++G+T G + +E +L + ++ +RCS TG+++ + NP P HW ++ Sbjct: 121 -------IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDY 173 Query: 180 IDQMKDKRALRIH-FTMHDNPSLDSVTINRYERMY-----SGVFYQRYIQGLWVMSEGVI 233 I+ K + H F + DN L+ +RY+ SG+FY+R I G+WV +GV+ Sbjct: 174 IENTDPKAGILSHQFKLDDNNFLN----DRYKESIKASTPSGMFYERNINGMWVSGDGVV 229 Query: 234 YDNFD--KDTMVVNELPN-HFEKYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGR 289 Y +FD ++T+ +EL + ++Y+ D+G + + +L GR G +Y ++E+ + + Sbjct: 230 YADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFK 289 Query: 290 TTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVT 349 D+ G+I D + + T R++ + A L G+ Sbjct: 290 FIDDWVV---IAKDIVSRYGNIN--FYCDTARPEYITEFRRHRLRAINADKSKLSGVEEV 344 Query: 350 QTAMNEGKIKFSMNCPNLFK-ELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 + K+ + + FK E+ YVW E P+K+ D D++RY +YT Sbjct: 345 AKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGE-----PIKEFDDVLDSLRYAIYT 396 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 117 bits (293), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 192/417 (46%), Gaps = 50/417 (11%) Query: 11 FSRKQLQVLSWWSNPQILNQE--AIICDGSVRAGKTVVMALSYILWSM--------TNFS 60 ++ KQ+++L Q Q+ +I G+ R GKT++ ++ M Sbjct: 8 YTDKQIEILK-----QTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIE 62 Query: 61 GQQFGMAGKTIGSFRRNVLRPLRSMLESE-GYNVYDSRSENMITISKNGHTNFYFIFGGK 119 Q+ +AG T+G+ ++NVL L + E ++ Y+S + + + GH+ I Sbjct: 63 TPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA-- 120 Query: 120 DEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNW 179 ++G+T G + +E +L + ++ +RCS TG+++ + NP P HW ++ Sbjct: 121 -------IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDY 173 Query: 180 IDQMKDKRALRIH-FTMHDNPSLDSVTINRYERMY-----SGVFYQRYIQGLWVMSEGVI 233 I+ K + H F + DN L+ +RY+ SG+FY+R I G+WV +GV+ Sbjct: 174 IENTDPKAGILSHQFKLDDNNFLN----DRYKESIKASTPSGMFYERNINGMWVSGDGVV 229 Query: 234 YDNFD--KDTMVVNELPN-HFEKYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGR 289 Y +FD ++T+ +EL + ++Y+ D+G + + +L GR G +Y ++E+ + + Sbjct: 230 YADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFK 289 Query: 290 TTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVT 349 D+ G+I D + + T R++ + A L G+ Sbjct: 290 FIDDWVV---IAKDIVSRYGNIN--FYCDTARPEYITEFRRHRLRAINADKSKLSGVEEV 344 Query: 350 QTAMNEGKIKFSMNCPNLFK-ELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 + K+ + + FK E+ YVW E P+K+ D D++RY +YT Sbjct: 345 AKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGE-----PIKEFDDVLDSLRYAIYT 396 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 113 bits (282), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 105/419 (25%), Positives = 183/419 (43%), Gaps = 58/419 (13%) Query: 11 FSRKQLQVLSWWSNPQILNQEAIICD--GSVRAGKTVVMALSYI--------LWSMTNFS 60 ++++QL+VL++ I N + IC G+ RAGKTVV +++ + Sbjct: 7 YTKRQLEVLNY-----IWNHDWFICGLHGAKRAGKTVVNNDTFVTELSRVRKIADRMAID 61 Query: 61 GQQFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYF------ 114 + +AG + + + NVL+ L YN Y + + H +F F Sbjct: 62 EPIYILAGTSSTAIQNNVLQEL--------YNKYGFEPK------YDKHGSFVFCGVKVV 107 Query: 115 -IFGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFH 173 ++ G + +G T G + +E +L + + +RCS G+++ ++ NP P H Sbjct: 108 QVYTGSISGLK-RARGFTAFGAYVNEASLANELVFKEIISRCSGDGARVVWDSNPDNPNH 166 Query: 174 WFKLNWIDQMKDKRALRIHFTMHDNPSLDSVTINRYERMY-SGVFYQRYIQGLWVMSEGV 232 W ++I + D + + F + DN L I+ + G FY R I GLW ++EG Sbjct: 167 WLNRDYIGK-NDGKIIDFSFKLDDNTFLSKRYIDSIKAATPKGKFYDRDILGLWTVAEGA 225 Query: 233 IYDNFDKDTMVVNELPNHFEKYYVSCDYGTLNPTAFLLWGRNHGV---WYLVKEYYYSGR 289 IY ++D VV+ELP ++Y+ D+G + + ++ G GV +YLV G Sbjct: 226 IYADYDSKIHVVDELP-EMKRYFGGIDWGYTHYGSIVIVG--EGVDNNFYLV-----DGV 277 Query: 290 TTSRQKTD--EEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIR 347 ++ D E L G+I D + GF + A V+ GI Sbjct: 278 AAQFKEIDWWVEQARKLTGIYGNI--PFYADSARPEHVARFENEGFDIMNANKSVIAGIE 335 Query: 348 VTQTAMNEGKIKFSMN-CPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 + E K+ P F E+ Y W + + +D+P+K+ D D++RY +Y+ Sbjct: 336 LIAKLFKEKKLYVKRGFVPRFFDEIYQYRWKENST---KDEPLKEFDDVLDSVRYAIYS 391 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 108 bits (270), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 105/419 (25%), Positives = 183/419 (43%), Gaps = 58/419 (13%) Query: 11 FSRKQLQVLSWWSNPQILNQEAIICD--GSVRAGKTVVMALSYIL-WSMTNFSGQQFG-- 65 ++++QL+VL++ I N + IC G+ RA KTVV +++ S + G Sbjct: 7 YTKRQLEVLNY-----IWNHDWFICGLHGAKRASKTVVNNDTFVTELSRVRKIADRLGVD 61 Query: 66 -----MAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSENMITISKNGHTNFYF------ 114 +AG + + + NVL+ L YN Y + + H +F F Sbjct: 62 EPIYILAGTSSTAIQNNVLQEL--------YNKYGFEPK------YDKHGSFVFCGVKVV 107 Query: 115 -IFGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFH 173 ++ G + +G T G + +E +L + + +RCS G+++ ++ NP P H Sbjct: 108 QVYTGSISGLK-RARGFTAFGAYVNEASLANEFVFKEIISRCSGDGARVVWDSNPDNPNH 166 Query: 174 WFKLNWIDQMKDKRALRIHFTMHDNPSLDSVTINRYERMY-SGVFYQRYIQGLWVMSEGV 232 W ++I + D + + F + DN L I+ + + G FY R I G W ++EG Sbjct: 167 WLNRDYIGK-NDGKIIDFSFKLDDNTFLSKRYIDSIKAVTPKGKFYDRDILGHWTVAEGA 225 Query: 233 IYDNFDKDTMVVNELPNHFEKYYVSCDYGTLNPTAFLLWGRNHGV---WYLVKEYYYSGR 289 IY ++D VV+ELP ++Y+ D+G + + ++ G GV +YLV G Sbjct: 226 IYADYDSKIHVVDELP-EMKRYFGGIDWGYTHYGSIVIVG--EGVDNNFYLV-----DGV 277 Query: 290 TTSRQKTD--EEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIR 347 ++ D E L G+I D + GF + A V+ GI Sbjct: 278 RAQFKEIDWWVEQARKLTGIYGNI--PFYADSARPEHVARFENEGFDISNANKSVIAGIE 335 Query: 348 VTQTAMNEGKIKFSMN-CPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 + E K+ P F E+ Y W + + +D+P+K+ D D++RY +Y+ Sbjct: 336 LIAKLFKEQKLYVKRGFVPRFFDEIYQYRWKENST---KDEPLKEFDDVLDSVRYAIYS 391 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 91.3 bits (225), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 132/310 (42%), Gaps = 24/310 (7%) Query: 115 IFGGKDEASQDLVQGITLAGFFFDEVALMP---QSFVNQATARCSVTGSKMWFNCNPSGP 171 +F A D G + FDE A+ +F Q SK F P G Sbjct: 131 LFKLASAAQADSAVGRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGG 190 Query: 172 FHWFKLNWIDQMKDKRA--LRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMS 229 +WFK + D + IH T DNP D I R S ++++ + + + Sbjct: 191 -NWFKEFYAYGFDDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADFSVF 249 Query: 230 EGVIYDNFDKDTMVVN-ELPNHFEK------YYVSCDYGTLNPTAFLL--WGRNHGVWYL 280 EG I+D F+ V + + HF K + D G +PTA L + + +Y+ Sbjct: 250 EGQIFDTFNAIDHVKDLKGMRHFFKDDEAFETLLGIDVGYRDPTAVLTIKYHYDTDTYYV 309 Query: 281 VKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLR-QNGFKVRKAK 339 ++EY + +TT++ ++C D + + +D +AA F L ++ AK Sbjct: 310 LEEYQQAEKTTAQHAAYIQHCIDRYKV-----DRIFVDSAAAQFRQDLAYEHEIASAPAK 364 Query: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQHD---HAC 396 VLDG+ Q +GKI +C +L L +Y WD + E + +HD H C Sbjct: 365 KSVLDGLACLQALFQQGKIIVDASCSSLIHALQNYKWDFQEGEEKLSREKPRHDANSHLC 424 Query: 397 DAMRYFVYTI 406 DA+RY +Y+I Sbjct: 425 DALRYGIYSI 434 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 82.0 bits (201), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 146/354 (41%), Gaps = 52/354 (14%) Query: 94 YDSRSENMITISKNGHTNFYFIFGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATA 153 +D R ++++ + G+ Y+ GGK S + G++L F E+ L+ F+ + Sbjct: 61 HDERGDHLLITTPKGNKRVYYKGGGKVN-SVGAITGMSLGSVVFCEINLLHMDFIQECFR 119 Query: 154 RCSVTGSKMWF-NCNPSGPFHWFKLNWIDQMKDKRALR-IHFTMHDNPSLDSVTINRYER 211 R + + NP P H I + D + R H+TM DNP L T R + Sbjct: 120 RTWAAKLRYHLADLNPPAPQHPV----IKDVFDVQNTRWTHWTMDDNPIL---TAERKQN 172 Query: 212 MYSGV-----FYQRYIQGLWVMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLNPT 266 + + + Y+R + G VM +GVIY FD + V++ L + Y D G + T Sbjct: 173 IINSLKKNPYLYKRDVLGQRVMPQGVIYGLFDTEKNVLDALIGEPVEMYFCADGGQSDAT 232 Query: 267 A----FLLWGRNHGVWYL----VKEYYYSGRTTSRQKTDEEYCHDLKEFLG------DIR 312 + + R++G V YY+SG T + K Y +LK F+ +R Sbjct: 233 SMSCNIVTRVRDNGRISFRLNRVAHYYHSGADTGQVKAMSTYALELKVFIDWCVKKYQMR 292 Query: 313 -AEMIIDPSAASFSTTLRQNGFKVRKAKNDVLD----------GIRVTQTAMNEGKIKFS 361 E+ +DP+ S L + G A N+ D GI Q +++G Sbjct: 293 YTEVFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLV 352 Query: 362 MNCP------NLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYTIIYK 409 + + KE+ Y DD KP+ + +HA D RY V +++ Sbjct: 353 NHSEEEYDHYHFLKEIGLYSRDDNG------KPIDKDNHAMDEFRYSVNVFVHR 400 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 81.6 bits (200), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 146/354 (41%), Gaps = 52/354 (14%) Query: 94 YDSRSENMITISKNGHTNFYFIFGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATA 153 +D R ++++ + G+ Y+ GGK S + G++L F E+ L+ F+ + Sbjct: 33 HDERGDHLLITTPKGNKRVYYKGGGK-VNSVGAITGMSLGSVVFCEINLLHMDFIQECFR 91 Query: 154 RCSVTGSKMWF-NCNPSGPFHWFKLNWIDQMKDKRALR-IHFTMHDNPSLDSVTINRYER 211 R + + NP P H I + D + R H+TM DNP L T R + Sbjct: 92 RTWAAKLRYHLADLNPPAPQHPV----IKDVFDVQNTRWTHWTMDDNPIL---TAERKQN 144 Query: 212 MYSGV-----FYQRYIQGLWVMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLNPT 266 + + + Y+R + G VM +GVIY FD + V++ L + Y D G + T Sbjct: 145 IINSLKKNPYLYKRDVLGQRVMPQGVIYGLFDTEKNVLDALIGEPVEMYFCADGGQSDAT 204 Query: 267 A----FLLWGRNHGVWYL----VKEYYYSGRTTSRQKTDEEYCHDLKEFLG------DIR 312 + + R++G V YY+SG T + K Y +LK F+ +R Sbjct: 205 SMSCNIVTRVRDNGRISFRLNRVAHYYHSGADTGQVKAMSTYALELKVFIDWCVKKYQMR 264 Query: 313 -AEMIIDPSAASFSTTLRQNGFKVRKAKNDVLD----------GIRVTQTAMNEGKIKFS 361 E+ +DP+ S L + G A N+ D GI Q +++G Sbjct: 265 YTEVFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLV 324 Query: 362 MNCP------NLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYTIIYK 409 + + KE+ Y DD KP+ + +HA D RY V +++ Sbjct: 325 NHSEEEYDHYHFLKEIGLYSRDDNG------KPIDKDNHAMDEFRYSVNVFVHR 372 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 76.6 bits (187), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 97/451 (21%), Positives = 182/451 (40%), Gaps = 76/451 (16%) Query: 3 ITRFNFVPFSRKQLQVLSWWSNPQILNQEAIICDGSVRAGKTV--VMALSYILWSMTNFS 60 +++ + + F+ KQ + +++ L + +G+ R+GKT + ++YI +S++ Sbjct: 1 MSKIDELVFTPKQQETITFPFRGVTLE----VNEGTPRSGKTTADIFKMAYI-YSISEDQ 55 Query: 61 GQQFGMAGKTIGSFRRNVLRPLRSMLESEGYNV-----------YDSRSENMITISKNGH 109 + +F N + R ++ +G+ + +D ++++ S NG Sbjct: 56 NH-------LVAAF--NQEQAFRLFMDGDGFGLMHIFGNLAEMKHDEHGDHLLIHSPNGP 106 Query: 110 TNFYFIFGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWF-NCNP 168 Y+ GGK S + G++L F E+ L+ + F+ + R ++ NP Sbjct: 107 KKIYYKGGGKVN-SVGAITGMSLGTVTFLEINLLHKDFIEECFRRTFAAKNRFHLAELNP 165 Query: 169 SGPFHWFKLNWIDQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYI-----Q 223 P H + + K R H+T DNP+L R + +Y+ V + Y+ Sbjct: 166 PAPNHPVLEIFSNYEKSGRYKWRHWTAKDNPALSE---ERKQEIYNEVKHSSYLLQRDWY 222 Query: 224 GLWVMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLNPTAFLLW--------GRNH 275 G V+ +G+IY+ FD + +L + D G + T + G Sbjct: 223 GKRVLQKGIIYETFDMQKNQIPKLEGRPIEMVFFGDGGQQDATVCECYVITEHAADGHYK 282 Query: 276 GVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLG--------DIRAEMIIDPSAASFSTT 327 + V YY+SGR T K Y ++K+F+ + + IDP+ Sbjct: 283 YKFNQVASYYHSGRDTGEVKAGSTYAVEIKQFIQWCMKEYEVPVNEPVFIDPACRWLREE 342 Query: 328 LRQNGFKVRKAKNDVLD----------GIRVTQTAMNEGKIKFSMNCPN-------LFKE 370 L + G A N+ D GI Q+ ++E + + PN +E Sbjct: 343 LEKVGVDTAGADNNAHDVIGKAQGIEVGIERMQSLLSERRY-LLVEQPNDQYDHYSWLQE 401 Query: 371 LASYVWDDKAAEHGEDKPVKQHDHACDAMRY 401 + YV D+ + KPV +++HA D RY Sbjct: 402 IGMYVRDENSG-----KPVDKNNHAMDTSRY 427 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 29/303 (9%) Query: 139 EVALMPQSFVNQATARCSVTGS--------KMWFNCNPSGPFHWFKLNWIDQ-MKDKRAL 189 E A ++F +T S+ GS ++ NP HW K + D+ K Sbjct: 132 EEAYQIETFAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETKLNNTF 191 Query: 190 RIHFTMHDNPSLDSVTINRYERMYSGVFYQRYI--QGLWVMSEGVIYDNFDKDTMVVNEL 247 T N LD V I RYE +Y + I G W ++EG+++DNF + E Sbjct: 192 SDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVEDFDWFEE 251 Query: 248 PNHFEKYYVSCDYG-TLNPTAFL--LWGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCHDL 304 ++ D+G + +PT + + + ++ E+Y T D+ + Sbjct: 252 FKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKLFIYDEHYKKAMLT-----DDIKQMLI 306 Query: 305 KEFLGDIRAEMIIDPSAASFSTTLRQNGFK-VRKA---KNDVLDGIRVTQTAMNEGKIKF 360 K+ LGD+ + L+ G K +RKA N +L GI+ Q ++ Sbjct: 307 KKGLGDVDIAADYGAGGDRVISELKSKGIKGIRKALKGANTILPGIQFIQGF----EVII 362 Query: 361 SMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFV--YTIIYKKVTAKVTVR 418 +C + +E +Y +D +KP+ ++H DA+RY + Y I+ KK + + Sbjct: 363 HPSCEHAIEEFNTYTFDQDNDGKWLNKPIDANNHIIDALRYSLEKYHIVRKKRKKNIESK 422 Query: 419 PRV 421 +V Sbjct: 423 TKV 425 >gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238487;genbank:gi:66391763;genbank:GeneID :5176917 Length = 195 Score = 56.2 bits (134), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 13/183 (7%) Query: 226 WVMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEY 284 W ++EG IY ++D VV+ELP ++ + D+G + + ++ G G +YL+ Sbjct: 3 WTVAEGAIYADYDSKIHVVDELP-EMKRCFGGIDWGYTHYGSIVVVGEGVDGNFYLLD-- 59 Query: 285 YYSGRTTSRQKTDEEYCHDLKEFLGDIR-AEMIIDPSAASFSTTLRQNGFKVRKAKNDVL 343 ++ K + + ++ G R D + GF + A V+ Sbjct: 60 ----GVAAQFKEIDWWVEQARKLTGIYRNIPFYADSARPEHVARFESEGFDISNANKSVI 115 Query: 344 DGIRVTQTAMNEGKIKFSMN-CPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYF 402 GI + E K+ P F E+ Y W + + +D+P+K+ D D++RY Sbjct: 116 AGIELIAKLFKEEKLYVKRGFVPRFFDEIYQYRWKENST---KDEPLKEFDDVLDSVRYA 172 Query: 403 VYT 405 +Y+ Sbjct: 173 IYS 175 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 92/400 (23%), Positives = 165/400 (41%), Gaps = 60/400 (15%) Query: 53 LWSMTNFSGQQFGMA--GKTIGSFRRNVLRPLRS---------MLESEGYNVYDSRSENM 101 L++ +NF+ +G A GK+ G F++ +L+ L +L G V DS ++ Sbjct: 28 LYNYSNFTEVHYGGASSGKSHGVFQKIILKALNPKFKHPRKILVLRKVGATVRDSVFADI 87 Query: 102 IT------ISKNGHTNFY-----------FIFGGKDEASQ-DLVQGITLAGFFFDEVALM 143 ++ I N FIF G D + ++GI+ +E + Sbjct: 88 MSNLSYFGILDKCKINMSAFRITLPNGAEFIFKGMDNPEKIKSIKGIS--DVVMEEASEF 145 Query: 144 PQSFVNQATARCSVTG---SKMWFNCNPSGPFHW-FKLNWIDQMKDKRALRIHFTMHDNP 199 Q T R +++ NP +W +K ++ K+ + T DN Sbjct: 146 TLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKVNWVYKAFFVKTPKN--TVVYQTTYKDNR 203 Query: 200 SLDSVTINRYERMYS--GVFYQRYIQGLWVMSEGVIYDNFDKDTMVVNELPNHFEKYYVS 257 LD VT E + + +Y+ Y G + + +I+ +DK + ++L +H ++ Sbjct: 204 FLDDVTRENIEELANRNEAYYKIYALGQFATLDKLIFPKYDKQILNKDKL-SHLPSFF-G 261 Query: 258 CDYGTLNPTAFLLWGR---NHGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAE 314 DYG +N + LL + + Y+++EY + T+++ + +K+ LG + E Sbjct: 262 LDYGFINDPSALLHVKIDDANKKLYILEEY------VRKNLTNDKIANAIKD-LGYAKEE 314 Query: 315 MIIDPSAASFSTTLRQNGF----KVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKE 370 + D + + LR G V K V+ GI Q + I C +E Sbjct: 315 IRGDSAEKKSNQELRNLGIPRMIDVTKGPGTVMQGI---QYLLQYDWI-VDERCVKTIEE 370 Query: 371 LASYVWD-DKAAEHGEDKPVKQHDHACDAMRYFVYTIIYK 409 L +Y W DK ++PV ++H DA+RY V IY+ Sbjct: 371 LENYTWKKDKKTNEYTNEPVDSYNHCIDAIRYAVQDRIYQ 410 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 52.8 bits (125), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 31/323 (9%) Query: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 133 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPV 190 Query: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 191 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 250 Query: 227 VMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYLVKE 283 + +++ ++K + +EL H Y+ D+G +N P+AF+ Y+++E Sbjct: 251 ATLDKLVFPKYEKRLINKDEL-RHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 308 Query: 284 YYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAK 339 Y G ++E + +K+ LG R E+ D + LR G K +K K Sbjct: 309 YVKQGML------NDEIANVIKQ-LGYAREEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHACDA 398 V+ G++ + + +I C +E +Y W DK ++PV ++H D+ Sbjct: 362 GSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDS 417 Query: 399 MRYFVYTIIYKKVTAKVTVRPRV 421 +RY V Y+ V + + +V Sbjct: 418 LRYSVER-FYRPVRKRTNLSSKV 439 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 52.4 bits (124), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 65/304 (21%), Positives = 114/304 (37%), Gaps = 38/304 (12%) Query: 121 EASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWI 180 E SQD G + + DE P+ Q R + TG ++ P +++ Sbjct: 158 EMSQDKFMGTAIDVIWLDEEC--PKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL 215 Query: 181 DQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKD 240 +K + L IH + D P L + +YS + +G+ ++ GV++ ++ Sbjct: 216 QDLKPGQFL-IHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGIPMLGSGVVFPILEEK 274 Query: 241 TMVVN-ELPNHFEKYYVSCDYGTLNPTAF--LLWGRNHGVWYLVKEYYYSGRTTSRQK-- 295 + ++P+HF + + D G +P A + W +YL E SG T Sbjct: 275 FVCEPFDIPDHFHR-IIGIDLGFDHPNAIACVAWDAEKDKYYLYDERSESGETLGMHADA 333 Query: 296 -------------TDEEYCHD----LKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKA 338 + + HD + F+ ++ + ++ FS +G + Sbjct: 334 IYLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDG---KHG 390 Query: 339 KNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGED-KPVKQHDHACD 397 N V G+ T M G +K C N KE+ Y H +D K V ++D Sbjct: 391 GNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMY--------HRKDGKIVDRNDDMIS 442 Query: 398 AMRY 401 A RY Sbjct: 443 ATRY 446 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 31/323 (9%) Query: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 111 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPV 168 Query: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 169 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 228 Query: 227 VMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYLVKE 283 + +++ ++K + +EL H Y+ D+G +N P+AF+ Y+++E Sbjct: 229 ATLDKLVFPKYEKRLINKDEL-RHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 286 Query: 284 YYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAK 339 Y G ++E + +K+ LG + E+ D + LR G K +K K Sbjct: 287 YVKQGML------NDEIANVIKQ-LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 339 Query: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHACDA 398 V+ G++ + + +I C +E +Y W DK ++PV ++H D+ Sbjct: 340 GSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDS 395 Query: 399 MRYFVYTIIYKKVTAKVTVRPRV 421 +RY V Y+ V + V +V Sbjct: 396 LRYSVER-FYRPVRKRTNVSSKV 417 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 19/267 (7%) Query: 167 NPSGPFHWFKLNWID-QMKDKRALRIHFTMHDNPSLDSVTINRYERMY--SGVFYQRYIQ 223 NP HW K + D + K + I T DN L++ ++ + M + + + Sbjct: 179 NPWSDRHWLKHEFFDDKTKRNHSRAITTTYKDNDHLNADYVDSLKEMLVRNPNRARVAVL 238 Query: 224 GLWVMSEGVIYDN-FDKDTMVVNELPNHFEKYYVSCDYG-TLNPTA--FLLWGRNHGVWY 279 G W ++EG+++D F++ +E+ N + V D+G +PTA F+ +++ + Y Sbjct: 239 GEWGIAEGLVFDGLFEQRDFSYDEIANLPKS--VGLDFGFKHDPTAGEFIAVDQDNRIVY 296 Query: 280 LVKEYYYSGRTTSR--QKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRK 337 + E+Y T++ Q+ + L MI++ S ++ +G K Sbjct: 297 IYDEFYKQHLLTNQIAQELAKHKAFGLPITADSAEQRMIVELSQQHRVPNIKPSG----K 352 Query: 338 AKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACD 397 K+ V+ GI+ Q+ + L +E +YV+D + +KP ++HA D Sbjct: 353 GKDSVIQGIQYMQSY----RFVVHPRVKGLMEEFNTYVYDMDKEGNWLNKPKDANNHAID 408 Query: 398 AMRYFVYTIIYKKVTAKVTVRPRVRGL 424 A+RY + ++ + + + RV L Sbjct: 409 ALRYALEKYMFVRAGHYMNYQERVSTL 435 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 31/323 (9%) Query: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 111 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLIFNPV 168 Query: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 169 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 228 Query: 227 VMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYLVKE 283 + +++ ++K + +EL H Y+ D+G +N P+AF+ Y+++E Sbjct: 229 ATLDKLVFPKYEKRLINKDEL-RHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 286 Query: 284 YYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAK 339 Y G ++E + +K+ LG + E+ D + LR G K +K K Sbjct: 287 YVKQGML------NDEIANVIKQ-LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 339 Query: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHACDA 398 V+ G++ + + +I C +E +Y W DK ++PV ++H D+ Sbjct: 340 GSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDS 395 Query: 399 MRYFVYTIIYKKVTAKVTVRPRV 421 +RY V Y+ V + V +V Sbjct: 396 LRYSVER-FYRPVRKRTNVSSKV 417 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 31/323 (9%) Query: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 133 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPV 190 Query: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 191 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 250 Query: 227 VMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYLVKE 283 + +++ ++K + +EL H Y+ D+G +N P+AF+ Y+++E Sbjct: 251 STLDKLVFPKYEKRLINKDEL-RHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 308 Query: 284 YYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAK 339 Y G ++E + +K+ LG + E+ D + LR G K +K K Sbjct: 309 YVKQGML------NDEIANVIKQ-LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHACDA 398 V+ G++ + + +I C +E +Y W DK ++PV ++H D+ Sbjct: 362 GSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDS 417 Query: 399 MRYFVYTIIYKKVTAKVTVRPRV 421 +RY V Y+ V + V +V Sbjct: 418 LRYSVER-FYRPVRKRTNVSSKV 439 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 31/323 (9%) Query: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 133 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPV 190 Query: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 191 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 250 Query: 227 VMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYLVKE 283 + +++ ++K + +EL H Y+ D+G +N P+AF+ Y+++E Sbjct: 251 STLDKLVFPKYEKRLINKDEL-RHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 308 Query: 284 YYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAK 339 Y G ++E + +K+ LG + E+ D + LR G K +K K Sbjct: 309 YVKQGML------NDEIANVIKQ-LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHACDA 398 V+ G++ + + +I C +E +Y W DK ++PV ++H D+ Sbjct: 362 GSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDS 417 Query: 399 MRYFVYTIIYKKVTAKVTVRPRV 421 +RY V Y+ V + V +V Sbjct: 418 LRYSVER-FYRPVRKRTNVSSKV 439 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 51.2 bits (121), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/323 (21%), Positives = 135/323 (41%), Gaps = 31/323 (9%) Query: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 133 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPV 190 Query: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 191 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 250 Query: 227 VMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYLVKE 283 + +++ ++K + +EL H Y+ D+G +N P+AF+ Y+++E Sbjct: 251 ATLDKLVFPKYEKRLINKDEL-RHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 308 Query: 284 YYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAK 339 Y G ++E + +K+ LG + E+ D + LR G K +K K Sbjct: 309 YVKQGML------NDEIANVIKQ-LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 361 Query: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHACDA 398 V+ G++ + + +I C +E +Y W DK ++PV ++H D+ Sbjct: 362 GSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDS 417 Query: 399 MRYFVYTIIYKKVTAKVTVRPRV 421 +RY V Y+ V + + +V Sbjct: 418 LRYSVER-FYRPVRKRTNLSSKV 439 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 49.3 bits (116), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 75/329 (22%), Positives = 135/329 (41%), Gaps = 42/329 (12%) Query: 96 SRSENMITISKNGHTNFYFIFGGKDEASQDLVQGIT-LAGFFFDEVALMPQSFVNQATAR 154 +RS+ I + NG F+F G D+ + ++ I L+ +E + + Q T R Sbjct: 97 NRSDKTIVLP-NGAI---FLFQGMDDPEK--IKSIKGLSDVVMEEASEFNHNDYTQLTLR 150 Query: 155 CSVTGSK---MWFNCNPSGPFHWFKLNWIDQMKDKRALRIHF---TMHDNPSLDSVTINR 208 K ++ NP +W W D D R+ T DN LD I Sbjct: 151 LREPKHKQRQIFCMFNPVSKLNWTYQTWFDPSADYDRSRVAIHQSTYKDNRFLDEDNIRT 210 Query: 209 YERM--YSGVFYQRYIQGLWVMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-P 265 E + + +Y+ Y G + + +++ F+ + + Y DYG +N P Sbjct: 211 IEELKNTNPAYYKIYTLGEFATLDKLVFPYFETKRLNPRDPKLLALNDYFGLDYGFINDP 270 Query: 266 TAFL---LWGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDI--RAEMIIDPS 320 +AF+ L RN + Y++ E+ G ++ L + + D+ E+I S Sbjct: 271 SAFMHIKLDMRNKTL-YVMDEFVKKGLLNNQ----------LAQVIKDMGYSKEVITADS 319 Query: 321 AA--SFSTTLRQNGFKVR---KAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYV 375 A S + R +++R K + ++ GI+ Q + K C +EL +Y Sbjct: 320 AEKKSIAEMKRDGIYRIRPALKGPDSIIQGIQFLQ----QFKWVVDDRCVKTIEELQNYT 375 Query: 376 W-DDKAAEHGEDKPVKQHDHACDAMRYFV 403 + DK + ++P+ ++H DA+RY V Sbjct: 376 YVKDKKTDEYTNRPIDAYNHCIDAIRYAV 404 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 48.1 bits (113), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 28/243 (11%) Query: 177 LNWIDQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRY-IQGLWVMSEGVIYD 235 L W DQM+ A H T+ LD + R + G + + G + +EG++YD Sbjct: 202 LPWADQMEVVVASTEHNTLLPPDGLDKI-----RRQFKGTAREEQGLHGGFAAAEGLVYD 256 Query: 236 NFDKDTMVVN------ELPNHFEKYYVSCDYGTLNPTAFLLWGRNHGVWYLVKEYYYSGR 289 F + T V + L + + Y D G +P L + H ++V + +Y Sbjct: 257 AFTRQTHVRDADDVRDRLADDWAMY--GYDAGWNDPRVLLDIRKTHAGQFVVWDQFYKSE 314 Query: 290 TTSRQ--KTDEEYCHDLKEFL-GDIRAEMIIDPSAASFSTTLRQN--GFKVRKAKNDVLD 344 + + D+ D+ +L G R + + A + N K K+ + +D Sbjct: 315 SHLAELVDPDDALPADVDPWLAGRPRGRVYAEHEPAHIEQFRKANWPAVKAEKSLDGGID 374 Query: 345 GIRVTQTAMNEGK--IKFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYF 402 +R +EG+ + + C L +E SY D K DHA DA+RY Sbjct: 375 HVRSRLAMDDEGRPGVLVTDRCGELIQEFLSYKEDHVGTS-------KAQDHALDALRYA 427 Query: 403 VYT 405 ++T Sbjct: 428 LFT 430 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 46.2 bits (108), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 27/253 (10%) Query: 161 KMWFNCNPSGPFHWFKLNWIDQMKDKRALRIHFTMHDNPSLDSVTINRYE--RMYSGVFY 218 +M F NP HW K + D K+ H T N +D R + + Y Sbjct: 169 QMTFTFNPVSATHWIKRKYFD-YKNDDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGY 227 Query: 219 QRYIQGLWVMSEGVIYDNFDKDTMVVNELP---NHFEKYYVSCDYGTLNPTAFLLWGRNH 275 + Y G W + G I N+ V++E P +F+ +S D+G + L G Sbjct: 228 KVYGLGEWGETGGAILKNY-----VIHEFPTESEYFDNMRLSQDFGFNHANVVLRIGFKD 282 Query: 276 GVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAE----MIIDPSAASFSTTLRQN 331 G Y+ E Y TS ++ + I E M D + + Sbjct: 283 GELYICNEIYAHEMDTS----------EIIKIANSIGLEKTLFMYCDSAEPDRIKMWKSA 332 Query: 332 GFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVW-DDKAAEHGEDKPVK 390 G+K + K ++ + + +I +C N KE+ + W D+ D+PV+ Sbjct: 333 GYKAKGVKKGP-GSVKAQIDYLKQLRIHVHPSCTNTIKEIQQWKWKQDERTGLYLDEPVE 391 Query: 391 QHDHACDAMRYFV 403 D A A+RY + Sbjct: 392 FMDDAMAALRYSI 404 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 45.1 bits (105), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/315 (20%), Positives = 129/315 (40%), Gaps = 36/315 (11%) Query: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 133 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPV 190 Query: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 191 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 250 Query: 227 VMSEGVIYDNFDKDTMV---VNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYL 280 + +++ ++K + V LP++F D+G +N P+AF+ ++ Y+ Sbjct: 251 ATLDKLVFPKYEKRIISDKEVGHLPSYF-----GLDFGYVNDPSAFIHVKIDNDNKKLYV 305 Query: 281 VKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VR 336 + EY G + E + + LG + ++ D + ++ NG Sbjct: 306 ISEYVKKGMLNN------EIAQVIND-LGYSKEKITADSAEQKSIMEIKTNGIDRIVPAM 358 Query: 337 KAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHA 395 K K+ V+ GI+ +++ I C +E +Y W DK ++PV ++H Sbjct: 359 KGKDSVMAGIQF----VSQFDIVIDERCYKTIEEFDNYTWKKDKNTGEYYNEPVDTYNHC 414 Query: 396 CDAMRYFVYTIIYKK 410 DA+RY V + +K Sbjct: 415 IDALRYAVEVLTIQK 429 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 44.7 bits (104), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 40/218 (18%) Query: 185 DKRALRIHFTMHDNPSLDSVTINRYERMY--SGVF----------YQRYIQGLWVMSEGV 232 D R+ + M +NP S I + ER+ SGV + + I + G Sbjct: 259 DAHVKRLMYLMAENPGYTSFEIAKSERLQIDSGVLQLANDQTIPEFNQEIAAEFTDFVGK 318 Query: 233 IYDNFDKDTMVVNEL---PNHFEKYYVSCDYGTLNPTAFLL-----WGRNHGVWYLVKEY 284 ++ +D+DT V EL P+ + + DYG NP +LL WG + +V E Sbjct: 319 VFKEYDEDTH-VRELVYNPSQDWETIAAVDYGYRNPNVWLLIQIGPWGEIN----IVDEL 373 Query: 285 YYSGRTTSRQKTDEEYCHDL--KEFLGDIRAEMIIDPSAASFSTTL----RQNGFKVRKA 338 Y + T + E+ +++ + D DP+A S TL RQ+G + R Sbjct: 374 YQADLTPT------EFANEILRRGLCPDTLHSFYADPAAPEASRTLETIFRQHGKRARSR 427 Query: 339 KN---DVLDGIRVTQTAMNEGKIKFSMNCPNLFKELAS 373 + D+ + + + + A+ + + M+ P+ F+ AS Sbjct: 428 PHTGGDIDNRLNLIRFALKDRIVDAEMSAPSWFQAGAS 465 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 44.7 bits (104), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 31/268 (11%) Query: 167 NPSGPFHWFKLNWIDQMKDKRALRIHFTMHD-NPSLDSVTINRYERMYSGVFYQRYI--Q 223 NP HW K + D+ K+ + T + N LD I+RYE ++ + + Sbjct: 172 NPWSERHWLKSAFFDEDTRKKDVFADTTTYRVNEWLDQQDIDRYEDLWRTNPRRAAVVAN 231 Query: 224 GLWVMSEGVIYDNFD-KDTMVVNELPNHFEKYYVSCDYG-TLNPTAF--LLWGRNHGVWY 279 G W ++EG++++N++ KD +V+ + E D+G T +PT F L + Sbjct: 232 GDWGVAEGLVFENYEVKDFDIVSTIKRIGETT-AGLDFGFTHDPTTFPRLAVDLEKKELW 290 Query: 280 LVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDI---RAEMIIDPSAASFSTTLRQNGFKVR 336 + E+Y TT D+ + + D A + D + L+ G + Sbjct: 291 IYAEHYEHAMTTD----------DIFKMIVDADMQNAVITADSAEQRLIAELQAKGIRRL 340 Query: 337 ----KAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGEDKPVKQH 392 K K + GI M + KI +C +E +Y++ ++P+ + Sbjct: 341 VPSIKGKGSINAGIDF----MKQFKIYIHPSCIKTIEEFDTYIYKQDKDGKWLNEPIDSN 396 Query: 393 DHACDAMRYFV--YTIIYKKVTAKVTVR 418 +H DA+RY + Y I K+ T++ Sbjct: 397 NHIIDAIRYALERYHIQTSKLDVDKTIK 424 >gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463463;swissprot:trembl:q9t1c1;genbank:gi :16798785;goa:Q9T1C1;uniprot:Q9T1C1;genbank:GeneID:92238 4 Length = 443 Score = 41.2 bits (95), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 13/136 (9%) Query: 280 LVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTT---LRQNGFKVR 336 L+ YYYS +K EY +L++F+ + + + + LR +K Sbjct: 298 LLNTYYYSPANQVVKKAPSEYSKELRDFMTKVVGNYNTNVDMQTVDSAEGGLRNQYYKDY 357 Query: 337 K------AKNDVLDGIRVTQTAMNEGKIKFSMNCPN---LFKELASYVWDDKAAEHGEDK 387 AK +D I + +G+ + ++ P +E Y WD K + + Sbjct: 358 GVSLHPVAKGKKVDMIDFVCDLLAQGRF-YYLDIPENQIFIEEHRKYQWDVKTINTDKPE 416 Query: 388 PVKQHDHACDAMRYFV 403 VK+ DH CDA +Y+V Sbjct: 417 VVKEDDHTCDAFQYYV 432 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 40.8 bits (94), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 13/136 (9%) Query: 280 LVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIRAE-------MIIDPSAASFSTTLRQN- 331 L+ YYYS +K +Y +L+EF+ + ++ +D + ++ Sbjct: 298 LLDTYYYSPANQVVKKAPSDYSKELREFMTKVVSKYNAPVDMQTVDSAEGGLRNQYYKDY 357 Query: 332 GFKVRK-AKNDVLDGIRVTQTAMNEGKIKFSMNCPN---LFKELASYVWDDKAAEHGEDK 387 G + AK +D + + +G+ + ++ P +E Y WD K + + Sbjct: 358 GVSLHPVAKGKKVDMVDFVCDLLAQGRF-YYLDIPENQIFIEEHRKYQWDVKTVNTDKPE 416 Query: 388 PVKQHDHACDAMRYFV 403 +K+ DH CDA +Y+V Sbjct: 417 VIKEDDHTCDAFQYYV 432 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 25/193 (12%) Query: 223 QGLWVMSEGVIYDNFDKDTMVVN--ELPNHFEKYYVSC-DYGTLNPTAF--LLWGRNHGV 277 +G+ M G I+ ++T+ E P+HF Y + D+G +P A L W ++ V Sbjct: 303 RGIPTMGSGRIF-QIPEETIKCQPFECPDHF--YVIDAQDFGWNHPQAHIQLWWDKDADV 359 Query: 278 WYLVKEYYYSGRTTSR---------QKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTL 328 +YL + + S T + K + HD + ++ + A FS Sbjct: 360 FYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLP 419 Query: 329 RQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGEDKP 388 F N V GI + M EG+ K C F+E Y D+ K Sbjct: 420 EHATFP--DGGNSVESGIGELRDLMLEGRFKVFNTCEPFFEEFRLYHRDENG------KI 471 Query: 389 VKQHDHACDAMRY 401 VK +D DA RY Sbjct: 472 VKTNDDVLDATRY 484 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 37.7 bits (86), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 25/193 (12%) Query: 223 QGLWVMSEGVIYDNFDKDTMVVN--ELPNHFEKYYVSC-DYGTLNPTAF--LLWGRNHGV 277 +G+ M G I+ ++T+ E P+HF Y + D+G +P A L W ++ V Sbjct: 285 RGIPTMGSGRIF-QIPEETIKCQPFECPDHF--YVIDAQDFGWNHPQAHIQLWWDKDADV 341 Query: 278 WYLVKEYYYSGRTTSR---------QKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTL 328 +YL + + S T + K + HD + ++ + A FS Sbjct: 342 FYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLP 401 Query: 329 RQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGEDKP 388 F N V GI + M EG+ K C F+E Y D+ K Sbjct: 402 DHATFP--DGGNSVESGISELRDLMLEGRFKVFNTCEPFFEEFRLYHRDENG------KI 453 Query: 389 VKQHDHACDAMRY 401 VK +D DA RY Sbjct: 454 VKTNDDVLDATRY 466 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 37.0 bits (84), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 25/193 (12%) Query: 223 QGLWVMSEGVIYDNFDKDTMVVN--ELPNHFEKYYVSC-DYGTLNPTAF--LLWGRNHGV 277 +G+ M G I+ ++T+ E P+HF Y + D+G +P A L W ++ V Sbjct: 285 RGIPTMGSGRIF-QIPEETIKCQPFECPDHF--YVIDAQDFGWNHPQAHIQLWWDKDADV 341 Query: 278 WYLVKEYYYSGRTTSR---------QKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTL 328 +YL + + S T + K + HD + ++ + A FS Sbjct: 342 FYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLP 401 Query: 329 RQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGEDKP 388 F N V GI + M EG+ K C F+E Y D+ K Sbjct: 402 DHATFP--DGGNSVESGISELRDLMLEGRFKAFNTCEPFFEEFRLYHRDENG------KI 453 Query: 389 VKQHDHACDAMRY 401 VK +D DA RY Sbjct: 454 VKTNDDVLDATRY 466 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 37.0 bits (84), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 100/280 (35%), Gaps = 51/280 (18%) Query: 163 WFNCNPSGPFHWFKLNWIDQMKDKRALRIHFTMHDNPSLDSVT---INRYERMYSGVF-Y 218 W P P+HW W D+M + +H + + + L VT + ER+ + Y Sbjct: 173 WSYNPPRNPYHWIN-EWADKMVGEEDYLVHESSYLDDQLGFVTGQMLKDIERIKNNDHDY 231 Query: 219 QRYI---------QGLWVMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYG-TLNPTAF 268 RYI ++ M+ D D V+ + S D G + TA Sbjct: 232 YRYIYLGEPVGLGTNVYNMNLFKPLDQLPSDDRVI--------ALFYSVDGGHAHSATAC 283 Query: 269 LLWGRN-HGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFL-----------GDIRAEMI 316 +G G + YYYS R+K E DL +F+ I+ I Sbjct: 284 GFYGLTARGKVIRLNTYYYSPAGRVRKKAPSELSKDLHDFVTATAKQEYWKGARIQKRTI 343 Query: 317 IDPSAA---SFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMN--------CP 365 D AA + Q V K K +D I + +G+ + N C Sbjct: 344 DDAEAAIRNQYYADYGQYWLPVGKKKK--IDMIDYVHDLLAQGRFYYLTNPYPTGLEHCD 401 Query: 366 N---LFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYF 402 + +E Y +D+K + K +K+ DH D +YF Sbjct: 402 SNDIFIEEHKKYQFDEKTLNSDDPKVIKEDDHTVDEFQYF 441 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 350 QTAMNEGKIKFSMNCPN---LFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFV 403 Q+ + +G+ + +N N +E Y WD+K + +K+ DH CD +YFV Sbjct: 367 QSLLAQGRF-YYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 346 IRVTQTAMNEGKIKFSMNCPN--LFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFV 403 I Q + G+ + N N E Y WD E + K +K DH CDA +YFV Sbjct: 377 IDHVQDLLATGRFYYLDNKANQIFIDEHRKYQWDGDTLESDKPKVIKVDDHTCDAFQYFV 436 >gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655387;genbank:gi:109522575;genbank:GeneI D:4157565 Length = 588 Score = 33.5 bits (75), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 65/197 (32%) Query: 248 PNHFEKYYVSCDYGTLNPTAFLL-----WGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCH 302 PN+ + Y + DYG NP +L+ WG + +++E Y G T Sbjct: 348 PNY--ETYAAADYGYTNPNVWLVIQIGKWGEVN----VLREIYMPGLTAD---------- 391 Query: 303 DLKEFLGDIRAEMI---------IDPSAASFSTTLRQN-GFK------------------ 334 F +IR +M DP+ S TL Q G + Sbjct: 392 ---AFADEIRRQMCNPPNLRIFYPDPADPMSSETLSQKLGIRAAGGTGGEKRIRLNLIRQ 448 Query: 335 -VRKAKNDVLDGIRVTQTAMN-EGKIKFSMNCPNLFKELASYVWDDKAAEHGE-----DK 387 +++ +ND D T M ++ F +C N +E+ +Y + D + ++ Sbjct: 449 FLKRGRNDPTD-----LTGMGWRPQLMFDRSCANARREMEAYRYPDSTDKPNPSSLIYEE 503 Query: 388 PVKQHDHACDAM-RYFV 403 P+K+ DH +A+ R+FV Sbjct: 504 PLKKDDHVPEALGRFFV 520 >gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655204;genbank:gi:109522784;genbank:GeneI D:4157477 Length = 588 Score = 33.5 bits (75), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 65/197 (32%) Query: 248 PNHFEKYYVSCDYGTLNPTAFLL-----WGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCH 302 PN+ + Y + DYG NP +L+ WG + +++E Y G T Sbjct: 348 PNY--ETYAAADYGYTNPNVWLVIQIGKWGEVN----VLREIYMPGLTAD---------- 391 Query: 303 DLKEFLGDIRAEMI---------IDPSAASFSTTLRQN-GFK------------------ 334 F +IR +M DP+ S TL Q G + Sbjct: 392 ---AFADEIRRQMCNPPNLRIFYPDPADPMSSETLSQKLGIRAAGGTGGEKRIRLNLIRQ 448 Query: 335 -VRKAKNDVLDGIRVTQTAMN-EGKIKFSMNCPNLFKELASYVWDDKAAEHGE-----DK 387 +++ +ND D T M ++ F +C N +E+ +Y + D + ++ Sbjct: 449 FLKRGRNDPTD-----LTGMGWRPQLMFDRSCANARREMEAYRYPDSTDKPNPSSLIYEE 503 Query: 388 PVKQHDHACDAM-RYFV 403 P+K+ DH +A+ R+FV Sbjct: 504 PLKKDDHVPEALGRFFV 520 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 33.1 bits (74), Expect = 0.006, Method: Compositional matrix adjust. Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 24/276 (8%) Query: 146 SFVNQATARCSVTG-SKMWFNCNPSG-PFHWFKLNWIDQMKDKRALRIH------FTMHD 197 S VN + R TG S+ ++ NP HW NW+D ++D+ + +H +H Sbjct: 168 SIVNSSYMRGEGTGDSRAFYLYNPPKYKGHWLN-NWVDVIRDEPSQYVHHSTFIPIALHH 226 Query: 198 NPSLDSVTIN--RYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKDTMVVNELPNHFEKYY 255 L S + R R + Y+ G V + ++ N ++ + + + + Y Sbjct: 227 PEWLGSTWLESARLVRDKNPNRYEWEFLGRNVNTGNEVFPNAVQEHITFDMIDGL--RPY 284 Query: 256 VSCDYG-TLNPTAFL--LWGRNHGVWYLVKEYYYSGRTTSRQKTDEEYCHDLKEFLGDIR 312 D G T +P+ +L + Y+ E T D +++E +I Sbjct: 285 EGFDEGYTADPSVWLRVFYDEQRDTVYITDELVMKRYKTKALAKD---ILNVQEGSYNIV 341 Query: 313 AEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELA 372 +P L N V K+ N V G T N KI CPN ++E + Sbjct: 342 RGDSANPRVLDEMRDLGVNALAVSKSPNSVPHG---TNWLANRIKIVIDFKCPNTWREFS 398 Query: 373 SY-VWDDKAAEHGEDKPVKQHDHACDAMRYFVYTII 407 SY + D P K +H D RY + +I Sbjct: 399 SYALLPDGVGNRKHGFPDKD-NHTIDTTRYALEEVI 433 >gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: putative phage terminase large subunit # Family: family:all:144 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239275;genbank:gi:66392134;genbank:GeneID :5076615 Length = 473 Score = 32.7 bits (73), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 19/134 (14%) Query: 161 KMWFNCNPSG-PFHWFKLNWID---------QMKDKRALR--IHFTMHDNPSL---DSVT 205 ++ + NP G H+FK N++D + LR I + DN + D Sbjct: 162 RILYTANPGGVGHHYFKSNFVDIGSGHVFQAPEDEGSMLREYIPAKLEDNKVMMETDPDY 221 Query: 206 INRYERMYSGVFYQRYIQGLW-VMSEGVIYDNFDKDTMVVN--ELPNHFEKYYVSCDYGT 262 R + M Q ++G W V+S G I D + VV+ ++P H K DYG+ Sbjct: 222 RARLKGMGDSATVQAMLEGDWEVVSAGGIADLWRSKIHVVHPFKIP-HTWKIDRGYDYGS 280 Query: 263 LNPTAFLLWGRNHG 276 P A+LL+ + G Sbjct: 281 SKPAAYLLFAESDG 294 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 31.2 bits (69), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 118 GKDEASQDLVQGITLAGFFFDEVALMPQ---SFVNQATARCSVTGSKMWFNCNPSGPFHW 174 G +S D V+G + A + DEVA +P +++ S SK+ P+G HW Sbjct: 225 GAFSSSPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSGRHSKILMTTTPNGLNHW 284 Query: 175 FKL 177 + + Sbjct: 285 YDI 287 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 30.8 bits (68), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Query: 118 GKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTG----SKMWFNCNPSGPFH 173 G +S D V+G + A + DEVA +P +F + A V SK+ P+G H Sbjct: 226 GAFSSSPDAVRGNSFALIYVDEVAFIP-NFTDAWMAIQPVISSGRRSKILMTTTPNGLNH 284 Query: 174 WFKL 177 W+ + Sbjct: 285 WYDI 288 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 30.8 bits (68), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Query: 118 GKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTG----SKMWFNCNPSGPFH 173 G +S D V+G + A + DEVA +P +F + A V SK+ P+G H Sbjct: 226 GAFSSSPDAVRGNSFALIYVDEVAFIP-NFTDAWMAIQPVISSGRRSKILMTTTPNGLNH 284 Query: 174 WFKL 177 W+ + Sbjct: 285 WYDI 288 >gi|9590|lcl|protein:vir:97250 Length: 515 # NCBI annotation: hypothetical protein ORF012 # Family: family:all:144 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294520;genbank:gi:149408241;genbank:Ge neID:5237115 Length = 515 Score = 30.4 bits (67), Expect = 0.043, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 43/234 (18%) Query: 167 NPSGPFH-WFKLNW----------IDQMKDKRA----LRIHFTMHDNPSLDSVTINRYER 211 NP GP H W K + +D M+D + IH ++++N L + Sbjct: 203 NPYGPGHNWVKARFRLPHMRGRVILDAMRDGEREPPRVAIHGSIYENQILLHADPEYISK 262 Query: 212 MYSGVF----YQRYIQGLWVMSEGVIYDN-FDKDTMVVNELP----NHFEKYYVSCDYGT 262 + + ++ G W + G ++D+ + D VV +P K S D+G+ Sbjct: 263 IRAAARNPSELAAWLHGSWDIIAGGMFDDIYRGDVHVVPSVPLSVIPKRWKIDRSFDWGS 322 Query: 263 LNPTAFLLW---------------GRNHGVWYLVKEYY-YSG-RTTSRQKTDEEYCHDLK 305 P A L W G+ G YL++E+Y ++G R + E +K Sbjct: 323 SKPFAVLWWAESNGEPFEWNGRVYGKVRGDLYLIQEWYGWNGTRNEGVRMLASEVAQGVK 382 Query: 306 EFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVTQTAMNEGKIK 359 + D E + P A S +NG + A + G+R T G K Sbjct: 383 DREEDWALEGRVKPGPADSSIFDVENGNSI--AVDMEKKGVRWTPADKGPGSRK 434 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 26.9 bits (58), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Query: 118 GKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTG----SKMWFNCNPSGPFH 173 G +S D V+G + A + DE A +P +F++ A V SK+ P+G H Sbjct: 235 GAYASSPDAVRGNSFAMIYIDECAFIP-NFIDSWLAIQPVISSGRRSKIIITTTPNGLNH 293 Query: 174 WFKL 177 ++ + Sbjct: 294 FYDI 297 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 26.2 bits (56), Expect = 0.69, Method: Compositional matrix adjust. Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 19/179 (10%) Query: 3 ITRFNFVPFSRKQLQVLSWWSNPQILNQEAIICDGSVRAGKTVVMALSYILWSMTNFSGQ 62 + + + R L+++S ++ +C+ S + GKT V+A+ + N Sbjct: 134 VIKVQLRDYQRDMLKIMS--------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKA 185 Query: 63 QFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSE-NMITISKNGHTNFYFIFGGKDE 121 +A K GS VL + +E + E N +I + ++ G Sbjct: 186 VGILAHK--GSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSI-----GAYA 238 Query: 122 ASQDLVQGITLAGFFFDEVALMP---QSFVNQATARCSVTGSKMWFNCNPSGPFHWFKL 177 +S D V+G + A + DE A +P S++ S SK+ P+G H++ + Sbjct: 239 SSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDI 297 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 26.2 bits (56), Expect = 0.71, Method: Compositional matrix adjust. Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 19/179 (10%) Query: 3 ITRFNFVPFSRKQLQVLSWWSNPQILNQEAIICDGSVRAGKTVVMALSYILWSMTNFSGQ 62 + + + R L+++S ++ +C+ S + GKT V+A+ + N Sbjct: 134 VIKVQLRDYQRDMLKIMS--------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKA 185 Query: 63 QFGMAGKTIGSFRRNVLRPLRSMLESEGYNVYDSRSE-NMITISKNGHTNFYFIFGGKDE 121 +A K GS VL + +E + E N +I + ++ G Sbjct: 186 VGILAHK--GSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSI-----GAYA 238 Query: 122 ASQDLVQGITLAGFFFDEVALMP---QSFVNQATARCSVTGSKMWFNCNPSGPFHWFKL 177 +S D V+G + A + DE A +P S++ S SK+ P+G H++ + Sbjct: 239 SSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDI 297 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 26.2 bits (56), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Query: 118 GKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTG----SKMWFNCNPSGPFH 173 G +S D V+G + A + DE A +P +F++ A V SK+ P+G H Sbjct: 235 GAYASSPDAVRGNSFAMIYIDECAFIP-NFLDSWLAIQPVISSGRRSKIIITTTPNGLNH 293 Query: 174 WFKL 177 ++ + Sbjct: 294 FYDI 297 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 118 GKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTG----SKMWFNCNPSGPFH 173 G +S D V+G + A + DE A +P +F + A V SK+ P+G H Sbjct: 233 GAFASSPDAVRGNSFAMIYIDECAFIP-NFTDAWLAIQPVISSGRKSKILITTTPNGLNH 291 Query: 174 WFKL 177 ++ + Sbjct: 292 FYDI 295 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 116 FGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQAT-ARCSVTGSKMWFNCNPSGPFHW 174 F GK D ++G TL DE A++P S ++A SV P G +W Sbjct: 127 FRGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGWALIISTPKG-LNW 185 Query: 175 F 175 F Sbjct: 186 F 186 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 116 FGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQAT-ARCSVTGSKMWFNCNPSGPFHW 174 F GK D ++G TL DE A++P S ++A SV P G +W Sbjct: 127 FRGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGWALIISTPKG-LNW 185 Query: 175 F 175 F Sbjct: 186 F 186 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.322 0.136 0.425 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,608 Number of Sequences: 514 Number of extensions: 9035 Number of successful extensions: 130 Number of sequences better than 100.0: 58 Number of HSP's better than 100.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 64 length of query: 424 length of database: 206,069 effective HSP length: 74 effective length of query: 350 effective length of database: 168,033 effective search space: 58811550 effective search space used: 58811550 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 38 (19.2 bits)