Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bxb1 | Genbank acc : NC_002656 | Aclame index mge :51

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 86

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|Aclame:protein:vir:2344\|NCBI_annot:gp14\|genbank:acc:NP_075281;genbank:gi:12657868;genbank:GeneID	HHsearch (proba=100.00%)
Portal	11	lcl\|Aclame:protein:vir:2341\|NCBI_annot:gp11\|genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID	HHsearch (proba=100.00%)
TermL	10	lcl\|Aclame:protein:vir:2340\|NCBI_annot:gp10\|genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	15	lcl\|Aclame:protein:vir:2345\|NCBI_annot:gp15\|genbank:acc:NP_075282;genbank:gi:12657869;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	16	lcl\|Aclame:protein:vir:2346\|NCBI_annot:gp16\|genbank:acc:NP_075283;genbank:gi:12657870;genbank:GeneID	HHsearch (proba=100.00%)
Ne1	17	lcl\|Aclame:protein:vir:2347\|NCBI_annot:gp17\|genbank:acc:NP_075284;genbank:gi:12657871;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	18	lcl\|Aclame:protein:vir:2348\|NCBI_annot:gp18\|genbank:acc:NP_075285;genbank:gi:12657872;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2344 protein:vir:2430 protein:vir:104085	Bxb1 D29 Che12	100 % 70 % 70 %
Portal	protein:vir:2341 protein:vir:7768 protein:vir:104082	Bxb1 Bxz2 Che12	100 % 66 % 62 %
TermL	protein:vir:2340 protein:vir:78494 protein:vir:78228	Bxb1 U2 Bethlehem	100 % 83 % 80 %
Ad1	protein:vir:2345 protein:vir:7773 protein:vir:4228	Bxb1 Bxz2 L5	100 % 57 % 56 %
Hc1	protein:vir:2346 protein:vir:78529 protein:vir:78288	Bxb1 U2 Bethlehem	100 % 90 % 89 %
Ne1	protein:vir:78503 protein:vir:78298 protein:vir:2347	U2 Bethlehem Bxb1	100 % 100 % 100 %
Tc1	protein:vir:2348 protein:vir:78481 protein:vir:78292	Bxb1 U2 Bethlehem	100 % 99 % 99 %