Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Che9d | Genbank acc : NC_004686 | Aclame index mge :153

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 111

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:8187\|NCBI_annot:gp7\|genbank:acc:NP_817980;genbank:gi:29566414;genbank:GeneID:	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:8184\|NCBI_annot:gp4\|genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:8183\|NCBI_annot:gp3\|genbank:acc:NP_817976;genbank:gi:29566410;genbank:GeneID:	Blast (e-value=0)
MTP	14	lcl\|Aclame:protein:vir:8194\|NCBI_annot:gp14\|genbank:acc:NP_817987;genbank:gi:29566421;genbank:GeneID	Blast (e-value=1e-116)
Sheath	NOT FOUND
Ad1	9	lcl\|Aclame:protein:vir:8189\|NCBI_annot:gp9\|genbank:acc:NP_817982;genbank:gi:29566416;genbank:GeneID:	HHsearch (proba=100.00%)
Hc1	10	lcl\|Aclame:protein:vir:8190\|NCBI_annot:gp10\|genbank:acc:NP_817983;genbank:gi:29566417;genbank:GeneID	HHsearch (proba=100.00%)
Ne1	12	lcl\|Aclame:protein:vir:8192\|NCBI_annot:gp12\|genbank:acc:NP_817985;genbank:gi:29566419;genbank:GeneID	HHsearch (proba=99.96%)
Tc1	13	lcl\|Aclame:protein:vir:8193\|NCBI_annot:gp13\|genbank:acc:NP_817986;genbank:gi:29566420;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8187 protein:vir:99920 protein:vir:80684	Che9d Halo PA6	100 % 46 % 40 %
Portal	protein:vir:8184 protein:vir:99916 protein:vir:80680	Che9d Halo PA6	100 % 51 % 26 %
TermL	protein:vir:8183 protein:vir:2499 protein:vir:99915	Che9d TM4 Halo	100 % 29 % 29 %
MTP	protein:vir:8194 protein:vir:9580 protein:vir:9765	Che9d SM1 315.3	100 % 34 % 33 %
Ad1	protein:vir:8189 protein:vir:99922 protein:vir:80668	Che9d Halo PA6	100 % 41 % 35 %
Hc1	protein:vir:8190 protein:vir:2506 protein:vir:99923	Che9d TM4 Halo	100 % 28 % 23 %
Ne1	protein:vir:8192 protein:vir:94763 protein:vir:1642	Che9d phi LC3 r1t	100 % 26 % 26 %
Tc1	protein:vir:8193 protein:vir:98426 protein:vir:9764	Che9d VWB 315.3	100 % 26 % 14 %