BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:9870|NCBI_annot:putative terminase large subunit|genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID:12579 43 (273 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: put... 564 e-163 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 426 e-121 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 425 e-121 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 424 e-121 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 410 e-117 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 395 e-112 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 395 e-112 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 394 e-112 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 393 e-111 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 393 e-111 gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hyp... 343 1e-96 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 121 1e-29 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 112 5e-27 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 112 5e-27 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 112 5e-27 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 112 6e-27 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 112 7e-27 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 112 7e-27 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 110 3e-26 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 109 4e-26 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 104 1e-24 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 102 4e-24 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 79 6e-17 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 73 5e-15 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 72 9e-15 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 67 3e-13 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 58 1e-10 gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putat... 57 2e-10 gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 54 1e-09 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 53 4e-09 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 50 2e-08 gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp... 45 1e-06 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 39 5e-05 gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 39 6e-05 gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hyp... 29 0.052 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 28 0.16 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 28 0.17 gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18... 27 0.35 gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: Bc... 25 0.95 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 24 1.9 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 24 1.9 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 24 2.0 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 23 2.6 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 23 3.2 >gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID :1257943 Length = 273 Score = 564 bits (1454), Expect = e-163, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE Sbjct: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL Sbjct: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE Sbjct: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL Sbjct: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 Query: 241 EDKVNHAIDATRYAMSDDMRATKTIVKTFKGGI 273 EDKVNHAIDATRYAMSDDMRATKTIVKTFKGGI Sbjct: 241 EDKVNHAIDATRYAMSDDMRATKTIVKTFKGGI 273 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 426 bits (1095), Expect = e-121, Method: Compositional matrix adjust. Identities = 200/268 (74%), Positives = 229/268 (85%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL +GLFYKFF++YNPPKRKQSWVNKKYES FQP NTFVH STY DNPFIAK+FI E Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLDNPFIAKQFIDE 213 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AEA +ER+E RYRWEYLGEAIGSGVVPF+NL+ E+I DE FDNIRN +D+GYATDPL Sbjct: 214 AEAAKERNELRYRWEYLGEAIGSGVVPFNNLQIEKIPDELFRSFDNIRNAVDFGYATDPL 273 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DEYYG +ISNRQ KWL +KGYQSD+++A+SAEPKS EL+ E Sbjct: 274 AFVRWHYDKKKRVIYAVDEYYGVQISNRQFGKWLWSKGYQSDDIYADSAEPKSIDELRKE 333 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 GIKRIKGVKKGPDSVE+GE+WL+DLD I IDP RTPNIAREFENID++ D+DGN KP+L Sbjct: 334 HGIKRIKGVKKGPDSVEYGEQWLNDLDAIVIDPNRTPNIAREFENIDFETDKDGNVKPKL 393 Query: 241 EDKVNHAIDATRYAMSDDMRATKTIVKT 268 EDK NH IDATRYA+ DMR K + T Sbjct: 394 EDKDNHTIDATRYALERDMRQNKISILT 421 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 425 bits (1093), Expect = e-121, Method: Compositional matrix adjust. Identities = 198/268 (73%), Positives = 228/268 (85%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL DGLFYKFF++YNPPKRKQSWVNKKYE+ FQP NTFVH STY DNPFI+K+FI E Sbjct: 154 LRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISKQFIQE 213 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AE+ +ER+E+RYRWEY+GEAIGSGVVPF+NL+ E+I D+ FDNIRN +D+GYATDPL Sbjct: 214 AESAKERNEQRYRWEYMGEAIGSGVVPFNNLQIEKIPDDLYKTFDNIRNAVDFGYATDPL 273 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DE+YG +ISNR+ A WL +GYQSDE++A+SAEPKS AELK E Sbjct: 274 AFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKRRGYQSDEIYADSAEPKSIAELKQE 333 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 GIKRIKGVKKGPDSVE GE+WLDDL I IDP RTPNIAREFENIDY+ D+DGN KPRL Sbjct: 334 HGIKRIKGVKKGPDSVEHGEQWLDDLTAIVIDPNRTPNIAREFENIDYETDKDGNVKPRL 393 Query: 241 EDKVNHAIDATRYAMSDDMRATKTIVKT 268 EDK NH IDATRYA+ DMR K + T Sbjct: 394 EDKDNHTIDATRYALERDMRQNKLSILT 421 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 424 bits (1090), Expect = e-121, Method: Compositional matrix adjust. Identities = 202/268 (75%), Positives = 224/268 (83%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL +GLFYKFFYTYNPPKRKQSWVNKKYES FQP NTFVH STY +NPFIAKEFI E Sbjct: 152 LRGELDNGLFYKFFYTYNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLNNPFIAKEFIEE 211 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 A+A + +E RYRWEYLGEAIGSGVVPF+NLR E I EQ FDNIRN +D+GYATDPL Sbjct: 212 AKAAKAINELRYRWEYLGEAIGSGVVPFNNLRIETIPKEQFDTFDNIRNAVDFGYATDPL 271 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DE+YG +ISNR+ A WL KGYQSDE++A+SAEPKS AELK E Sbjct: 272 AFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKKKGYQSDEIYADSAEPKSIAELKQE 331 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 I+RIKGVKKGPDSVE GE+WL+DLD I IDP RTPNIAREFENIDYQ D+DGN KPRL Sbjct: 332 HSIRRIKGVKKGPDSVEHGEQWLNDLDAIVIDPTRTPNIAREFENIDYQTDKDGNVKPRL 391 Query: 241 EDKVNHAIDATRYAMSDDMRATKTIVKT 268 EDK NH IDATRYA+ DMR K + T Sbjct: 392 EDKDNHTIDATRYALERDMRQNKVSILT 419 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 410 bits (1055), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/294 (67%), Positives = 227/294 (77%), Gaps = 26/294 (8%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL DGLFYKFF++YNPPKRKQSWVNKKYE+ FQP NTFVH STY DNPFI+K+FI E Sbjct: 153 LRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQPDNTFVHHSTYLDNPFISKQFIQE 212 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGY----- 115 AE+ +ER+E+RYRWEY+GEAIGSGVVPF+NL+ E+I DE FDNIRN +D+G Sbjct: 213 AESAKERNEQRYRWEYMGEAIGSGVVPFNNLQIEKIPDELYKSFDNIRNAVDFGLTKTAP 272 Query: 116 ---------------------ATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWL 154 ATDPLAFVRWHYDKKK IYA+DE+YG +ISNR+ A WL Sbjct: 273 LHSDVYSKLGEHISGVRKKACATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWL 332 Query: 155 TTKGYQSDEMFAESAEPKSNAELKNEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPK 214 +GYQSDE++A+SAEPKS AELK E GIKRIKGVKKGPDSVE GE+WLDDL I IDP Sbjct: 333 KRRGYQSDEIYADSAEPKSIAELKQEHGIKRIKGVKKGPDSVEHGEQWLDDLTAIVIDPN 392 Query: 215 RTPNIAREFENIDYQVDRDGNPKPRLEDKVNHAIDATRYAMSDDMRATKTIVKT 268 RTPNIAREFENIDY+ D+DGN KPRLEDK NH IDATRYA+ DMR K + T Sbjct: 393 RTPNIAREFENIDYETDKDGNVKPRLEDKDNHTIDATRYALERDMRQNKLSILT 446 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 395 bits (1016), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/266 (73%), Positives = 226/266 (84%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL +GLFYKFF++YNPPKRKQSWVNKKYES FQ NT+VH STY +NPFI+K+FI E Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISKQFIQE 213 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AE+ ++R+E+RYRWEY+GEAIGSGVVPF+NLR E I Q FDNIRN +D+GYATDPL Sbjct: 214 AESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQRQYDTFDNIRNAVDFGYATDPL 273 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DEYYG +ISNR+ A WL KGYQSDE+FA+SAEPKS AELK E Sbjct: 274 AFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKGYQSDEIFADSAEPKSIAELKQE 333 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 GIK+IKGVKKG DSVEFGE+WLDDLD I IDP+RTPNIAREFENIDY+ D+DGN KP+L Sbjct: 334 HGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFENIDYETDKDGNVKPKL 393 Query: 241 EDKVNHAIDATRYAMSDDMRATKTIV 266 EDK NH IDATRYA+ DMR K + Sbjct: 394 EDKDNHTIDATRYALERDMRQNKLSI 419 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 395 bits (1016), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/266 (73%), Positives = 226/266 (84%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL +GLFYKFF++YNPPKRKQSWVNKKYES FQ NT+VH STY +NPFI+K+FI E Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISKQFIQE 213 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AE+ ++R+E+RYRWEY+GEAIGSGVVPF+NLR E I Q FDNIRN +D+GYATDPL Sbjct: 214 AESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQRQYDTFDNIRNAVDFGYATDPL 273 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DEYYG +ISNR+ A WL KGYQSDE+FA+SAEPKS AELK E Sbjct: 274 AFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKGYQSDEIFADSAEPKSIAELKQE 333 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 GIK+IKGVKKG DSVEFGE+WLDDLD I IDP+RTPNIAREFENIDY+ D+DGN KP+L Sbjct: 334 HGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFENIDYETDKDGNVKPKL 393 Query: 241 EDKVNHAIDATRYAMSDDMRATKTIV 266 EDK NH IDATRYA+ DMR K + Sbjct: 394 EDKDNHTIDATRYALERDMRQNKLSI 419 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 394 bits (1011), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/266 (73%), Positives = 226/266 (84%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL +GLFYKFF++YNPPKRKQSWVNKKYES FQ NT+VH STY +NPFI+K+FI E Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTYVHHSTYLNNPFISKQFIQE 213 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AE+ ++R+E+RYRWEY+GEAIGSGVVPF+NLR E I Q FDNIRN +D+GYATDPL Sbjct: 214 AESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQRQYDTFDNIRNAVDFGYATDPL 273 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DE+YG +ISNR+ A WL KGYQSDE+FA+SAEPKS AELK E Sbjct: 274 AFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEVFADSAEPKSIAELKQE 333 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 GIK+IKGVKKG DSVEFGE+WLDDLD I IDP+RTPNIAREFENIDY+ D+DGN KP+L Sbjct: 334 HGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFENIDYETDKDGNVKPKL 393 Query: 241 EDKVNHAIDATRYAMSDDMRATKTIV 266 EDK NH IDATRYA+ DMR K + Sbjct: 394 EDKDNHTIDATRYALERDMRQNKLSI 419 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 393 bits (1010), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/268 (72%), Positives = 230/268 (85%), Gaps = 1/268 (0%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL +GLFYKFF++YNPPKRKQSWVNKKYES FQ NTFVH STY +NPFI+K+FI E Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTFVHHSTYLNNPFISKQFIQE 213 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AE+ ++R+E+RYRWEY+GEAIGSGVVPF+NLR E I Q FDNIRN +D+GYATDPL Sbjct: 214 AESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQGQYDTFDNIRNAVDFGYATDPL 273 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DE+YG +ISNR+ A WL KGYQSDE+FA+SAEPKS AELK E Sbjct: 274 AFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEIFADSAEPKSIAELKQE 333 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 GIK++K VKKG DSVE+GE+WLDDL+ I IDP+RTPNIAREFENIDYQ D+DGN KP+L Sbjct: 334 HGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRRTPNIAREFENIDYQTDKDGNVKPKL 393 Query: 241 EDKVNHAIDATRYAMSDDMR-ATKTIVK 267 EDK NHAIDATRYA+ DMR ++ +I+K Sbjct: 394 EDKDNHAIDATRYALERDMRQSSLSILK 421 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 393 bits (1010), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/268 (72%), Positives = 230/268 (85%), Gaps = 1/268 (0%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +RGEL +GLFYKFF++YNPPKRKQSWVNKKYES FQ NTFVH STY +NPFI+K+FI E Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTFVHHSTYLNNPFISKQFIQE 213 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPL 120 AE+ ++R+E+RYRWEY+GEAIGSGVVPF+NLR E I Q FDNIRN +D+GYATDPL Sbjct: 214 AESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQGQYDTFDNIRNAVDFGYATDPL 273 Query: 121 AFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNE 180 AFVRWHYDKKK IYA+DE+YG +ISNR+ A WL KGYQSDE+FA+SAEPKS AELK E Sbjct: 274 AFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEIFADSAEPKSIAELKQE 333 Query: 181 FGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKPRL 240 GIK++K VKKG DSVE+GE+WLDDL+ I IDP+RTPNIAREFENIDYQ D+DGN KP+L Sbjct: 334 HGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRRTPNIAREFENIDYQTDKDGNVKPKL 393 Query: 241 EDKVNHAIDATRYAMSDDMR-ATKTIVK 267 EDK NHAIDATRYA+ DMR ++ +I+K Sbjct: 394 EDKDNHAIDATRYALERDMRQSSLSILK 421 >gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690654;genbank:geneid:6329138;genbank:gi: 22855048;goa:P54308;interpro:IPR006437;interpro:IPR00670 1;interpro:IPR011441;uniprot:P54308;genbank:GeneID:95525 4 Length = 422 Score = 343 bits (880), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 167/262 (63%), Positives = 199/262 (75%), Gaps = 2/262 (0%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 +R EL G Y FFY+YNPPKRKQSWVNK + S F P+NTFV STY NPF++K FI E Sbjct: 153 LRAELPPGCRYIFFYSYNPPKRKQSWVNKVFNSSFLPANTFVDHSTYLQNPFLSKAFIEE 212 Query: 61 AEATRERSERRYRWEYLGEAIGSGVVPFDNLRFER--ITDEQVADFDNIRNGIDYGYATD 118 AE + R+E +YR EYLGEA+GSGVVPF+NL+ E ITD +VA FDNIR G+D+GY D Sbjct: 213 AEEVKRRNELKYRHEYLGEALGSGVVPFENLQIEEGIITDAEVARFDNIRQGLDFGYGPD 272 Query: 119 PLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELK 178 PLAFVRWHYDK+KN IYAIDE K+S ++ A ++ Y+S + A+S+EP+S LK Sbjct: 273 PLAFVRWHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNKYESARIIADSSEPRSIDALK 332 Query: 179 NEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNPKP 238 E GI RI+G KKGPDSVE GERWLD+LD I IDP RTPNIAREFENIDYQ D++G+P P Sbjct: 333 LEHGINRIEGAKKGPDSVEHGERWLDELDAIVIDPLRTPNIAREFENIDYQTDKNGDPIP 392 Query: 239 RLEDKVNHAIDATRYAMSDDMR 260 RLEDK NH IDATRYA DM+ Sbjct: 393 RLEDKDNHTIDATRYAFERDMK 414 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 121 bits (303), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 134/266 (50%), Gaps = 18/266 (6%) Query: 1 MRGE-LGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTY----KDNP-FIA 54 MRGE GD + FY YNPPK K W+N + + +VH ST+ +P ++ Sbjct: 175 MRGEGTGDS---RAFYLYNPPKYKGHWLNNWVDVIRDEPSQYVHHSTFIPIALHHPEWLG 231 Query: 55 KEFIAEAEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIR--NGID 112 ++ A R+++ RY WE+LG + +G F N E IT + + D +R G D Sbjct: 232 STWLESARLVRDKNPNRYEWEFLGRNVNTGNEVFPNAVQEHITFDMI---DGLRPYEGFD 288 Query: 113 YGYATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAK-WLTTKGYQSDEMFAESAEP 171 GY DP ++R YD++++ +Y DE ++ + LAK L + + + +SA P Sbjct: 289 EGYTADPSVWLRVFYDEQRDTVYITDELVMKRYKTKALAKDILNVQEGSYNIVRGDSANP 348 Query: 172 KSNAELKNEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVD 231 + E++ + G+ + V K P+SV G WL + I ID K PN REF + D Sbjct: 349 RVLDEMR-DLGVNAL-AVSKSPNSVPHGTNWLANRIKIVIDFK-CPNTWREFSSYALLPD 405 Query: 232 RDGNPKPRLEDKVNHAIDATRYAMSD 257 GN K DK NH ID TRYA+ + Sbjct: 406 GVGNRKHGFPDKDNHTIDTTRYALEE 431 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 112 bits (280), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 160 QIFLMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 218 Query: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRW 125 Y+ LGE D L F + ++++ + D +R+ G+D+GY DP AF+ Sbjct: 219 YYKIYALGE-----FATLDKLVFPK-YEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHS 272 Query: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKR 185 D KK +Y I+EY Q + N ++A + GY +E+ A+SAE KS AEL+N G+KR Sbjct: 273 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRN-LGLKR 331 Query: 186 IKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKV 244 I KKG SV G ++L + F I +R EF+N +Q D+D G D Sbjct: 332 ILPTKKGKGSVVQGLQFL--MQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTY 389 Query: 245 NHAIDATRYAM 255 NH ID+ RY++ Sbjct: 390 NHCIDSLRYSV 400 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 112 bits (280), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 160 QIFLIFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 218 Query: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRW 125 Y+ LGE D L F + ++++ + D +R+ G+D+GY DP AF+ Sbjct: 219 YYKIYALGE-----FATLDKLVFPK-YEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHS 272 Query: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKR 185 D KK +Y I+EY Q + N ++A + GY +E+ A+SAE KS AEL+N G+KR Sbjct: 273 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRN-LGLKR 331 Query: 186 IKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKV 244 I KKG SV G ++L + F I +R EF+N +Q D+D G D Sbjct: 332 ILPTKKGKGSVVQGLQFL--MQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTY 389 Query: 245 NHAIDATRYAM 255 NH ID+ RY++ Sbjct: 390 NHCIDSLRYSV 400 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 112 bits (280), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 182 QIFLMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 240 Query: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRW 125 Y+ LGE D L F + ++++ + D +R+ G+D+GY DP AF+ Sbjct: 241 YYKIYALGE-----FATLDKLVFPK-YEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHS 294 Query: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKR 185 D KK +Y I+EY Q + N ++A + GY +E+ A+SAE KS AEL+N G+KR Sbjct: 295 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRN-LGLKR 353 Query: 186 IKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKV 244 I KKG SV G ++L + F I +R EF+N +Q D+D G D Sbjct: 354 ILPTKKGKGSVVQGLQFL--MQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTY 411 Query: 245 NHAIDATRYAM 255 NH ID+ RY++ Sbjct: 412 NHCIDSLRYSV 422 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 112 bits (279), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 182 QIFLMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 240 Query: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRW 125 Y+ LGE D L F + ++++ + D +R+ G+D+GY DP AF+ Sbjct: 241 YYKIYALGE-----FATLDKLVFPK-YEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHS 294 Query: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKR 185 D KK +Y I+EY Q + N ++A + GY +E+ A+SAE KS AEL+N G+KR Sbjct: 295 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAREEITADSAEQKSIAELRN-LGLKR 353 Query: 186 IKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKV 244 I KKG SV G ++L + F I +R EF+N +Q D+D G D Sbjct: 354 ILPTKKGKGSVVQGLQFL--MQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTY 411 Query: 245 NHAIDATRYAM 255 NH ID+ RY++ Sbjct: 412 NHCIDSLRYSV 422 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 112 bits (279), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 182 QIFLMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 240 Query: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRW 125 Y+ LGE D L F + ++++ + D +R+ G+D+GY DP AF+ Sbjct: 241 YYKIYALGE-----FSTLDKLVFPK-YEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHS 294 Query: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKR 185 D KK +Y I+EY Q + N ++A + GY +E+ A+SAE KS AEL+N G+KR Sbjct: 295 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRN-LGLKR 353 Query: 186 IKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKV 244 I KKG SV G ++L + F I +R EF+N +Q D+D G D Sbjct: 354 ILPTKKGKGSVVQGLQFL--MQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTY 411 Query: 245 NHAIDATRYAM 255 NH ID+ RY++ Sbjct: 412 NHCIDSLRYSV 422 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 112 bits (279), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 182 QIFLMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 240 Query: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRW 125 Y+ LGE D L F + ++++ + D +R+ G+D+GY DP AF+ Sbjct: 241 YYKIYALGE-----FSTLDKLVFPK-YEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHS 294 Query: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKR 185 D KK +Y I+EY Q + N ++A + GY +E+ A+SAE KS AEL+N G+KR Sbjct: 295 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRN-LGLKR 353 Query: 186 IKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKV 244 I KKG SV G ++L + F I +R EF+N +Q D+D G D Sbjct: 354 ILPTKKGKGSVVQGLQFL--MQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTY 411 Query: 245 NHAIDATRYAM 255 NH ID+ RY++ Sbjct: 412 NHCIDSLRYSV 422 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 110 bits (274), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 16/244 (6%) Query: 20 PKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 79 P K +WV K + + P NT V+ +TYKDN F+ E R+E Y+ LG+ Sbjct: 173 PVSKVNWVYKAFFVK-TPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQ 231 Query: 80 AIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRWHYDKKKNGI 134 D L F + D+Q+ + D + + G+DYG+ DP A + D + Sbjct: 232 -----FATLDKLIFPKY-DKQILNKDKLSHLPSFFGLDYGFINDPSALLHVKIDDANKKL 285 Query: 135 YAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKRIKGVKKGPD 194 Y ++EY + ++N ++A + GY +E+ +SAE KSN EL+N GI R+ V KGP Sbjct: 286 YILEEYVRKNLTNDKIANAIKDLGYAKEEIRGDSAEKKSNQELRN-LGIPRMIDVTKGPG 344 Query: 195 SVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNP-KPRLEDKVNHAIDATRY 253 +V G ++L D+I +R E EN ++ D+ N D NH IDA RY Sbjct: 345 TVMQGIQYLLQYDWIV--DERCVKTIEELENYTWKKDKKTNEYTNEPVDSYNHCIDAIRY 402 Query: 254 AMSD 257 A+ D Sbjct: 403 AVQD 406 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 109 bits (272), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 137/270 (50%), Gaps = 20/270 (7%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQPSNTF------VHASTYKDNPFIAKEFIAEAEATR 65 + F +NP + +N Y++ F PS + +H STYKDN F+ ++ I E + Sbjct: 160 QIFCMFNPVSK----LNWTYQTWFDPSADYDRSRVAIHQSTYKDNRFLDEDNIRTIEELK 215 Query: 66 ERSERRYRWEYLGE--AIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFV 123 + Y+ LGE + V P+ + D ++ ++ G+DYG+ DP AF+ Sbjct: 216 NTNPAYYKIYTLGEFATLDKLVFPYFETKRLNPRDPKLLALNDYF-GLDYGFINDPSAFM 274 Query: 124 RWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGI 183 D + +Y +DE+ + + N QLA+ + GY + + A+SAE KS AE+K + GI Sbjct: 275 HIKLDMRNKTLYVMDEFVKKGLLNNQLAQVIKDMGYSKEVITADSAEKKSIAEMKRD-GI 333 Query: 184 KRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGNP-KPRLED 242 RI+ KGPDS+ G ++L ++ D R E +N Y D+ + R D Sbjct: 334 YRIRPALKGPDSIIQGIQFLQQFKWVVDD--RCVKTIEELQNYTYVKDKKTDEYTNRPID 391 Query: 243 KVNHAIDATRYAMSDD--MRATK-TIVKTF 269 NH IDA RYA+ ++ +TK T++K+F Sbjct: 392 AYNHCIDAIRYAVEEENGHGSTKATLLKSF 421 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 104 bits (259), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 14/265 (5%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAE 60 MRGEL G FY+ T+NP + ++ ++ + + +++ +TYKDN + +++ Sbjct: 162 MRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKRNHSRAITTTYKDNDHLNADYVDS 221 Query: 61 AEATRERSERRYRWEYLGE-AIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYG 114 + R+ R R LGE I G+V F+ + +++ +D I N G+D+G Sbjct: 222 LKEMLVRNPNRARVAVLGEWGIAEGLV------FDGLFEQRDFSYDEIANLPKSVGLDFG 275 Query: 115 YATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSN 174 + DP A D+ +Y DE+Y Q + Q+A+ L + A+SAE + Sbjct: 276 FKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTNQIAQELAKHKAFGLPITADSAEQRMI 335 Query: 175 AELKNEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDG 234 EL + + IK KG DSV G +++ F+ + P R + EF Y +D++G Sbjct: 336 VELSQQHRVPNIKPSGKGKDSVIQGIQYMQSYRFV-VHP-RVKGLMEEFNTYVYDMDKEG 393 Query: 235 NPKPRLEDKVNHAIDATRYAMSDDM 259 N + +D NHAIDA RYA+ M Sbjct: 394 NWLNKPKDANNHAIDALRYALEKYM 418 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 102 bits (255), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 182 QIFLMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 240 Query: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFVRWHYDKK 130 Y+ LGE + F I+D++V + G+D+GY DP AF+ D Sbjct: 241 YYKIYALGEFATLDKLVFPKYEKRIISDKEVGHLPSYF-GLDFGYVNDPSAFIHVKIDND 299 Query: 131 KNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKRIKGVK 190 +Y I EY + + N ++A+ + GY +++ A+SAE KS E+K GI RI Sbjct: 300 NKKLYVISEYVKKGMLNNEIAQVINDLGYSKEKITADSAEQKSIMEIKTN-GIDRIVPAM 358 Query: 191 KGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKVNHAID 249 KG DSV G +++ D I ID +R EF+N ++ D++ G D NH ID Sbjct: 359 KGKDSVMAGIQFVSQFD-IVID-ERCYKTIEEFDNYTWKKDKNTGEYYNEPVDTYNHCID 416 Query: 250 ATRYAM 255 A RYA+ Sbjct: 417 ALRYAV 422 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 79.0 bits (193), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 118/249 (47%), Gaps = 26/249 (10%) Query: 20 PKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRERSE-----RRYRW 74 P++K S V+K++ QF+P + V Y DNPF K E R E Y Sbjct: 158 PRKKGSPVDKRFR-QFKPDDAVVVEMNYYDNPFFPKGL----EDLRRHDEDTMPPELYAH 212 Query: 75 EYLG---EAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFVRWHYDKKK 131 +LG E + V F N + E++ ++ G+D+G++ DP A V+ + Sbjct: 213 VWLGAYYEHTEAQV--FKNWKVEQV---NTNGWEGPYYGLDFGFSQDPTAGVKCWLNG-- 265 Query: 132 NGIYAIDEYYGQKISNRQLAKWLTTK--GYQSDEMFAESAEPKSNAELKNEFGIKRIKGV 189 N +Y E + A +L + G +++A+SA P+S + LK GI RI+GV Sbjct: 266 NDVYIEKEAGKVGLEIDHTADYLIKRIDGIDDAKVYADSARPESISLLKRT-GIPRIEGV 324 Query: 190 KKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDR-DGNPKPRLEDKVNHAI 248 K SVE G WL I IDP+ T I +EF Y+ DR G K +L D NH I Sbjct: 325 PKWKGSVEDGVEWLRS-KRIFIDPECTETI-KEFTYYSYKTDRYTGEIKNQLVDAYNHYI 382 Query: 249 DATRYAMSD 257 DA RY +D Sbjct: 383 DAIRYCFND 391 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 72.8 bits (177), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 122/260 (46%), Gaps = 9/260 (3%) Query: 1 MRGELGDGLFYK-FFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIA 59 +RG F+K T+NP + ++ + + +NTF +TY+ N ++ K I Sbjct: 150 IRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETKLNNTFSDTTTYRVNEWLDKVDIE 209 Query: 60 EAEATRERSERRYRWEYLGE-AIGSGVVPFDNLRFERIT-DEQVADFDNIRNGIDYGYAT 117 E ++ RR R G+ + G+V FDN + E E+ I +G+D+G++ Sbjct: 210 RYEDLYIKNPRRARIVCDGDWGVAEGLV-FDNFKVEDFDWFEEFKRTQEITHGMDFGFSQ 268 Query: 118 DPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAE--SAEPKSNA 175 DP V D K ++ DE+Y + + + + L KG ++ A+ + + + Sbjct: 269 DPTTVVSTVVDLKNKKLFIYDEHYKKAMLTDDIKQMLIKKGLGDVDIAADYGAGGDRVIS 328 Query: 176 ELKNEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRDGN 235 ELK++ GIK I+ KG +++ G +++ + I I P + EF + D DG Sbjct: 329 ELKSK-GIKGIRKALKGANTILPGIQFIQGFEVI-IHPS-CEHAIEEFNTYTFDQDNDGK 385 Query: 236 PKPRLEDKVNHAIDATRYAM 255 + D NH IDA RY++ Sbjct: 386 WLNKPIDANNHIIDALRYSL 405 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 71.6 bits (174), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 23/266 (8%) Query: 1 MRGELGDGLFYK-FFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIA 59 +RG + F+K T+NP + + ++ + + F +TY+ N ++ ++ I Sbjct: 154 IRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDEDTRKKDVFADTTTYRVNEWLDQQDID 213 Query: 60 EAEATRERSERRYRWEYLGE-AIGSGVVPFDNLRFERITDEQVADFDNIRN--------- 109 E + RR G+ + G+V F+N +V DFD + Sbjct: 214 RYEDLWRTNPRRAAVVANGDWGVAEGLV-FENY--------EVKDFDIVSTIKRIGETTA 264 Query: 110 GIDYGYATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESA 169 G+D+G+ DP F R D +K ++ E+Y ++ + K + Q+ + A+SA Sbjct: 265 GLDFGFTHDPTTFPRLAVDLEKKELWIYAEHYEHAMTTDDIFKMIVDADMQNAVITADSA 324 Query: 170 EPKSNAELKNEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQ 229 E + AEL+ + GI+R+ KG S+ G ++ I I P I EF+ Y+ Sbjct: 325 EQRLIAELQAK-GIRRLVPSIKGKGSINAGIDFMKQFK-IYIHPSCIKTI-EEFDTYIYK 381 Query: 230 VDRDGNPKPRLEDKVNHAIDATRYAM 255 D+DG D NH IDA RYA+ Sbjct: 382 QDKDGKWLNEPIDSNNHIIDAIRYAL 407 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 66.6 bits (161), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 13/263 (4%) Query: 1 MRGELGD-GLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIA 59 +RG L + L+Y+ +T+NP W+ +KY ++ + F H STY N FI + + Sbjct: 157 LRGILTNPNLYYQMTFTFNPVSATH-WIKRKY-FDYKNDDIFTHHSTYLQNRFIDEAYYR 214 Query: 60 EAEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDP 119 + +E+ Y+ LGE +G N E FDN+R D+G+ Sbjct: 215 RMQMRKEQDPEGYKVYGLGEWGETGGAILKNYVIHEFPTES-EYFDNMRLSQDFGFNH-- 271 Query: 120 LAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDE-MFAESAEPKSNAELK 178 A V K +Y +E Y ++ ++ K + G + M+ +SAEP ++ Sbjct: 272 -ANVVLRIGFKDGELYICNEIYAHEMDTSEIIKIANSIGLEKTLFMYCDSAEP-DRIKMW 329 Query: 179 NEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVD-RDGNPK 237 G K KGVKKGP SV+ +L L I + P T N +E + ++ D R G Sbjct: 330 KSAGYKA-KGVKKGPGSVKAQIDYLKQLR-IHVHPSCT-NTIKEIQQWKWKQDERTGLYL 386 Query: 238 PRLEDKVNHAIDATRYAMSDDMR 260 + ++ A+ A RY++ + ++ Sbjct: 387 DEPVEFMDDAMAALRYSIDNKLK 409 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 57.8 bits (138), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 120/279 (43%), Gaps = 21/279 (7%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNP--FIAKEFI 58 +R +L G + ++NPP+ WVN+ +S+ + +H +TY D+ F++K+ I Sbjct: 161 IREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIHHTTYLDDEKGFLSKQII 220 Query: 59 AEAEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVAD-FDNIRNGIDYGYAT 117 + E ++ YRW YLGE IG G ++ F+ + D I ID G+ Sbjct: 221 KKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAIPADDRLILIDFAIDTGHQV 280 Query: 118 DPLAFVRWHYDKKKNGIYAIDEYY----GQKIS------NRQLAKWLT--TKGYQS--DE 163 + + K+N I +D YY Q + +++L +++T Y + D Sbjct: 281 SATTCLALGFTAKRNVI-LLDTYYYSPANQVVKKAPSDYSKELREFMTKVVSKYNAPVDM 339 Query: 164 MFAESAEPKSNAELKNEFGIKRIKGVKKGP--DSVEFGERWLDDLDFICIDPKRTPNIAR 221 +SAE + ++G+ + V KG D V+F L F +D Sbjct: 340 QTVDSAEGGLRNQYYKDYGVS-LHPVAKGKKVDMVDFVCDLLAQGRFYYLDIPENQIFIE 398 Query: 222 EFENIDYQVDRDGNPKPRLEDKVNHAIDATRYAMSDDMR 260 E + V KP + + +H DA +Y + D++R Sbjct: 399 EHRKYQWDVKTVNTDKPEVIKEDDHTCDAFQYYVKDNLR 437 >gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463463;swissprot:trembl:q9t1c1;genbank:gi :16798785;goa:Q9T1C1;uniprot:Q9T1C1;genbank:GeneID:92238 4 Length = 443 Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 118/278 (42%), Gaps = 19/278 (6%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNP--FIAKEFI 58 +R +L G + ++NPP+ WVN+ +S+ + +H +TY D+ F++K+ I Sbjct: 161 IREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIHHTTYLDDEKGFLSKQII 220 Query: 59 AEAEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVAD-FDNIRNGIDYGYAT 117 + E ++ YRW YLGE IG G ++ F+ + D I ID G+ Sbjct: 221 KKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAIPADDRLILIDFAIDTGHQV 280 Query: 118 DPLAFVRWHYDKKKNGIYAIDEYYG---QKIS------NRQLAKWLT--TKGYQS--DEM 164 ++ + K+N I YY Q + +++L ++T Y + D Sbjct: 281 SATTYLSFGLTAKRNVILLNTYYYSPANQVVKKAPSEYSKELRDFMTKVVGNYNTNVDMQ 340 Query: 165 FAESAEPKSNAELKNEFGIKRIKGVKKGP--DSVEFGERWLDDLDFICIDPKRTPNIARE 222 +SAE + ++G+ + V KG D ++F L F +D E Sbjct: 341 TVDSAEGGLRNQYYKDYGVS-LHPVAKGKKVDMIDFVCDLLAQGRFYYLDIPENQIFIEE 399 Query: 223 FENIDYQVDRDGNPKPRLEDKVNHAIDATRYAMSDDMR 260 + V KP + + +H DA +Y + D++R Sbjct: 400 HRKYQWDVKTINTDKPEVVKEDDHTCDAFQYYVKDNLR 437 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 54.3 bits (129), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNP--FIAKEFI 58 MR + F +FF++YNPP+ SW+N+ +ES N H+STY D+ F+ ++ + Sbjct: 151 MRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQML 210 Query: 59 AEAEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERI----TDEQVADFDNIRNGIDYG 114 + E +E YR+ YLGEA+G G ++ F I +D+++ +G Sbjct: 211 EDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAIDACPSDDKLIGISFALDGGHQQ 270 Query: 115 YATDPLAF 122 AT AF Sbjct: 271 SATACCAF 278 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 52.8 bits (125), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNP--FIAKEFI 58 MR + F +FF++YNPP+ W+N+ + + VH S+Y D+ F+ + + Sbjct: 159 MRQKHPLAEFVQFFWSYNPPRNPYHWINEWADKMVGEEDYLVHESSYLDDQLGFVTGQML 218 Query: 59 AEAEATRERSERRYRWEYLGEAIGSG 84 + E + YR+ YLGE +G G Sbjct: 219 KDIERIKNNDHDYYRYIYLGEPVGLG 244 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 50.4 bits (119), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNP--FIAKEFIAEAEATRERSE 69 K FY+YNPPK W+N+ + + N + S Y+ + F +K+ + E ++ Sbjct: 174 KVFYSYNPPKNPYDWINEWIDKVSKDDNYLIDTSDYRCDVRGFTSKQTLDLIEQYKKNDY 233 Query: 70 RRYRWEYLGEAIGSG 84 YRW YLGE IG G Sbjct: 234 EYYRWLYLGEVIGLG 248 >gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp2 # Family: family:all:54 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224140;genbank:gi:62362215;genbank:GeneID :3342458 Length = 439 Score = 45.1 bits (105), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 108/273 (39%), Gaps = 38/273 (13%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPF---IAKEFIAEAEATRERS 68 + + T+NP K + K + P ++ + Y DNP+ + +E E A + + Sbjct: 154 EIWVTWNPEKDGSA--TDKLFRKNPPKSSMIVEMNYVDNPWFPAVLEEERQEDLANLDYA 211 Query: 69 ERRYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRNGIDYGYATDPLAFVRW--- 125 + + WE V + + D + + G D+G+A DP +R Sbjct: 212 DYAWIWEGAYLENSDKQVLANKYVVQSFEDNLWRKSERLLFGADFGFAKDPSTLIRMFIL 271 Query: 126 ------HYDKKKNGIYAID--EYYGQKI--SNRQLAKWLTTKGYQSDEMF---------- 165 Y+ NG+ D ++Y K + +QL W T D F Sbjct: 272 DNNLYIEYEAYGNGVELDDMWKFYAGKTDATPKQLKDWKVT----DDTKFPGIPEARKWP 327 Query: 166 --AESAEPKSNAELKNEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREF 223 A+++ P++ + +K + G I +K SVE G +L I I P R A+E Sbjct: 328 IKADNSRPETISHIKGQ-GFN-ISAAQKWQGSVEDGITFLRGFKKIIIHP-RCKETAKEA 384 Query: 224 ENIDYQVDR-DGNPKPRLEDKVNHAIDATRYAM 255 Y+ DR G P +EDK NH D RY + Sbjct: 385 RLYSYKTDRITGEVLPIIEDKNNHCWDGIRYGL 417 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 39.3 bits (90), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 110/269 (40%), Gaps = 48/269 (17%) Query: 8 GLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRER 67 G ++K FY Y +WV+ +H TY+DNP I EA R Sbjct: 190 GNWFKEFYAYGFDDTLPNWVS-------------IHG-TYRDNPRADLNDIEEAR--RTV 233 Query: 68 SERRYRWEYLGE-AIGSGVVPFDNLRFERITDEQVADFDNIRN------------GIDYG 114 S+ +R EY + ++ G + FD F I + V D +R+ GID G Sbjct: 234 SKNYFRQEYEADFSVFEGQI-FDT--FNAI--DHVKDLKGMRHFFKDDEAFETLLGIDVG 288 Query: 115 YATDPLAF--VRWHYDKKKNGIYAIDEYYGQKISNRQLAKWL--TTKGYQSDEMFAESAE 170 Y DP A +++HYD + Y ++EY + + Q A ++ Y+ D +F +SA Sbjct: 289 Y-RDPTAVLTIKYHYD--TDTYYVLEEYQQAEKTTAQHAAYIQHCIDRYKVDRIFVDSAA 345 Query: 171 PKSNAELKNEFGIKRIKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENI--DY 228 + +L E I K D + + I +D ++ +N D+ Sbjct: 346 AQFRQDLAYEHEIASAPAKKSVLDGLACLQALFQQGKII-VDAS-CSSLIHALQNYKWDF 403 Query: 229 Q--VDRDGNPKPRLEDKVNHAIDATRYAM 255 Q ++ KPR D +H DA RY + Sbjct: 404 QEGEEKLSREKPR-HDANSHLCDALRYGI 431 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 38.9 bits (89), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 34/268 (12%) Query: 8 GLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRER 67 G+ Y F P+ + + K + +P +HAS ++D P ++ E + + Sbjct: 195 GIVYLTF----TPEHGLTEIVKDFLQDLKPGQFLIHAS-WEDAPHLSPEVKEQLLSVYSP 249 Query: 68 SERRYRWEYLGEAIGSGVVPFDNLRFERITDE-QVADFDNIRNGIDYGY-ATDPLAFVRW 125 +ERR R E + +GSGVV F L + + + + D + GID G+ + +A V W Sbjct: 250 AERRMRAEGI-PMLGSGVV-FPILEEKFVCEPFDIPDHFHRIIGIDLGFDHPNAIACVAW 307 Query: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAE--------L 177 +K K +Y G+ + A +L G+Q + A A L Sbjct: 308 DAEKDKYYLYDERSESGETLGMHADAIYLK-GGHQIPVVVPHDAFKHDGATSGRRFVDLL 366 Query: 178 KNEFGIKRI---------KGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREF-ENID 227 K++ + + K G +SVEFG W+ L + + N F + + Sbjct: 367 KDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWM--LTRMENGDLKVFNTCTNFLKEMK 424 Query: 228 YQVDRDGNPKPRLEDKVNHAIDATRYAM 255 +DG ++ D+ + I ATRYA+ Sbjct: 425 MYHRKDG----KIVDRNDDMISATRYAL 448 >gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hypothetical protein ORF006 # Family: family:all:144 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293413;genbank:gi:148912834;genbank:Ge neID:5228205 Length = 531 Score = 29.3 bits (64), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 25/88 (28%) Query: 12 KFFYTYNPPKRKQSWVNKKYESQFQPSNTFV----------------HA-------STYK 48 + F T NP +WV +++ + P T V H +YK Sbjct: 196 EVFSTTNPSGPGHNWVKRRFIT-IAPRGTVVRREIQIYNPATEKEETHVISQIAIFGSYK 254 Query: 49 DNPFIAKEFIAEAEATRERSERRYRWEY 76 +NP++ +IAE E+ +E + R+ W Y Sbjct: 255 ENPYLPASYIAELESIKEPNLRK-AWLY 281 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 27.7 bits (60), Expect = 0.16, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 21/47 (44%) Query: 37 PSNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGS 83 P + + Y DNP + E E + R+ YR +LGE + + Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSA 210 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 27.7 bits (60), Expect = 0.17, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 21/47 (44%) Query: 37 PSNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGS 83 P + + Y DNP + E E + R+ YR +LGE + + Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSA 210 >gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18 # Family: family:all:54 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050979;genbank:gi:9633565;genbank:GeneID: 1262312 Length = 469 Score = 26.6 bits (57), Expect = 0.35, Method: Compositional matrix adjust. Identities = 11/46 (23%), Positives = 25/46 (54%) Query: 35 FQPSNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEA 80 ++ + +V +Y DNP++ E +A+ + + +++R Y GE Sbjct: 162 YEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGEC 207 >gi|12899|lcl|protein:vir:80432 Length: 510 # NCBI annotation: BcepGomrgp04 # Family: family:all:144 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210224;genbank:gi:146329916;genbank:Ge neID:5123541 Length = 510 Score = 25.0 bits (53), Expect = 0.95, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 20/26 (76%) Query: 46 TYKDNPFIAKEFIAEAEATRERSERR 71 +YK+N ++ E++AE E+ ++ ++R+ Sbjct: 236 SYKENIYLTPEYVAELESIKDPNKRK 261 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 24.3 bits (51), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%) Query: 232 RDGNPKPRLEDKVNHAIDATRYAMS 256 RD N KP DK NHA+D RY+++ Sbjct: 345 RDDNGKPI--DKDNHAMDEFRYSVN 367 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 24.3 bits (51), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%) Query: 232 RDGNPKPRLEDKVNHAIDATRYAMS 256 RD N KP DK NHA+D RY+++ Sbjct: 373 RDDNGKPI--DKDNHAMDEFRYSVN 395 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 21/155 (13%) Query: 111 IDYGYATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQ---------LAKWLTTKGYQS 161 +DYG + F+ W D + YY + N Q L WL Sbjct: 265 VDYG-TQNATVFLLWEKDIIGKYYLTREYYYSGRDENVQKTNAEYADDLTAWLGDTNI-- 321 Query: 162 DEMFAESAEPKSNAELKNEFGIKRIKGVKKGPDSVEFGERWLDDL---DFICIDPKRTPN 218 D + + + AELK KR +KK ++V G R++ + + I + + N Sbjct: 322 DRIIIDPSAASFIAELK-----KRGYKIKKARNNVLEGIRFVGSMLGQEKIAVH-ESCVN 375 Query: 219 IAREFENIDYQVDRDGNPKPRLEDKVNHAIDATRY 253 +EF + N + + + +HA+DA RY Sbjct: 376 TLKEFHAYVWDEKASANGEDKPIKQFDHAMDALRY 410 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 23.5 bits (49), Expect = 2.6, Method: Compositional matrix adjust. Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 242 DKVNHAIDATRYA 254 DK NHA+D +RYA Sbjct: 416 DKNNHAMDTSRYA 428 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 23.5 bits (49), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 7/41 (17%) Query: 215 RTPNIAREFENIDYQVDRDGNPKPRLEDKVNHAIDATRYAM 255 R + +EF + Y+ D G K + +HA+DA RYA+ Sbjct: 395 RCGELIQEF--LSYKEDHVGTSKAQ-----DHALDALRYAL 428 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.317 0.137 0.413 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,173 Number of Sequences: 514 Number of extensions: 7216 Number of successful extensions: 102 Number of sequences better than 100.0: 45 Number of HSP's better than 100.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 45 length of query: 273 length of database: 206,069 effective HSP length: 70 effective length of query: 203 effective length of database: 170,089 effective search space: 34528067 effective search space used: 34528067 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)