Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : psiM2 | Genbank acc : NC_001902 | Aclame index mge :87

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 32

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|Aclame:protein:vir:4159\|NCBI_annot:structural	HHsearch (proba=100.00%)
Portal	11	lcl\|Aclame:protein:vir:4156\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	10	lcl\|Aclame:protein:vir:4155\|NCBI_annot:large	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	15	lcl\|Aclame:protein:vir:4160\|NCBI_annot:unknown\|genbank:acc:NP_046969;genbank:gi:9630539;genbank:Gene	HHsearch (proba=100.00%)
Hc1	16	lcl\|Aclame:protein:vir:4161\|NCBI_annot:unknown\|genbank:acc:NP_046970;genbank:gi:9630540;genbank:Gene	HHsearch (proba=100.00%)
Ne1	17	lcl\|Aclame:protein:vir:4162\|NCBI_annot:unknown\|genbank:acc:NP_046971;genbank:gi:9630541;genbank:Gene	HHsearch (proba=100.00%)
Tc1	18	lcl\|Aclame:protein:vir:4163\|NCBI_annot:unknown\|genbank:acc:NP_046972;genbank:gi:9630542;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99424 protein:vir:105038 protein:vir:80376	BJ1 phiKO2 phi644-2	20 % 18 % 17 %
Portal	protein:vir:99452 protein:vir:3780 protein:vir:3743	BJ1 HP2 HP1	22 % 19 % 19 %
TermL	protein:vir:95253 protein:vir:97250 protein:vir:94970	Felix 01 M6 Xp15	33 % 22 % 22 %
Ad1	protein:vir:94761 protein:vir:9576 protein:vir:9761	phi LC3 SM1 315.3	17 % 16 % 16 %
Hc1	protein:vir:97237 protein:vir:80382 protein:vir:107669	M6 BcepGomr T1	20 % 18 % 24 %
Ne1	protein:vir:94654 protein:vir:99528 protein:vir:5978	mu1/6 Lj928 SPP1	22 % 27 % 22 %