Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SPBc2 | Genbank acc : NC_001884 | Aclame index mge :13

Category to which the Query Phage was assigned :

The queried phage could not be assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 185

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	52	lcl\|Aclame:protein:vir:569\|NCBI_annot:unknown\|genbank:acc:NP_046604;genbank:gi:9630177;genbank:GeneI	HHsearch (proba=96.41%)
Portal	55	lcl\|Aclame:protein:vir:572\|NCBI_annot:unknown\|genbank:acc:NP_046607;genbank:gi:9630180;genbank:GeneI	HHsearch (proba=100.00%)
TermL	56	lcl\|Aclame:protein:vir:573\|NCBI_annot:unknown\|genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneI	Blast (e-value=0)
MTP	45	lcl\|Aclame:protein:vir:562\|NCBI_annot:unknown\|genbank:acc:NP_046597;genbank:gi:9630170;genbank:GeneI	Blast (e-value=1e-156)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	48	lcl\|Aclame:protein:vir:565\|NCBI_annot:unknown\|genbank:acc:NP_046600;genbank:gi:9630173;genbank:GeneI	HHsearch (proba=88.38%)
Ne1	37	lcl\|Aclame:protein:vir:554\|NCBI_annot:unknown\|genbank:acc:NP_046589;genbank:gi:9630162;genbank:GeneI	HHsearch (proba=96.93%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97148 protein:vir:103955 protein:vir:9309	85 phiNM phi 11	10 % 10 % 10 %
Portal	protein:vir:572 protein:vir:105154 protein:vir:102080	SPBc2 C-St Fah	100 % 40 % 12 %
TermL	protein:vir:573 protein:vir:105155 protein:vir:5867	SPBc2 C-St RM 378	100 % 28 % 20 %
MTP	protein:vir:562 protein:vir:105144 protein:vir:99223	SPBc2 C-St DMS3	100 % 19 % 16 %
Hc1	protein:vir:1385 protein:vir:100244 protein:vir:1890	phi3626 Bcep176 HK022	16 % 13 % 14 %
Ne1	protein:vir:94108 protein:vir:96121 protein:vir:966	96 37 bIL285	20 % 20 % 17 %